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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0260600 |
| Transcript ID | LotjaGi5g1v0260600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD-like repeat-protein; TAIR: AT4G03020.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O24467|LE14B_PRUAR LEC14B homolog; TrEMBL-Plants: tr|C6TA39|C6TA39_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0260600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56901683..56908170) extracted from Lotus japonicus Gifu genome v1.2.
TGAGGCGGTTGTACAAGTTTTAGTAGTTTAAAAAAAAATTATTGCATCATTAAGAACATATTACTATAAGATATCAATGA CCTCATTGAAATATTTTATGTATATTAAATATGGAAAACATAACTTAAACTCCATTGAAGATATATAAAAAATCATTTTA TTTTTATTAAAAAAAGAGTCTTGTATTTGCGGTGGCTTCATCCATCCCCTGTAACAATCTTCAACTGCACCTTGACCCAC TTCATCCAATTTTCATTAGAATGATTGATTGTATTTGTAAGTAAGCCAAGTTGCCATAGACTCACCAAAAGCAGAAAAAT CCATTGAATGTTACCCTTTTGGTCACACATATCTTACCTCAGAATCAAACCAGACAAAGGAAAAAGCAAATTCTCAAAGT AAGCCCCAGCAACTCCTCAGAGGTATAACTGTTATGTCGTGTCAACTTCTTTCAGAAATCAAGTTAAAGTTGCTTCCTTT TCTTTATTTCCTCTATGTAGCTCAACTTTGAAGTGAAAGATTTGTTTTTTACTTAGATATGGTTGATGGGTGAGGGCTAA TGGGAACTGGGTATGATTCAATTTTCAGTCCTGGTTTTTGCTTCTTTTCTTGTGAATTTTTAGTTACTGATGGTGATGTT TGTTGAACATGGAAAGGGTTTTGTGTGCAGAGAAGTGGGGTTATTTTGTTTTACTTTATTGAGTATTAACCACTGAAAAG AAGTGGCAACATGGCAGATGATCTTGACATAAGAGTATGATGTTTTTTGCTAAATTTGATGCCTAAGCACAACAAACCCA ACCCCCATTTTATCACAAAAAATCCACAGTTATGGAAATTTTCACCATATCAATAACTAATATGCTGATGATGCTTTTGG CAGGGAAAGAAGTTAACTTGATTCAACTGTGTTGCTATGGCATTATGTAATTGATTTATCTTACTATTTGATTCAAATTA CTATGTGTATGGTTGGGATTTTGTTGAACTCAATGCAGATCCACATTTGAGTCAATGTGGTAAAATCTTGCTTCTCCATT GATTGCGTTGACGCAAACGGGGAACCGAACAGGCACTATGTTTTATAATTATCTATGTGAAAAATGAAAGCTAGAAATGT ATTCATTGTTTTGTGTATACCTTTTTCTTGTAGGATTGGCAAGCAAGGGGAGTTTATGAAGATTTAGTGTGGATAAGATG CTTTGGCATTACAAAATTTTGCAATGTTGCTGTGAATAGTTATGTATGCTGTACCCAGTGAGCTTTACATTGACCAGATG GGTTATTCTATGAGTAGACTAGATGTAGAATCCAGTGGCTGTGAAGATGGAAATGCCATCCATGAAGTTTCTAGTAGTTG CCAAGCTACAAAGCCACTTAGAAATTTAGACAATGAAATTGCTCAGATAACAAAGTTGAAATCAACACCCCATCAATTAC TAATCAATGTTGGACCTGGAAGAGCAGAGTTGCCTGTTTCCCCTGTGAAGATGTTGGCAGGTCGGGAATCTAATTATTCG