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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0260600 |
| Transcript ID | LotjaGi5g1v0260600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT4G03020.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O24467|LE14B_PRUAR LEC14B homolog; TrEMBL-Plants: tr|A0A0R0HW30|A0A0R0HW30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0260600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56902746..56906929) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATGCTGTACCCAGTGAGCTTTACATTGACCAGATGGGTTATTCTATGAGTAGACTAGATGTAGAATCCAGTGGCTG TGAAGATGGAAATGCCATCCATGAAGTTTCTAGTAGTTGCCAAGCTACAAAGCCACTTAGAAATTTAGACAATGAAATTG CTCAGATAACAAAGTTGAAATCAACACCCCATCAATTACTAATCAATGTTGGACCTGGAAGAGCAGAGTTGCCTGTTTCC CCTGTGAAGATGTTGGCAGGTCGGGAATCTAATTATTCGGGACGGGGAAGGTTTTCTTCTGCCGACCGCTGTCATCTTTT GAGCAGATATTTGCCTGTAAATGGTCCTTGGCTAATTGATCAAATGGCTAGTCGAGCATATGTGTCTCAGTTTTCAGCTG ATGGTTCTCTATTTGTTGCTGGGTTCCAGGTAAAATATTTTCAATTTCAGTCTTGTATGCTATATTTTTAACACTGATTA AACCACTTTCCAGGGAAGCCACATAAAAATTTACAATGTGGACAAAGGTTGGAAAGTTCAGAAGAACATTCTAACCAAAA GTTTAAGATGGACAATCACTGATACATCTCTTTCCCCTGATCAACGCTATCTTGTAAGTTATTGTGTCCATTCTTTAGCA TCTACTTCCTTTCATCCATTGTTTCCGTTCAATAGAGGATACTCTCTTGTATAATATATTGCTGCCATTCTCAACCTTTT TATTATGGCATATGCATTCTTCAATTTCAGGTTTATGCCAGCATGTCACCCATTGTGCACATTGTAAATGTTGGATCTTC TGAAACGGAGTCTGTAGCAAATGTTACGGTATTCACTACTAATGCTGTTCTTTTGGTTTTAAATTTTCTACAATTGTTTT GAATGCTATTAGATGAATAGATATTAAAAAACTGGTTTTTTCAAGATGTCTGTAACTGGTGGATGTTCAGTGCATAGATT CTTTTTATGGTATTCTTTTTATATTCATAATGTGTTTTAGTTTTTATAATGTGCAGGAGATCCATGATGGCTTGGATTTT TCGTCAAATGATGATAGAGGATACTCTTTTGGGATTTTCTCTGTGAAATTCTCAACAGATGGGAGAGAATTAGTTGCAGG AAGTAGTGGTGATTCTATCTATGTATATGATCTTGAAGCAAATAAGCTTTCACTTCGAATTTTAGCACACATGGTACTGT TACTACACACAAATACTACATTTATTTAGCTTCATATGATGTGTTCTACTGTTTAATATCTATTAATTTATGCTGCAGAA TGAATTAAATTGCATGGCTTCATATTTTGGTCTCTAGCTTTATGAGCTACAGAATTTTTTGAGCATAACATGAAGGGGGC AGTTTTGTACTCCTTGTGGTGGCATAGATTGCTGAACTGCATAATAGCAATGTGAACGCTCTATCTAGTGGCAGTGTCTT TTTATCAATGCCTCTGAAAGTCTTTGAAAACTTCTGTGTATCATTGATGTATTTGTAAAAAGAAGTTAAAATATAATAAA TTTGGAGAATGTTGGTAGAAGCACCTGCCCATAGGGAGATTCTTGATTTTATTCCTAGCCTCTGTTTGACCTCACAATGC AAAATTTATACTTTTCTTGCATACATAAAAAAATCAAGATCATTTGAGAGAACAACTTTGATTATCAAATACAGAATTAC TTTCTGTAAGAACAGGGTTTCTGCACTATATTTTGACTGATGGGTTCTTTGAAGGTCTAATACCTTCATCTACAAAATAT TTGAAAGATGAAGAAACCCAGAAATGGTGCAGAATAAATGCTATGAATGACCTGGCCGGAGAATCTCACCCCGAGCTAAC AGAAGAAAAGGATATTGTCCTAACCAACAAATTTCAGTAAAATTGGACTTGCATAATTAATTTTTTATTTGTCGAAATTA TTTTCCTATTTTGATGACTTGTGATGGATTCAAAATATTACCTCTGAGAGCAAGAGGTTCTAACTTCTGGTTATCATTTA TGTTGCAGTCTGATGTGAATACTGTATGTTTTGCCGATGAAACTAGCCATCTTATTTACTCTGGAAGTGATGATAGCTCC