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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0258100 |
Transcript ID | LotjaGi5g1v0258100.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60 kDa chaperonin; TAIR: AT3G23990.1 heat shock protein 60; Swiss-Prot: sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial; TrEMBL-Plants: tr|A0A0B2NVB9|A0A0B2NVB9_GLYSO Chaperonin CPN60-2, mitochondrial; Found in the gene: LotjaGi5g1v0258100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56658763..56663732) extracted from Lotus japonicus Gifu genome v1.2.
GATGGATTAAACTATATTATTTTGGTAAATTATTTTATTTTTTATATTTTTTTAAAGAGGAAGAAAAGGATTCGATTTTG ATAAGGTTGTTATTATAAAATGAAAACATAAACCTGAAAAACATAAAACCCTAAACCCTAGAAGCTGCTTCTTCTAGAGC CTTCCCTTCCCTTCCCTTCCCTTGAAAAGCAACCAGGCACAGCGCTGTTTCTCCACACCAGTGTCTGCAACTTCTTGAGT GTGACCAATCCAACAACATCATCATGTATCGCTTTGCCACTTCCCTTGCCTCCAAAGCTCGGTAAGTCACCAATGGCAAT GCTCCCTTCTGGTTTCATAAACCTTTTCAATCACCATTGTATTCACTCCGGATTGCTTTGTTTTCTAAAAAAAATTTCTG GGTCGTCGAGAAAATGACTAGAAACGGATCAAAATTGATGATTTTTCATTTACTGGTCATAGTGTCTGAGATAGATCCAG CCATGCCAATTGGTTTTATGTGCATATGTTGTGCTTGAATGTTTCATTAGCTTGAATGGTTCTAACTGTAGATCATTGAT CTTTTGGTTGCAGGATTGCTAGGAACACCAGTCAACAGGTGAAACACCATTGGTTGAATATCATTTGATTTTTTGTTGAA AATGTTTTGAGATTGGTTCTAATTTGATCTATTTATTGAATTGCATAGATTGGAAGCAGGGCGGCGTGGAGCAGGAATTA TGCGGCCAAAGACATTAAATTTGGTGTGGCGGCTCGGGCTCTGATGCTTAAGGGTGTTGAAGAGCTTGCTGATGCAGTCC AAGTAACCATGGGCCCTAAGGTAACCAAGCAAATATTTTATATTGTATTTGCTGGTGAAAGTTATTTTTGGTGATGAAAT TTTATACGTAAGAATGCTGATCTAAGATCACTATTGAATCACACACACATATATGAGGGAAGAGCAACGTTTTTGGATGT AGGAATGAGAGATATCAATTATAGTCTTATCATTTAATTCTTTATGATTTTAGGGCCGCAATGTGGTGATTGAGCAAAGT TTTGGTGCCCCTAAAGTGACAAAAGATGGAGTAACTGTTGCCAAGAGCATTGAATTCAAGGATAAAGTCAAGAATGTAGG TGCCAGTCTTGTAAAGCAGGTTGCAAATGCCACCAATGATGTGGCTGGTGATGGTGAGCTGTTTAATCCGTGGAAGATTG TACTACCATTGGTTGTGCCATTATTTTGGTGTTTTTTGTGTGACTTGTGACTGAGTAATGACGGGGCTCTCTAAATTTTG GCAGGAACCACATGTGCTACAGTTCTTACTCGAGCAATATTTGCGGAAGGGTGCAAATCAGTTGCAGCTGGTATGAATGC AATGGACCTGAGGCGAGGTATAAATATGGCGGTTGATTCGGTGGTGACAAACCTGAAGAGCAGAGCACGAATGATTAGTA CTTCTGAAGAAATAGCTCAGGTTGGTGTCTCTAATTTTTCGAGGTGTCTTTTTTTAGGAGACTGGAGATAGCAACAAGGA ATGAGAGACATGAGTTTAAACTGAACCTTATATTTCAAATTTGTGATGATAGGTTGGGACAATATCTGCTAATGGGGAGA GAGAGATTGGTGAATTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAAGGTGTAATCACAATAGCAGTAAGTTCCTGT