GGACGGGGAAGGTTTTCTTCTGCCGACCGCTGTCATCTTTTGAGCAGATATTTGCCTGTAAATGGTCCTTGGCTAATTGA TCAAATGGCTAGTCGAGCATATGTGTCTCAGTTTTCAGCTGATGGTTCTCTATTTGTTGCTGGGTTCCAGGTAAAATATT TTCAATTTCAGTCTTGTATGCTATATTTTTAACACTGATTAAACCACTTTCCAGGGAAGCCACATAAAAATTTACAATGT GGACAAAGGTTGGAAAGTTCAGAAGAACATTCTAACCAAAAGTTTAAGATGGACAATCACTGATACATCTCTTTCCCCTG ATCAACGCTATCTTGTAAGTTATTGTGTCCATTCTTTAGCATCTACTTCCTTTCATCCATTGTTTCCGTTCAATAGAGGA TACTCTCTTGTATAATATATTGCTGCCATTCTCAACCTTTTTATTATGGCATATGCATTCTTCAATTTCAGGTTTATGCC AGCATGTCACCCATTGTGCACATTGTAAATGTTGGATCTTCTGAAACGGAGTCTGTAGCAAATGTTACGGTATTCACTAC TAATGCTGTTCTTTTGGTTTTAAATTTTCTACAATTGTTTTGAATGCTATTAGATGAATAGATATTAAAAAACTGGTTTT TTCAAGATGTCTGTAACTGGTGGATGTTCAGTGCATAGATTCTTTTTATGGTATTCTTTTTATATTCATAATGTGTTTTA GTTTTTATAATGTGCAGGAGATCCATGATGGCTTGGATTTTTCGTCAAATGATGATAGAGGATACTCTTTTGGGATTTTC TCTGTGAAATTCTCAACAGATGGGAGAGAATTAGTTGCAGGAAGTAGTGGTGATTCTATCTATGTATATGATCTTGAAGC AAATAAGCTTTCACTTCGAATTTTAGCACACATGGTACTGTTACTACACACAAATACTACATTTATTTAGCTTCATATGA TGTGTTCTACTGTTTAATATCTATTAATTTATGCTGCAGAATGAATTAAATTGCATGGCTTCATATTTTGGTCTCTAGCT TTATGAGCTACAGAATTTTTTGAGCATAACATGAAGGGGGCAGTTTTGTACTCCTTGTGGTGGCATAGATTGCTGAACTG CATAATAGCAATGTGAACGCTCTATCTAGTGGCAGTGTCTTTTTATCAATGCCTCTGAAAGTCTTTGAAAACTTCTGTGT ATCATTGATGTATTTGTAAAAAGAAGTTAAAATATAATAAATTTGGAGAATGTTGGTAGAAGCACCTGCCCATAGGGAGA TTCTTGATTTTATTCCTAGCCTCTGTTTGACCTCACAATGCAAAATTTATACTTTTCTTGCATACATAAAAAAATCAAGA TCATTTGAGAGAACAACTTTGATTATCAAATACAGAATTACTTTCTGTAAGAACAGGGTTTCTGCACTATATTTTGACTG ATGGGTTCTTTGAAGGTCTAATACCTTCATCTACAAAATATTTGAAAGATGAAGAAACCCAGAAATGGTGCAGAATAAAT GCTATGAATGACCTGGCCGGAGAATCTCACCCCGAGCTAACAGAAGAAAAGGATATTGTCCTAACCAACAAATTTCAGTA AAATTGGACTTGCATAATTAATTTTTTATTTGTCGAAATTATTTTCCTATTTTGATGACTTGTGATGGATTCAAAATATT ACCTCTGAGAGCAAGAGGTTCTAACTTCTGGTTATCATTTATGTTGCAGTCTGATGTGAATACTGTATGTTTTGCCGATG AAACTAGCCATCTTATTTACTCTGGAAGTGATGATAGCTCCTGCAAGGTATGTTCTACACTATAAGATGGCTTTGTCTGT TAAGATGTTATTCACAACTTTTGATTTTGTATAGAAGTGATAACACCTTTTACACAGGTCTTCAATCTCATACACTTTTC CTAAATATTGAACCTGTGAGTTGTTATTAGTTGAGATAAGTGTCAAAGCTATTTGCTTTGATCATATTCACCTATTGCAT AGATTCCATATCTCGTAATTAGAGTTGTTTTGTCCTTCCCCCTCTGATTTGGTCAAGGTCACATTCTAATGTGAAGTTTT