TGCAAGGTATGTTCTACACTATAAGATGGCTTTGTCTGTTAAGATGTTATTCACAACTTTTGATTTTGTATAGAAGTGAT AACACCTTTTACACAGGTCTTCAATCTCATACACTTTTCCTAAATATTGAACCTGTGAGTTGTTATTAGTTGAGATAAGT GTCAAAGCTATTTGCTTTGATCATATTCACCTATTGCATAGATTCCATATCTCGTAATTAGAGTTGTTTTGTCCTTCCCC CTCTGATTTGGTCAAGGTCACATTCTAATGTGAAGTTTTGTTTAGGTTTGGGATCGGCGCTGCTTAGTTTCTAAAGGCAA GCCAGCAGGGGTTTTGATGGGACACCTTGAGGGCATTACATTTATTGATAGCCGTGGAGATGGACGTTATTTCATTTCAA ATGGTAAAGATCAAACTATCAAACTCTGGGACATACGCAAAATGTCATCCAATGCTACTTGGTATGCTCTTTTTTCCATT GCATTACACTAAATTCTGATTTCCATGTCTGTTCAACTGTTTGCTTATGATATGATATGCTTTGACAAAAGAAAATTAAT ACTAATATGTAAAGCGTGTCTGCTGAACTGAATGCTTATGAAATTATATTTTGAGATTATGAGACTCGGCAATTTTATAT TTCCTCCGGCAATTATGATATTTCTTGATGAAGTTATTGGCAATGCAACCTCGTACTATAACAAGATTTTCTCTTCATTC CAGCAACCCTGCACATAGAAGTCATGAATGGGACTACAGGTGGATGGATTATCCAACACAAGCAAAAGAATTGAATCACC CTTGCGATCAGTCAGTGGCTACATATAGAGGCCATTCAGTCTTACGCACTCTTGTCCGCTGCTTTTTCTCTCCAGCTTTT AGGTGATCACTAAGCCGCCCTTGCTCTGTAACTATTCTTCATTTCTTGTCATGACCCCCCTTCTGATTACTCCCCCTTAA ATCTCTGCAATATTTTATCTGAGTCAATCCAGCCATATTTTCTTACCTTTGAATTGTTGGAGATTTAAGTATTTATAGTT ATTCTGATGTTTTCTTCAAATTGACAGCACTGGCCAGAAGTACATCTATACTGGATCACACAATGCATGTGTTTACATAT ATGATTTGGTATGTATTTTAGTTACTGCTGCTCTATCAATATCACTATGTTGCACTTGTATACCTCGGACAATTTTATCT AGGTGCAAGTTAACTAATAGTATAATTCATGACCAAATTTTATTACACCATATTCATTATTTTAGACGACAATTCACCCT TATGAGACAGTATGTTTGGTTTAACTTTTATACACTAATTTAGGTTACTAAATCAATTCTAGCAAGGAACTACAAAGTAT AGCTTTTAGGTAGAAGTGCACTGGTTTCTGTACCCACATTTCAACCAAACACACTCATTTCTATCTTTAATGCATGTAAT ATACTTTGAGGGAAAATGTGGACTGTGTTGAAGCATGAGTTTCTGAGGGAATAGACTAGGATTTTCTACTTCTTTACTTT TACAATGCCTTGCTCAAAAGGAAACACTGATCACAATGTGATGAACACCTTTGTGTGTGTTTGTTTTACATTCGACTCGG CCAAAAGCACATTCACTGCGATGACACTAGAGGCATTAATTGGCCAAAATCTCATTCAAACTACCTTGGAATGTACTCTG ACAGAAATATAAACACACATTTTTCCGACTCCATATAAAATTCCACATGCCCCCACAACTGTTAACAAAATTGCAGATCA GGTGCAGTATAACATGATGTGCATCCTCTTGATCACGATGCATTTGCATGCTTTAATATTTGGCTATTAGATTTTATTCT CACCCTCCAAAAAAAAGCTGTTGGTTTTCTCTTGTTGATAGTAACTTTGCTAATTCACAACAGGTGACTGGAGCTCAAGT TGCAACACTCAAGCACCACAAATCACCTGTAAGAGATTGCAGTTGGCACCCCTTCCAAACTATGCTTGTTAGCTCTTCTT GGGACGGAGATATCGTAAAATGGGAATTTGCTGGCAGTAGTGATAGAGCAGCCTCAACTAAGAAGAGGGCATGGAACAGG CATTTTTATGAAGGTTACATATGA
CDS sequence (LotjaGi5g1v0260600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCTGTACCCAGTGAGCTTTACATTGACCAGATGGGTTATTCTATGAGTAGACTAGATGTAGAATCCAGTGGCTG TGAAGATGGAAATGCCATCCATGAAGTTTCTAGTAGTTGCCAAGCTACAAAGCCACTTAGAAATTTAGACAATGAAATTG CTCAGATAACAAAGTTGAAATCAACACCCCATCAATTACTAATCAATGTTGGACCTGGAAGAGCAGAGTTGCCTGTTTCC CCTGTGAAGATGTTGGCAGGTCGGGAATCTAATTATTCGGGACGGGGAAGGTTTTCTTCTGCCGACCGCTGTCATCTTTT GAGCAGATATTTGCCTGTAAATGGTCCTTGGCTAATTGATCAAATGGCTAGTCGAGCATATGTGTCTCAGTTTTCAGCTG