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LotjaGi5g1v0260000.1

Overview

Field Value
Gene ID LotjaGi5g1v0260000
Transcript ID LotjaGi5g1v0260000.1
Lotus japonicus genome version Gifu v1.2
Description Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G48030.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P0AAW3|YBHP_ECO57 Uncharacterized protein YbhP; TrEMBL-Plants: tr|A0A0B2SP53|A0A0B2SP53_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0260000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:56853464..56858636) extracted from Lotus japonicus Gifu genome v1.2.

GTGACTAACTCATCAAAAGTTAATTATGATGATGAAAAAGAGGATCATCCAAACATGGTATAAACTATTCTATTTAACAA AGATTTCAGTTGGAAATGTAAAGCCAAATACAACCACCAACTCATTTCCTAGAAGGCTCCTTCCTCTATTCTACTCTATC TATGAAGACAAAGCAATCTTTCAAGTTTCAACTAGCCCCTAATCTAATCCTTCTTAGGAGTATATAGTATTCATTTACTC TCTCTGTTCTTTCATTTTCCTTCCAAGCCACTGCTCTACTAAACCTTCCAGGCTTCCACTTCCACTCACAAACTTCCATG CCAAACATGACAACAAAAACAAAACAGACTTGTGTTGAAAACAACTCTGCAACTTTCCCCAACCTTGTCTTATGAGATCA CCACAAGCCAAGAGTCCAAGACCCTCTTCCCTCCCACACCCACCTCCCCATTATGCTCAAGCTCCTCAACAAGAACCTCC GCCGCTTCCTCTCCCGTCTCCGGTGGCCAACTCGCCGCCGGTCAAGGTCCAAAGTGGTGGTGATCAGCAAATTAGGGAAA AATGACCACCACCACGAAACATCACCAAGCACCAATTTTTCCTCCACAGTTCACCCAAACGCTCAAATGGGTAGCCCGAA ACCCGATAAAACAATTCGGGTCGCGACGTTCAACGCTGCCCTGTTCTCCATGGCACCGGCGCTTCCAAAACCACCAACCT TCGACGACGAAAACGGCGTCGCTTTGAAAACCGGCCTCAATTCGCGATCGAAATCCACCAACGAGCGACCCAAGAGCATT CTCAAGCAATCTCAATCGCAATCTCAATCGAATTCCGAAGAAAACCTAATCAGCAAGCAACAGAAGATGACGCGATCGAA GACGAGGGTTTCAATCAATCTACCAGACAACGAGATTTCGCTGCTGCGAAACCGACAATCGAGCTTCTCTGAACACGACA AGGAGGGAGGAGGAGGAGGAGGAGCATGGTTTTTGGGTAACAATGGGGTCCACCACCACCACAACCACCACCGGAGAGGT AGCAGCAGAACGCTGGTGGAGGTGTTGAGAGAGGTGGATGCTGATGTGCTGGGTTTGCAGGACGTGAAGGCGGAGGAAGA GAACGGAATGAAGCCGCTGTCGGATTTGGCGGCGGCGCTGGGAATGAACTACGTGTTTGCTGAAAGCTGGGCGCCGGAGT ACGGCAATGCTGTCTTGTCTAAGTGGCCCATCAAACGATGGAATGCTCACAAAATCTTTGATCACACTGATTTCAGGTTT TCACTTTTTTACCACTCTTTTTTACCACTTCTAAACAGTAATTAGCATTTACTTATCTTTTGGTTGGACACTTTCTCAAA CATTCACTCTATAATCGGTTAAAATACACGTGGGTCGCACCACTTTTGAAATGGAATCCACTAATTTAGTGGGGTTACAT GAATTTTAATTAATCATAGGGTGAGTGTTTGAGAGAGAGTGTCCAAAAGAAAGTGTTGTTAGCACTTCTCTTATTTGGGT