GTTTAGGTTTGGGATCGGCGCTGCTTAGTTTCTAAAGGCAAGCCAGCAGGGGTTTTGATGGGACACCTTGAGGGCATTAC ATTTATTGATAGCCGTGGAGATGGACGTTATTTCATTTCAAATGGTAAAGATCAAACTATCAAACTCTGGGACATACGCA AAATGTCATCCAATGCTACTTGGTATGCTCTTTTTTCCATTGCATTACACTAAATTCTGATTTCCATGTCTGTTCAACTG TTTGCTTATGATATGATATGCTTTGACAAAAGAAAATTAATACTAATATGTAAAGCGTGTCTGCTGAACTGAATGCTTAT GAAATTATATTTTGAGATTATGAGACTCGGCAATTTTATATTTCCTCCGGCAATTATGATATTTCTTGATGAAGTTATTG GCAATGCAACCTCGTACTATAACAAGATTTTCTCTTCATTCCAGCAACCCTGCACATAGAAGTCATGAATGGGACTACAG GTGGATGGATTATCCAACACAAGCAAAAGAATTGAATCACCCTTGCGATCAGTCAGTGGCTACATATAGAGGCCATTCAG TCTTACGCACTCTTGTCCGCTGCTTTTTCTCTCCAGCTTTTAGGTGATCACTAAGCCGCCCTTGCTCTGTAACTATTCTT CATTTCTTGTCATGACCCCCCTTCTGATTACTCCCCCTTAAATCTCTGCAATATTTTATCTGAGTCAATCCAGCCATATT TTCTTACCTTTGAATTGTTGGAGATTTAAGTATTTATAGTTATTCTGATGTTTTCTTCAAATTGACAGCACTGGCCAGAA GTACATCTATACTGGATCACACAATGCATGTGTTTACATATATGATTTGGTATGTATTTTAGTTACTGCTGCTCTATCAA TATCACTATGTTGCACTTGTATACCTCGGACAATTTTATCTAGGTGCAAGTTAACTAATAGTATAATTCATGACCAAATT TTATTACACCATATTCATTATTTTAGACGACAATTCACCCTTATGAGACAGTATGTTTGGTTTAACTTTTATACACTAAT TTAGGTTACTAAATCAATTCTAGCAAGGAACTACAAAGTATAGCTTTTAGGTAGAAGTGCACTGGTTTCTGTACCCACAT TTCAACCAAACACACTCATTTCTATCTTTAATGCATGTAATATACTTTGAGGGAAAATGTGGACTGTGTTGAAGCATGAG TTTCTGAGGGAATAGACTAGGATTTTCTACTTCTTTACTTTTACAATGCCTTGCTCAAAAGGAAACACTGATCACAATGT GATGAACACCTTTGTGTGTGTTTGTTTTACATTCGACTCGGCCAAAAGCACATTCACTGCGATGACACTAGAGGCATTAA TTGGCCAAAATCTCATTCAAACTACCTTGGAATGTACTCTGACAGAAATATAAACACACATTTTTCCGACTCCATATAAA ATTCCACATGCCCCCACAACTGTTAACAAAATTGCAGATCAGGTGCAGTATAACATGATGTGCATCCTCTTGATCACGAT GCATTTGCATGCTTTAATATTTGGCTATTAGATTTTATTCTCACCCTCCAAAAAAAAGCTGTTGGTTTTCTCTTGTTGAT AGTAACTTTGCTAATTCACAACAGGTGACTGGAGCTCAAGTTGCAACACTCAAGCACCACAAATCACCTGTAAGAGATTG CAGTTGGCACCCCTTCCAAACTATGCTTGTTAGCTCTTCTTGGGACGGAGATATCGTAAAATGGGAATTTGCTGGCAGTA GTGATAGAGCAGCCTCAACTAAGAAGAGGGCATGGAACAGGCATTTTTATGAAGGTTACATATGATGTCAGTCAAATCCG TTGTGAAATGATGTGGAAGATTCATATCATTTTGTTAATGAAGCTGTACATAGTGTTTGAGATAATAAGGTATAATGTGA ACTACCACAAAATCTTGTACATAAATAACCATGTAAATTGAGTATCGGATTGATTCCTTGTAGGCTGTATCTGTAATAAA TTAGTATGTTATGTTGTACCAATGCATCAATGATTTGTGCTGTTTCCTTGTGGTGAATCTTGACTTATGGCTAGTGCTTT