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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0262500 |
| Transcript ID | LotjaGi5g1v0262500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60 kDa chaperonin; TAIR: AT3G23990.1 heat shock protein 60; Swiss-Prot: sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial; TrEMBL-Plants: tr|Q1RSH3|Q1RSH3_MEDTR GroEL-like chaperone, ATPase; Found in the gene: LotjaGi5g1v0262500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57148966..57153960) extracted from Lotus japonicus Gifu genome v1.2.
GGTTGTTATATTTTTCCAACAAAGGTTGAGAGCAAAAGCTTGGGCCCATGAGAACCTGAAACTAGTTAAGGGGTGAAATG GCAATAAAATGAAAACATAAACCTGCTGAAAAACATAAAACCCTAAACCCTAGAAGCTGTTCTTCTAGAGCCTTCCCTTC TCTTCCCTTGAAAAGCAACCAGGCACAGCGCTTCTGTTCCCTCCACACCAGTGTCTGCAACTTCTTCATTGACTGTTACC AATCCAACATCATCATCATCATGTATCGCTTTGCCACTTCCCTTGCCTCCAAAGCTCGGTAAGTCACCAATGGCAATGTT CCCTTCTGGTTTCAGAAACCTTTTCAATTACCATTGTATACACTCCGGATTGCTTTGTTTTCTAAAATTGTTCTTCTGGG TCGTCGAGAAAATCATTGGAAACGGATCAAAATTGTTGATTTTTCATTTACTGATCATAGTGTCTGAGATAGATCCAGCC ATGTTGATTGGTTTTATGTGCATAAGTTGTGCTTGAATGGCTCTAACTGTAAACCATTGTTCTTTTGGTTGCAGGATTGC TAGGAACACCAGTCAACAGGTGAAACACCATTGGTTGAATATCATTTGATTTTTTGTTGACAATGTTTTGAGATTGATAA TTCCTTTTACTTTTACCCTTAATCCTTAGTCTAATTTGTTCTATTTATTTATTTATTGAATTGCATAGATTGGAAGTAGG GCGGCGTGGAGCAGGAATTATGCGGCCAAAGACATTAAATTTGGTGTGGAGGCTCGGGCTCTGATGCTGAAGGGTGTTGA AGAGCTTGCTGATGCAGTCAAAGTAACCATGGGCCCTAAGGTAACCAAGCAGATATTTTATCTTGTCTTTGCTGGTGTAA GGTATCAATTATAGTCCTATCATTTAATTCTTCTGATTTTAGGGCCGCAATGTGGTGATTGAGCAAAGTTATGGTGCCCC TAAAGTGACAAAAGATGGAGTAACTGTTGCCAAGAGCATTGAATTCAAGGATAGAGTCAAGAATGTAGGTGCCAGTCTTG TAAAGCAGGTTGCAAATGCCACCAATGATGTGGCTGGTGATGGTAAGCTGTTTAATCCATGGAAGATTGTACTGTGTAGA TAAACCTTCAAAATTGGTTGTGCCATTATTTTGGTGGTGTTTTATTTTTTTGTGACTGAGTAATGACGGAGCAGCCTAAA TTATGGCAGGAACCACATGTGCTACTGTCCTTACTCGAGCAATATTTGCGGAAGGTTGCAAATCAGTTGCAGCTGGTATG AATGCAATGGACCTGAGGCGAGGTATTAATATGGCTGTTGATTCTGTGGTCACAAACCTGAAGAGCAGAGCACGAATGAT TAGCACTTCTGAAGAAATAGCTCAGGTTGGTTTCTCAAATTTTTAGAGCTGTCTTATCTTAAGAGACTAGAGACAGCAAC AAGGAATGAGATACGTGAGTTCAAACTGAACCTTATATTTCAAATTTGCAATGATAGGTTGGGACAATATCTGCTAATGG GGAGAGAGAGATTGGTGAATTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAAGGTGTAATCACGATTGCAGTAAGTT CTTGTACTTTTATCCTGTAAACATTTTCTCTTATTAGGGTTTTATGTTTCTTATGGGTCTTGGTACAGGGCGATTTCACG