AAAATTAGGTAAATTCAATATACATCTTTCATCACCCTTATCACTTGAGATATTATTTGGGACTAAAGAAAATGTTGTTT ATGAAAAGTTATATTTGGATAATTGGGTTGATAGAAAAAGGTCACATTCATCTTGATATAATTTATTCATTCTCATTTTA TTTAAGGGTAGGATATGTATTTATATATTATATAGATATGGATAGTTAGTTAGGGGGTTTGACAAATCCAACCAATCAGA GTTTAAAGATTTATTAGATTATGATTTAAAAATTTACATAGTTTATTCAAATTAAGTAAAATATTATTGATTATGACATA TGTAAAATTAAAATGTTTTTGGTTAACACTGTAAAAGTTATTAACACGGTCAATGGTCAATGTATGTATATAAATTAAAA TCTTAATATTATTGACACTGTAAAATATCATTTACACGGTCTTTATTAATGTCTTTATTATTTTGTTTAGCATTCAAATC TTAATTGTATTTTTAGTAAATATTCTTCTACATAAAACTCATCAATCAAAATTAAAAAAAATCCTTATTTTATCTCTTTA AACTCTAAGTAACCTAATTCAATTAAGTGAATTTTCAAATGTTAAAATATTTATATATATATATTTGTTGTTTTATTTTA TTTCATTTCATTTCATTATATTACTCTTCACCATCAAATATTATTTAGAGACACACTATTATTTAAATTTACTTATTTTA CATTTAAAATCATTCAAAGTCAATATTTTATTGATGCCGATGTACAAAAAAATAATATTTTTTTGATGGGATTAATAATT CCAAAAACAATTAAAATTAAGATTTCCTTACACTCTGTAGCAAGTATTTTCTTTTCACTTTTTAAATGCCGATGGAATCA CACCAATAAAAGAGAGAAAGAGAGATCATAAGTTTATCACACCTTTTACTTCACTATTCTTGAATGGATTTCGTGGAAGC TTCTTTGTGGTTTGGCTAATTGCAAAGTGAAAAAGAGAAGATAATCACTTTTTCTACTCATAAAGTGACCAATTATTCCA AAACTTTTCAGTCACTAACTACTCTCCAAACAATGATTAAAGAATGACTTCATTTACGTGTTGTTTATCATATCATAGCT TTACTCAAAAGTGGTGTTACATGAATCCTTAAACTGCTATGCACATATCTTTTGTTGTTACTTGTTTCCTTGTTTTTTCT ATGATAGATGCCAACTGTAATAGCTGTAGGCAGCGAGGCAGGACGTCCTGTAATCCTCACCTACTCCTTAAGGATTCCCT GTTGTCATCACTCAGCTTTGTTCCCTTGAGACTGAGATGAGCTGATTTTAAGAATAGAAAAAAAATTAAAAAAAAAATAT TTATTATATTAAAAAAAATGTGTAATGTGTAATTTTTGTTCGCTACAATCTCCGTGTTCAGACTCAATGATAAGCACACG ACTTAGCTCTCGGGATTAGCATTAGGTTGTTTGTCACCAAATTTGACTTGGAGTTTGGAGAGAACAAGTACCATAACCTT CGTCAATAACTTCTAGATTTCATAATTATTTATGAGAAAAGAGAAGTTGGTCCAAACATGCTATAAGTAAACTTGATTCT CCAAATACTAATGATGCTCTATTTCATTGGATGCTAGAACAACTCTTCCGGTACAATATAAATTTCTTTGGTTTGTGTTT TTGGAAAAGGAAACTTGTACCATAAGCAGGACAAGATCATTTGTTTGGTGTCAGAGTAAATTTGTAGTATGCAATATAGA AATATTTTGTCATCATCTTGGAACATCCACTGCAAAAAAACTAATTAATAATGCTCTGCCATTCAGACACAGTTTGCTGG TCAAAAGAGTATTTTACTGTTCTGACTTAAGTTCATGATAATTAAATTGAGAAATTTGTCTTACTTTGCTCCAAAGGTAT CTCTTGCTAATGACCGTCTATTAGAAAATTATTAATGGAAACATCAGTGGAAATCCAACCTGTGTGAAAGCAGCCAAGCT AGAACAATTGAATCAATCTTGCATTGAAGTTCTGGGGTTAGAGAATGACTCAGCAACAAGGGTGAATGTGACATGCAAAT AGTGATAATTGTTTTTTTCACAGGAATGTTCTGAAGGCCACCATTGATGTTCCTCAATCAGGTGAATTCAACTTTTACTG