TGCTGAAGCATTAGCATGTAAAGGGTATCCCTGATTATAGTGCAGCACATTTTACAAAGATGAGGATTAAGGAATAAAGT TAATAAGGTTTTTTAAGGTTAGGTGGTTCTCCTTCAATTACTGTATAGCATAATGTCATATTTTTGAAAACCAAAGATGC CTTTTGTTTTATATCAGCCATGTGGTTGTGGACTTGTGGTTGAGTGTCATGAGATTCTATACTTAGTCTCATAATTTGTC TCACCTAATTTGCTTGTATATATCAGCCATGTACTATATGATATTTCTTATCATGATGCCTTGATTCCTTGAATTTGATA GACTAAATCATGATTATTATTAAATAGCAGGCTGATTTTATACCTTATGTTTTAAAAAGCAAAAGGTGTTTTCGACAACT TTTATAAAAATTCTCAGACAGTTTCTCCAAAAGGGTTACCCTTTCAAAGGACAAAGTGAAAACTTGGGTCCCTTACTGTC TTCCGTCAGAGGTAATAAACGCAAATATTGTGTTTCCAATCCAAGGGCTACAAGCAAATTCCAAGTACTATATGAGAAAC GGTAGGATTCAATCGAGAAAATTAGGCACACTCAGACTCAGTACAATGGAGGAAGACAATAGAGCATGAAGAGTTAATGC CTCCAATAGATGGCAGTAGTATCTGGTTAAAACCTTAAAGGCAGATACCAAAAGATTAATAGGTATAGACATGCATTCTG CCAAAACATATACTAATGTGATGTGATATAGAATGTCCAGTTCGACAAAACAACAACAAGAAGAACAACATTACAGGGAT GAAAATTG
CDS sequence (LotjaGi5g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCTGTACCCAGTGAGCTTTACATTGACCAGATGGGTTATTCTATGAGTAGACTAGATGTAGAATCCAGTGGCTG TGAAGATGGAAATGCCATCCATGAAGTTTCTAGTAGTTGCCAAGCTACAAAGCCACTTAGAAATTTAGACAATGAAATTG CTCAGATAACAAAGTTGAAATCAACACCCCATCAATTACTAATCAATGTTGGACCTGGAAGAGCAGAGTTGCCTGTTTCC CCTGTGAAGATGTTGGCAGGTCGGGAATCTAATTATTCGGGACGGGGAAGGTTTTCTTCTGCCGACCGCTGTCATCTTTT GAGCAGATATTTGCCTGTAAATGGTCCTTGGCTAATTGATCAAATGGCTAGTCGAGCATATGTGTCTCAGTTTTCAGCTG ATGGTTCTCTATTTGTTGCTGGGTTCCAGGGAAGCCACATAAAAATTTACAATGTGGACAAAGGTTGGAAAGTTCAGAAG AACATTCTAACCAAAAGTTTAAGATGGACAATCACTGATACATCTCTTTCCCCTGATCAACGCTATCTTGTTTATGCCAG CATGTCACCCATTGTGCACATTGTAAATGTTGGATCTTCTGAAACGGAGTCTGTAGCAAATGTTACGGAGATCCATGATG GCTTGGATTTTTCGTCAAATGATGATAGAGGATACTCTTTTGGGATTTTCTCTGTGAAATTCTCAACAGATGGGAGAGAA TTAGTTGCAGGAAGTAGTGGTGATTCTATCTATGTATATGATCTTGAAGCAAATAAGCTTTCACTTCGAATTTTAGCACA CATGTCTGATGTGAATACTGTATGTTTTGCCGATGAAACTAGCCATCTTATTTACTCTGGAAGTGATGATAGCTCCTGCA AGGTTTGGGATCGGCGCTGCTTAGTTTCTAAAGGCAAGCCAGCAGGGGTTTTGATGGGACACCTTGAGGGCATTACATTT ATTGATAGCCGTGGAGATGGACGTTATTTCATTTCAAATGGTAAAGATCAAACTATCAAACTCTGGGACATACGCAAAAT GTCATCCAATGCTACTTGCAACCCTGCACATAGAAGTCATGAATGGGACTACAGGTGGATGGATTATCCAACACAAGCAA AAGAATTGAATCACCCTTGCGATCAGTCAGTGGCTACATATAGAGGCCATTCAGTCTTACGCACTCTTGTCCGCTGCTTT TTCTCTCCAGCTTTTAGCACTGGCCAGAAGTACATCTATACTGGATCACACAATGCATGTGTTTACATATATGATTTGGT GACTGGAGCTCAAGTTGCAACACTCAAGCACCACAAATCACCTGTAAGAGATTGCAGTTGGCACCCCTTCCAAACTATGC TTGTTAGCTCTTCTTGGGACGGAGATATCGTAAAATGGGAATTTGCTGGCAGTAGTGATAGAGCAGCCTCAACTAAGAAG AGGGCATGGAACAGGCATTTTTATGAAGGTTACATATGA