ATGGTTCTCTATTTGTTGCTGGGTTCCAGGGAAGCCACATAAAAATTTACAATGTGGACAAAGGTTGGAAAGTTCAGAAG AACATTCTAACCAAAAGTTTAAGATGGACAATCACTGATACATCTCTTTCCCCTGATCAACGCTATCTTGTTTATGCCAG CATGTCACCCATTGTGCACATTGTAAATGTTGGATCTTCTGAAACGGAGTCTGTAGCAAATGTTACGGAGATCCATGATG GCTTGGATTTTTCGTCAAATGATGATAGAGGATACTCTTTTGGGATTTTCTCTGTGAAATTCTCAACAGATGGGAGAGAA TTAGTTGCAGGAAGTAGTGGTGATTCTATCTATGTATATGATCTTGAAGCAAATAAGCTTTCACTTCGAATTTTAGCACA CATGGTTTGGGATCGGCGCTGCTTAGTTTCTAAAGGCAAGCCAGCAGGGGTTTTGATGGGACACCTTGAGGGCATTACAT TTATTGATAGCCGTGGAGATGGACGTTATTTCATTTCAAATGGTAAAGATCAAACTATCAAACTCTGGGACATACGCAAA ATGTCATCCAATGCTACTTGCAACCCTGCACATAGAAGTCATGAATGGGACTACAGGTGGATGGATTATCCAACACAAGC AAAAGAATTGAATCACCCTTGCGATCAGTCAGTGGCTACATATAGAGGCCATTCAGTCTTACGCACTCTTGTCCGCTGCT TTTTCTCTCCAGCTTTTAGCACTGGCCAGAAGTACATCTATACTGGATCACACAATGCATGTGTTTACATATATGATTTG GTGACTGGAGCTCAAGTTGCAACACTCAAGCACCACAAATCACCTGTAAGAGATTGCAGTTGGCACCCCTTCCAAACTAT GCTTGTTAGCTCTTCTTGGGACGGAGATATCGTAAAATGGGAATTTGCTGGCAGTAGTGATAGAGCAGCCTCAACTAAGA AGAGGGCATGGAACAGGCATTTTTATGAAGGTTACATATGA
Protein sequence (LotjaGi5g1v0260600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYAVPSELYIDQMGYSMSRLDVESSGCEDGNAIHEVSSSCQATKPLRNLDNEIAQITKLKSTPHQLLINVGPGRAELPVS PVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMASRAYVSQFSADGSLFVAGFQGSHIKIYNVDKGWKVQK NILTKSLRWTITDTSLSPDQRYLVYASMSPIVHIVNVGSSETESVANVTEIHDGLDFSSNDDRGYSFGIFSVKFSTDGRE LVAGSSGDSIYVYDLEANKLSLRILAHMVWDRRCLVSKGKPAGVLMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRK MSSNATCNPAHRSHEWDYRWMDYPTQAKELNHPCDQSVATYRGHSVLRTLVRCFFSPAFSTGQKYIYTGSHNACVYIYDL VTGAQVATLKHHKSPVRDCSWHPFQTMLVSSSWDGDIVKWEFAGSSDRAASTKKRAWNRHFYEGYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 1.1E-266 | – | |
| PANTHER | 1 | 268 | 268 | 1.1E-266 | – | |
| SMART | 115 | 151 | 37 | 170.0 | ||
| Gene3D | 116 | 267 | 152 | 6.3E-14 | ||
| SUPERFAMILY | 126 | 441 | 316 | 6.41E-42 | ||
| SMART | 160 | 196 | 37 | 250.0 | ||
| SMART | 202 | 254 | 53 | 0.98 | ||
| ProSiteProfiles | 222 | 450 | 229 | 14.608 | ||
| ProSiteProfiles | 222 | 263 | 42 | 8.838 | ||
| Gene3D | 268 | 457 | 190 | 1.1E-27 | ||
| PANTHER | 269 | 462 | 194 | 1.1E-266 | – | |
| PANTHER | 269 | 462 | 194 | 1.1E-266 | – | |
| SMART | 278 | 317 | 40 | 3.6E-5 | ||
| Pfam | 280 | 317 | 38 | 0.002 | ||
| ProSiteProfiles | 285 | 326 | 42 | 13.148 | ||
| SMART | 354 | 399 | 46 | 7.0 | ||
| SMART | 402 | 441 | 40 | 1.8E-7 | ||
| Pfam | 405 | 440 | 36 | 1.4E-4 | ||
| ProSiteProfiles | 409 | 450 | 42 | 10.308 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0260600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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