CACTCACCTTGATCATCTCGATGAGAATTGGCGTATGAAGCAGATAAATTCAATAATACAATCTTCTGATGAGCCTCACA TCTTAGCTGGGGGCCTTAATTCACTTGATGAATCTGATTACTCTCATGAAAGATGGACTGACATTGTAAAGGTAAATCCA GCAGAACCTCAGTTTTTATTTGTCTCCTTTTGAATTTTGGCAAAAAAAAAATACATTTATAATGTAATTAGTTGACAGTG CAAAAATCATTTACACCATCAATGTACTACTGTATAGACCTTGGTAAGGGGAACTTTGCCACCCATTCAAGTCCTACTCA GCTCGAACATGATTGTCGGATACTTGTGGTTTAAACAAAAAAAATAAGACTTACATACTCTAAACCAATCAATGTTTTAA AAAAAAGATTTACATTGTTAATGTATATATATAACGCTTATAGAGAGATTGATATCTTTGTATTGGTTCAATTGTGTGCA GTACTATGAAGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAACATCTCAAGAGTAAAGACTACACAGATGCTA AAGATTATGCAGGGGAATACGAGTCAGTTGTAATGATCGCCAAGGGCCAAAGTACAAACACAATTCTGAACCTTCTATGC TATTATTGATTTTTCAAAGTTCATATTTATTATTATTGATCCCTAATTTTTTTTTTGAATATTAGTGGAATAACGCTTTT GCTGTTGTTGTATTGCAGGCGTCCAAGGGACGTGTAAGTATGGAACTCGGGTTGACTACATACTATCGTCCTCAAATTCT CCATACAAGTTTGTTCCGGGTTCGTATTTAGTCCTTTCTTCCAAAGGGACATCAGATCATCACATTGTGAAAGTTGATGT GATGAAGGTGAACAACAATCCTCAAGAAAATGTGACAAAGAAACCGCAACAACCGAGAAAGAAAATTGTCAGAATAACAC AATCAGCTCCTTCAAAGGGTATCTGGAAAATACACACTGGAGATTTAGATTGAGCTCTTCTTTCTTCCTCATTTTAGATT AGTGCTATGGTTATGATTTTGGAAATGGGGCATTTTGTTTTGTTCTTGTTTCCTAATCGTATGTTCTTTATACAGAATTC TTCAATTTGATTTACAAGAATGTAACAGAAAAGGGTAAGATGATGTGTGACACCCCCCCCCCCTAATTTGTATAGCTTTT GATTAAAAACTTGTAAAATCTACTGAGTGATTTTTTGCTTATAATTTGACAGTGTCCATGGAATTAACAATATTCATGAC TACGAGACTCTATTACTGAGCTGAAACTAAACTATTTACTTTCCTTCTAGTTCTACCATGGACAATTTCAAAAAAAAAAA AAAAAGTCCTACCATGGACATTTTGTTGGACATGTATTCTATGTCAGCCACTTCCCATACACTTCAAATCTATATTAGCG TGTTTATGAGAAGGGGTAAATTTTTTTGACAGAGAGAAGGGGTAAAGTTGTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0260000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCAAGCTCCTCAACAAGAACCTCCGCCGCTTCCTCTCCCGTCTCCGGTGGCCAACTCGCCGCCGGTCAAGGTCCAA AGTGGTGGTGATCAGCAAATTAGGGAAAAATGACCACCACCACGAAACATCACCAAGCACCAATTTTTCCTCCACAGTTC ACCCAAACGCTCAAATGGGTAGCCCGAAACCCGATAAAACAATTCGGGTCGCGACGTTCAACGCTGCCCTGTTCTCCATG GCACCGGCGCTTCCAAAACCACCAACCTTCGACGACGAAAACGGCGTCGCTTTGAAAACCGGCCTCAATTCGCGATCGAA ATCCACCAACGAGCGACCCAAGAGCATTCTCAAGCAATCTCAATCGCAATCTCAATCGAATTCCGAAGAAAACCTAATCA GCAAGCAACAGAAGATGACGCGATCGAAGACGAGGGTTTCAATCAATCTACCAGACAACGAGATTTCGCTGCTGCGAAAC