Protein sequence (LotjaGi5g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYAVPSELYIDQMGYSMSRLDVESSGCEDGNAIHEVSSSCQATKPLRNLDNEIAQITKLKSTPHQLLINVGPGRAELPVS PVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMASRAYVSQFSADGSLFVAGFQGSHIKIYNVDKGWKVQK NILTKSLRWTITDTSLSPDQRYLVYASMSPIVHIVNVGSSETESVANVTEIHDGLDFSSNDDRGYSFGIFSVKFSTDGRE LVAGSSGDSIYVYDLEANKLSLRILAHMSDVNTVCFADETSHLIYSGSDDSSCKVWDRRCLVSKGKPAGVLMGHLEGITF IDSRGDGRYFISNGKDQTIKLWDIRKMSSNATCNPAHRSHEWDYRWMDYPTQAKELNHPCDQSVATYRGHSVLRTLVRCF FSPAFSTGQKYIYTGSHNACVYIYDLVTGAQVATLKHHKSPVRDCSWHPFQTMLVSSSWDGDIVKWEFAGSSDRAASTKK RAWNRHFYEGYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 488 | 488 | 5.2E-293 | – | |
| PANTHER | 1 | 488 | 488 | 5.2E-293 | – | |
| PIRSF | 2 | 491 | 490 | 1.2E-208 | ||
| SMART | 115 | 151 | 37 | 170.0 | ||
| Gene3D | 116 | 219 | 104 | 8.0E-7 | ||
| SUPERFAMILY | 126 | 467 | 342 | 5.19E-53 | ||
| SMART | 160 | 196 | 37 | 250.0 | ||
| SMART | 202 | 254 | 53 | 0.98 | ||
| Gene3D | 220 | 377 | 158 | 1.8E-26 | ||
| ProSiteProfiles | 222 | 263 | 42 | 8.838 | ||
| ProSiteProfiles | 222 | 476 | 255 | 24.6 | ||
| SMART | 258 | 297 | 40 | 6.3E-5 | ||
| Pfam | 263 | 297 | 35 | 1.6E-4 | ||
| ProSiteProfiles | 264 | 297 | 34 | 10.843 | ||
| PRINTS | 284 | 298 | 15 | 8.2E-5 | ||
| SMART | 304 | 343 | 40 | 3.6E-5 | ||
| Pfam | 306 | 343 | 38 | 0.0022 | ||
| ProSiteProfiles | 311 | 352 | 42 | 13.148 | ||
| PRINTS | 330 | 344 | 15 | 8.2E-5 | ||
| Gene3D | 378 | 482 | 105 | 2.2E-17 | ||
| SMART | 380 | 425 | 46 | 7.0 | ||
| SMART | 428 | 467 | 40 | 1.8E-7 | ||
| Pfam | 431 | 466 | 36 | 1.5E-4 | ||
| ProSiteProfiles | 435 | 476 | 42 | 10.308 | ||
| PRINTS | 454 | 468 | 15 | 8.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0260600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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