ACTTTTATCCTGTAAACATTTTCTCTTATGTGGGTTTTATGTTTAATATGGATCTGGGTATAGGGCGATTTCATGTGATG CTTTTTTTTTATTAATATGATATACAGTAGATGGTACATTTTTCTTGATTTTTCCCTCATGATTATGAATCCCATATCAA TCACTTATTTCTGAGCCTTTCCTTTCCTCCCCGTTATCCTTACTTCCTGAGGGTTTCATGCCCTACACTTTATGATATGC TGGGACCTAACCTAACATTTGAACTGTTTCAGGATGGCAAGACATTGGAAAATGAGTTGGAAGTTGTTGAAGGCATGAAG CTTGACAGGGGCTACATTTCTCCATATTTCATAACTAACCAGAAGAACCAGAAATGTGTATGTTTTTTCTCTCTGTTTCT ACTTCACGAGTTCACGGCATTTGAAAGGTTTTTGAATCGCGTACCCCTCTATTTTCTTGATATCATGTTGATTGTGTCAT TTTTCCAACAGGAACTTGAAGATCCTCTCATTATAATCCATGAGAAGAAAATCTCGAGTATAAATGCCATAGTTAAAGTA CTAGAGTTAGCGTTGAAGGTGAGTGATGTTATTTGACTCATTTTGAATTGACTTTCTTTAGATATTGATATTGACTGCCA CTTACTCTGTTACTCATCTCCAGAAACAAAGACCTCTATTGATTGTGGCAGAGGATGTGGAAAGTGAAGCCCTGGCAACT CTTATTCTAAATAAGCTTCGTGCTGGAATCAAGGTTTGTTTTGCCAGTCTGTGGCTTTACATTTTGGTTCTTTGGTACCT CAAATATTGGGTTCCTAGTTTTGCTTGTTTGATGTGGAATTTGTTGCATTGCGTTAGGTATGTGCCATCAAAGCCCCTGG TTTTGGTGAAAATCGAAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAGTAAGTTTTCTATTTGCAATGG GGTACTACTAGTATCATATTCTATAATATCTTACAAACCTTCGAATCACACTTTTTCTCAATCCATTTAGCTTATCACTG GAGAGCTTGGCATGAATCTTGAAAAAGTGGATCTAGAGATGCTTGGCTCTTGCAAAAAGGTAACCTTTTATTCTAAGTTT CTAACTACTATATCTTTTCATGCATGATCGTGCTTTGGTACTCTCTCTTGGTTAATTTCCGTGATGGCTCAGTTTTGTTT GAGGATTCAGACTCAGAGCTTGTTTTTTGTTTACGCTTGAATTAAATTTTGAATGAACTTACAAGTTTTAGCCTGATAAT GTGTAAGATTAAATGACTTAGACTCTAATCGAGTTTCCTAATGTTTTAGATTACTATTTCCAAAGATGACACTGTCATTC TTGATGGAGCTGGTGATAAGAAAGCACTTGAGGAAAGATGTGAGCAGGTTTGTTTGAGTCTCCTATTAGATTTGGTTCCG CCATTGTTTGTATATTCTGCTTTTACCTAGTAATGGGTCTGATGGTTTCCTGATGTTTCTGGCTTGTTTCTTGTGATGAA TTTTGATAAACAGATTAGGTCTGCAATTGAAAATAGCACTTCAGATTATGACAAGGAAAAATTACAAGAAAGATTAGCCA AACTTTCTGGGGGTGTTGCAGTGCTTAAGGTATGCATATTTAAGTTGCCCTTCTTGCTTTTGGGTTTTAGCTTGATGAAT ATCCTGAGTTTCTGTCATGATAAATTAACATCTGAAACTTGACCTTTGTAGATTGGAGGAGCTAGTGAGGCTGAAGTTAG TGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACTAAGGCAGCTGTAGAGGAGGGCATATTACCTGGTAAATTAT TAGCCCTAGCTGTGTTGTTTGTATGCCTAGTTCTACATCCTCCACTTCCTTTCACATCTGATATATATTTTGCACTGCTC AGGTGGTGGTGTTGCTCTTCTGTATGCATCTAATGAGTTGAGTAAGCTTCAAACTGCCAACTTTGATCAAAAGATAGGTG TCCAGATTATCCAAAATGCTTTGAAGGTTAGACTTTTCTGTGCTTTTGCTTATGTTTAGATCATCCTTAGCATTTTTTGT TGGCAGGGCTCCACTCAACATGTTTTTCTTTCTTCTTCCTTTCTGATTGCTTTAAGGCCTCCTCTTCATGCAATATTTTC AGCTGGAGATTTGTCTTTAAGATATAGTATGGTTTACCTATAATTTCAGTTTCTTGCTCTCTTTTACTAACTGTTGTAAC