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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0261200 |
| Transcript ID | LotjaGi5g1v0261200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|K7K8H7|K7K8H7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0261200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56991055..56992481) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTTGTCATCTATTGTTGCAGTGTAAGTGTATTTGGCGTCTCTGCAGAATCTATGCAGTGTTCTTATGATTCAAAAGG GAACAGTGTCCCTACAATTCTCTTACTAATGCAGGAACGTTTATACTCCCAGGGAGGCTTAAAGGTAGAACTCAATGTAT ACTGCATTTTATTATTTTTTAACATTAAGGTTTTGCAAGCAGCCAGTTTCAGAGAAATTCATTTTTTCTTTTCAATGGTG TTTTTTCAGGCTGAAGGAATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGAACCAGTTGAATAGAGG CATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTAATTAAAGCCTGGTTCCGAGAGCTTCCTCAAGGAGTGC TGGATGGACTTTCCCCTGAACAAGTTCTGCAGTGTAACACCGAAGAAGAATCTATCGAGCTTGTGAAGCAGCTGAAGCCA ACCGAGACTGCCTTACTCAACTGGGCTATTGATCTCATGGCCGATGTTGTAGAAGATGAGGAATGTAACAAAATGAACGC AAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGGTATGCGACATACCCTTTTACATAAAATTCGCTTAATGTT CATGTCTTTATAGGTTATCTTAGACTATCCATTTCCTCTGTTTTGGGATTTTGTTAAAATCTGAATTATCTAATCATGGT TATCTTCACATAAGACATCTATAGTTTACATTACCAAAGAAGTTGCAACATTGCGCTTTTCATTTCTTGCCCTCATTAGA CATATACACACTGGGAAGTCATCTATTGTATTTTGATTTTTGAATTCTTGTTTATGTGTTTGTCTCCTGGAACAGATGTC TGATCCTCTAACCGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACATTGATAATGAAGACACTTAGAGAAC GTGAAGAAACAGCAACAGGTGGATATTCACCCATGTCCTTTCATTCATCAGATCGCCGGTCTGAGGCTGAATATGACAGT CAGCGAGAAATGGACACAAGCGGTGAGCTGAGAGGGGCCAAATCAGATTGTGGTTCCCACTACAGCCATAGCAGTGAAGA GGAAGTGGAGGCTGAATCTCTGAGTGAGATCGAAGAACGCTTCTTGAAGCAGTTGGATGAGAACACAAAAGGATTCTCAG AAGAACCTGCAGCTTCTTTGCAAGAGTATGTTAACCCCAGTAACTCTGGCTATAGCGTGGAACCTGCTGCATCAAATACT GATAGCAAAACAGGGAAACCTTGCTTGAGGACCGGTTTGGATTCAAGTATTGACTCAAGTAGGGCATGGACAGGCACCAA AGAAGTGGAGATGATGGATAAATTTACAGATTCGGTTCCACCAGTGCCGCTGGTTGCATCTAGTTAA
CDS sequence (LotjaGi5g1v0261200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTGTTCTTATGATTCAAAAGGGAACAGTGTCCCTACAATTCTCTTACTAATGCAGGAACGTTTATACTCCCAGGG AGGCTTAAAGGCTGAAGGAATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGAACCAGTTGAATAGAG GCATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTAATTAAAGCCTGGTTCCGAGAGCTTCCTCAAGGAGTG CTGGATGGACTTTCCCCTGAACAAGTTCTGCAGTGTAACACCGAAGAAGAATCTATCGAGCTTGTGAAGCAGCTGAAGCC AACCGAGACTGCCTTACTCAACTGGGCTATTGATCTCATGGCCGATGTTGTAGAAGATGAGGAATGTAACAAAATGAACG CAAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACCGCCCTGATGCATGCGGTTCAA GTGATGAACTTACTCAAGACATTGATAATGAAGACACTTAGAGAACGTGAAGAAACAGCAACAGGTGGATATTCACCCAT GTCCTTTCATTCATCAGATCGCCGGTCTGAGGCTGAATATGACAGTCAGCGAGAAATGGACACAAGCGGTGAGCTGAGAG GGGCCAAATCAGATTGTGGTTCCCACTACAGCCATAGCAGTGAAGAGGAAGTGGAGGCTGAATCTCTGAGTGAGATCGAA GAACGCTTCTTGAAGCAGTTGGATGAGAACACAAAAGGATTCTCAGAAGAACCTGCAGCTTCTTTGCAAGAGTATGTTAA CCCCAGTAACTCTGGCTATAGCGTGGAACCTGCTGCATCAAATACTGATAGCAAAACAGGGAAACCTTGCTTGAGGACCG GTTTGGATTCAAGTATTGACTCAAGTAGGGCATGGACAGGCACCAAAGAAGTGGAGATGATGGATAAATTTACAGATTCG GTTCCACCAGTGCCGCTGGTTGCATCTAGTTAA
Protein sequence (LotjaGi5g1v0261200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRNQLNRGIVPDDIDVHCLAGLIKAWFRELPQGV LDGLSPEQVLQCNTEEESIELVKQLKPTETALLNWAIDLMADVVEDEECNKMNARNIAMVFAPNMTQMSDPLTALMHAVQ VMNLLKTLIMKTLREREETATGGYSPMSFHSSDRRSEAEYDSQREMDTSGELRGAKSDCGSHYSHSSEEEVEAESLSEIE ERFLKQLDENTKGFSEEPAASLQEYVNPSNSGYSVEPAASNTDSKTGKPCLRTGLDSSIDSSRAWTGTKEVEMMDKFTDS VPPVPLVASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 325 | 325 | 3.6E-161 | – | |
| ProSiteProfiles | 1 | 177 | 177 | 24.137 | ||
| PANTHER | 1 | 325 | 325 | 3.6E-161 | – | |
| SUPERFAMILY | 2 | 170 | 169 | 1.9E-35 | ||
| Gene3D | 2 | 182 | 181 | 5.2E-33 | ||
| SMART | 10 | 173 | 164 | 2.3E-29 | ||
| CDD | 13 | 169 | 157 | 2.1874E-32 | – | |
| Pfam | 13 | 148 | 136 | 1.3E-20 | ||
| MobiDBLite | 177 | 237 | 61 | - | – | |
| MobiDBLite | 192 | 212 | 21 | - | – | |
| MobiDBLite | 222 | 237 | 16 | - | – | |
| MobiDBLite | 266 | 288 | 23 | - | – | |
| MobiDBLite | 266 | 295 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi5g1v0261200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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