CGACAATCGAGCTTCTCTGAACACGACAAGGAGGGAGGAGGAGGAGGAGGAGCATGGTTTTTGGGTAACAATGGGGTCCA CCACCACCACAACCACCACCGGAGAGGTAGCAGCAGAACGCTGGTGGAGGTGTTGAGAGAGGTGGATGCTGATGTGCTGG GTTTGCAGGACGTGAAGGCGGAGGAAGAGAACGGAATGAAGCCGCTGTCGGATTTGGCGGCGGCGCTGGGAATGAACTAC GTGTTTGCTGAAAGCTGGGCGCCGGAGTACGGCAATGCTGTCTTGTCTAAGTGGCCCATCAAACGATGGAATGCTCACAA AATCTTTGATCACACTGATTTCAGGAATGTTCTGAAGGCCACCATTGATGTTCCTCAATCAGGTGAATTCAACTTTTACT GCACTCACCTTGATCATCTCGATGAGAATTGGCGTATGAAGCAGATAAATTCAATAATACAATCTTCTGATGAGCCTCAC ATCTTAGCTGGGGGCCTTAATTCACTTGATGAATCTGATTACTCTCATGAAAGATGGACTGACATTGTAAAGTACTATGA AGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAACATCTCAAGAGTAAAGACTACACAGATGCTAAAGATTATG CAGGGGAATACGAGTCAGTTGTAATGATCGCCAAGGGCCAAAGCGTCCAAGGGACGTGTAAGTATGGAACTCGGGTTGAC TACATACTATCGTCCTCAAATTCTCCATACAAGTTTGTTCCGGGTTCGTATTTAGTCCTTTCTTCCAAAGGGACATCAGA TCATCACATTGTGAAAGTTGATGTGATGAAGGTGAACAACAATCCTCAAGAAAATGTGACAAAGAAACCGCAACAACCGA GAAAGAAAATTGTCAGAATAACACAATCAGCTCCTTCAAAGGGTATCTGGAAAATACACACTGGAGATTTAGATTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0260000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLKLLNKNLRRFLSRLRWPTRRRSRSKVVVISKLGKNDHHHETSPSTNFSSTVHPNAQMGSPKPDKTIRVATFNAALFSM APALPKPPTFDDENGVALKTGLNSRSKSTNERPKSILKQSQSQSQSNSEENLISKQQKMTRSKTRVSINLPDNEISLLRN RQSSFSEHDKEGGGGGGAWFLGNNGVHHHHNHHRRGSSRTLVEVLREVDADVLGLQDVKAEEENGMKPLSDLAAALGMNY VFAESWAPEYGNAVLSKWPIKRWNAHKIFDHTDFRNVLKATIDVPQSGEFNFYCTHLDHLDENWRMKQINSIIQSSDEPH ILAGGLNSLDESDYSHERWTDIVKYYEEMGKPTPKVEVMKHLKSKDYTDAKDYAGEYESVVMIAKGQSVQGTCKYGTRVD YILSSSNSPYKFVPGSYLVLSSKGTSDHHIVKVDVMKVNNNPQENVTKKPQQPRKKIVRITQSAPSKGIWKIHTGDLD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14859:SF3
1 474 474 3.5E-232 –
PANTHER
PTHR14859
1 474 474 3.5E-232 –
MobiDBLite
mobidb-lite
32 65 34 - –
MobiDBLite
mobidb-lite
44 58 15 - –
MobiDBLite
mobidb-lite
83 148 66 - –
MobiDBLite
mobidb-lite
99 148 50 - –
Gene3D
G3DSA:3.60.10.10
183 438 256 2.0E-33
IPR036691
SUPERFAMILY
SSF56219
196 435 240 9.68E-31
IPR036691
Pfam
PF03372
197 428 232 9.6E-9
IPR005135

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0260000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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