AAACGATGCAGACACCTGTGCACACAATTGCAGCAAATGCTGGAGTTGAGGGCGCTGTTGTTGTCGGTAAATTATTGGAA CAAAATAATCCTGATCTTGGGTATGATGCAGCCAAAGGTCAGTGTTCTTATTTTTCCCTTTCCCTGGGCTCATTTACCTT TGCCAAAAGATAAGATTCTTACATCATTACTGATTACGGTTTCATCTTTTTTCCCACTTTGTAATTAGGTGAATATGTTG ATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATTAGAACCGCACTGGTTGACGCAGCCAGGTAGGATGTTAAG AACTTTGTGGTGGATATATGTCTTTGGTTTTTTTTTACGTAGCTTAACTAATCAAAATTTTCCTGCAGTGTGTCTTCTTT GATGACAACAACTGAAGCAATTGTGACTGAATTTCCAAAAGAAGATAAAGATGTTCCTGCTATGGGTGGTGGCATGGGTG GCATGGGTGGAATGGATTATTAGAGGCTATTTCCCCTAGTGATTTTTTCTTCCGTTGGACCTGGATTAAAGTGGTGCTTC ACCACTATTATAGCATTTTTTGCTTATTTATTGAGAGAAGGCATCCATGTAATCATAGTGAGAGTTCCAGGATGTAGGTA GGAGAAATTGTGATTATTGTTGCAATGATAAATAAGACATTTGGAACAATTTTCACCTTCAAAACCAGCAAAGAATGGTT TCACGCTGGAGTTTTCACTGACAAGACTACTCATCGAAGTTATCCTTAACTTTTCTATGAAATTAAAATGGAAATTGCTG GATGGCACGACAAAACCTCCAACAATATTTGAAGTCTGAAATGTGACCTTTGGATCTTAATTGATTTTGACCTGCTTGAG TTTTGGTTTAGTTTGAGAATAAATACTTTAAGTGCAAATCACTAGTGCCTCACGTGCCAGAAAATTTTAGTAGAAAGGTA GAGATCTTTTAATATTATTTGCTATAGAATATGGTTAAAGATAAATTCAGGAAATTTTTTCATCAATCAATCTTTTTAAG ATCTAAAAAG
CDS sequence (LotjaGi5g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCGCTTTGCCACTTCCCTTGCCTCCAAAGCTCGGATTGCTAGGAACACCAGTCAACAGATTGGAAGCAGGGCGGC GTGGAGCAGGAATTATGCGGCCAAAGACATTAAATTTGGTGTGGCGGCTCGGGCTCTGATGCTTAAGGGTGTTGAAGAGC TTGCTGATGCAGTCCAAGTAACCATGGGCCCTAAGGGCCGCAATGTGGTGATTGAGCAAAGTTTTGGTGCCCCTAAAGTG ACAAAAGATGGAGTAACTGTTGCCAAGAGCATTGAATTCAAGGATAAAGTCAAGAATGTAGGTGCCAGTCTTGTAAAGCA GGTTGCAAATGCCACCAATGATGTGGCTGGTGATGGAACCACATGTGCTACAGTTCTTACTCGAGCAATATTTGCGGAAG GGTGCAAATCAGTTGCAGCTGGTATGAATGCAATGGACCTGAGGCGAGGTATAAATATGGCGGTTGATTCGGTGGTGACA AACCTGAAGAGCAGAGCACGAATGATTAGTACTTCTGAAGAAATAGCTCAGGTTGGGACAATATCTGCTAATGGGGAGAG AGAGATTGGTGAATTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAAGGTGTAATCACAATAGCAGATGGCAAGACAT TGGAAAATGAGTTGGAAGTTGTTGAAGGCATGAAGCTTGACAGGGGCTACATTTCTCCATATTTCATAACTAACCAGAAG AACCAGAAATGTGAACTTGAAGATCCTCTCATTATAATCCATGAGAAGAAAATCTCGAGTATAAATGCCATAGTTAAAGT ACTAGAGTTAGCGTTGAAGAAACAAAGACCTCTATTGATTGTGGCAGAGGATGTGGAAAGTGAAGCCCTGGCAACTCTTA TTCTAAATAAGCTTCGTGCTGGAATCAAGGTATGTGCCATCAAAGCCCCTGGTTTTGGTGAAAATCGAAAATCTGGTCTC CAGGATCTTGCTGTTCTTACAGGAGGTCAACTTATCACTGGAGAGCTTGGCATGAATCTTGAAAAAGTGGATCTAGAGAT GCTTGGCTCTTGCAAAAAGATTACTATTTCCAAAGATGACACTGTCATTCTTGATGGAGCTGGTGATAAGAAAGCACTTG AGGAAAGATGTGAGCAGATTAGGTCTGCAATTGAAAATAGCACTTCAGATTATGACAAGGAAAAATTACAAGAAAGATTA GCCAAACTTTCTGGGGGTGTTGCAGTGCTTAAGATTGGAGGAGCTAGTGAGGCTGAAGTTAGTGAGAAGAAGGATAGAGT GACAGATGCCTTAAATGCAACTAAGGCAGCTGTAGAGGAGGGCATATTACCTGGTGGTGGTGTTGCTCTTCTGTATGCAT CTAATGAGTTGAGTAAGCTTCAAACTGCCAACTTTGATCAAAAGATAGGTGTCCAGATTATCCAAAATGCTTTGAAGACA CCTGTGCACACAATTGCAGCAAATGCTGGAGTTGAGGGCGCTGTTGTTGTCGGTAAATTATTGGAACAAAATAATCCTGA TCTTGGGTATGATGCAGCCAAAGGTGAATATGTTGATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATTAGAA CCGCACTGGTTGACGCAGCCAGTGTGTCTTCTTTGATGACAACAACTGAAGCAATTGTGACTGAATTTCCAAAAGAAGAT AAAGATGTTCCTGCTATGGGTGGTGGCATGGGTGGCATGGGTGGAATGGATTATTAG
Protein sequence (LotjaGi5g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYRFATSLASKARIARNTSQQIGSRAAWSRNYAAKDIKFGVAARALMLKGVEELADAVQVTMGPKGRNVVIEQSFGAPKV TKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGINMAVDSVVT NLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGKTLENELEVVEGMKLDRGYISPYFITNQK NQKCELEDPLIIIHEKKISSINAIVKVLELALKKQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKSGL QDLAVLTGGQLITGELGMNLEKVDLEMLGSCKKITISKDDTVILDGAGDKKALEERCEQIRSAIENSTSDYDKEKLQERL AKLSGGVAVLKIGGASEAEVSEKKDRVTDALNATKAAVEEGILPGGGVALLYASNELSKLQTANFDQKIGVQIIQNALKT PVHTIAANAGVEGAVVVGKLLEQNNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVTEFPKED KDVPAMGGGMGGMGGMDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 573 | 569 | 0.0 | – | |
PANTHER | 5 | 573 | 569 | 0.0 | – | |
Hamap | 33 | 576 | 544 | 37.8 | ||
TIGRFAM | 34 | 559 | 526 | 2.4E-228 | ||
CDD | 35 | 555 | 521 | 0.0 | ||
SUPERFAMILY | 37 | 553 | 517 | 1.07E-72 | ||
Gene3D | 38 | 553 | 516 | 8.5E-234 | ||
Pfam | 54 | 554 | 501 | 5.0E-85 | ||
PRINTS | 58 | 84 | 27 | 6.6E-71 | ||
PRINTS | 114 | 141 | 28 | 6.6E-71 | ||
Gene3D | 168 | 441 | 274 | 8.5E-234 | ||
SUPERFAMILY | 169 | 236 | 68 | 3.43E-23 | ||
SUPERFAMILY | 215 | 407 | 193 | 3.98E-80 | ||
Gene3D | 223 | 404 | 182 | 8.5E-234 | ||
PRINTS | 299 | 322 | 24 | 6.6E-71 | ||
Coils | 370 | 390 | 21 | - | – | |
PRINTS | 381 | 406 | 26 | 6.6E-71 | ||
PRINTS | 429 | 450 | 22 | 6.6E-71 | ||
ProSitePatterns | 436 | 447 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi5g1v0258100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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