TGATGTTTTTTCTTTGTTAATATGATATACAGTAGATGCTACATTTTTCTTGAATTTTCCCTCATGATTATAAACCCATA TCAACCACTTATTTCTGAGCCTTTCCTTTCCTCCCCTTTATCCTTACTTCCTGAGGGGTTCATCGATTGAATATTGACGC CCTACACTTAATGATATGCTGGGACCTAACCTAACATTTGAACTGTTTCAGGATGGCAAGACATTGGAAAATGAGTTGGA AGTTGTTGAAGGCATGAAGCTTGACAGGGGCTACATTTCTCCATATTTCATAACTAACCAGAAGAACCAGAAATGTGTAT GTTTTTTTCTCTCTGTCTCTACTTCACAGCAGTACGAATGTTTTTGAATCATGTACCCCTCTATTTTCTTGATATATCAT GCTGATTGTGTCATTCTTCCAACAGGAACTTGAAGATCCTCTCATTATAATCCATGAGAAGAAAATCTCGAGTATAAATG CCATAGTTAAAGTACTAGAGTTAGCATTGAAGGTGAGTGATGCCATTTGATTCACTTTGAATTGACTTTCTTTAGATATT GATATTGACTGCCACTCTGTTACTCATCTCCAGAAACAAAGACCTTTATTGATTGTGGCAGAGGATGTGGAAAGTGATGC CCTTGCAACTCTTATTCTAAATAAGCTTCGTGCTGGAATCAAGGTTTGTTTTGCCAGTCTGTGGCTTTACATTTTGGTTC TTTGGTACCTCAAATATTGGGTTCCTAGTTTTGCTTATTTGATGTGGAATTTGTTGCATTGCCTTAGGTATGTGCCATCA AAGCCCCTGGTTTTGGTGAAAATCGAAAATCTGGTCTCCAGGATCTTGCCGTTCTTACCGGAGCTCAGGTAAGTTTTGTA TTTGCAATGGGTTTATTACTAGTACCATATTCTATAATATCTTACAAACCTTCGAATGACACATTTTCTCTATCCATTTA GCTTATCACTGAAGAGCTTGGCATGAATCTTGAAAAAGTGGATCTGGAGATGCTTGGCTCTTGCAAAAAGGTAACCTTTT AACTTAACTGCTATAACATTTTCATGCATGATTGTATTTTGGTTCTCTCTCTTGGTTTTCATGATAGCTCAGTTTTGGTA AAGGATTCAGACTCGAGCTGTTTTTTTGTTTATGCTTGACTTAAATTTTGAATGAACTTACAAGAAGTGTTATCAAATAG CGGTTATAGCGGCGCTATGCCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCCGCTATTGCCCGCTATAGCGCGC TATTCCCGCTATTTCCGCTATTTGCCGCCAAATAGCGGCCGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCACGATC GCGATTTGATAACACTGCTTACAAGTTTTAGCCTGATAATGTGTAAGGTTAAATGACTTAGACTTTAATTGAGTTTCCTA ATGTTTTAGGTCACTATTTCCAAAGACGACACTGTCATTCTTAATGGAGCTGGTGATAAGAAATCACTTGAGGAAAGATC TGAGCAGGTTTGTTTGAGTCTCCTTTTAGATTTGGTTCCACCATTGTTTGTATATTCTGCTTTTACATAGTGATAGGTCT GATGGTTTGCTGATGTTTCTGGCTTGTTTCTTGTGATGGATTTTGATAAACAGATTAGGTCTGCAATTGAAAATAGCACT TCAGATTATGACAAGGAAAAGTTACAAGAAAGATTAGCCAAGCTTTCTGGGGGTGTTGCAGTGCTTAAGGTATGCATATT TAAGTTGCCTTTCATGCTTTTGGGTTTTTGCTTGTTGAATATCCTGAGTTTCTGTCATGATAAATTTAACATCTGAAACT TGACTTTTGTAGATCGGAGGAGCCAGTGAGGCTGAAGTTAGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAAC TAAGGCAGCTGTAGAGGAGGGCATATTACCTGGTAAATTATTAGCCCTAGCTGTGTTGTTTGTATGCTTAGTTCTACATC CTCCACTTCCTGTCACATCTGATATATATTTTGCACTGCACAGGTGGTGGTGTTGCTCTTCTGTATGCATCTAATGAGTT GAGTAAGCTTCAAACTGCCAACTTTGATCAAAAGATAGGTGTCCAGATTATCCAAAATGCTTTGAAGGTTAGATTTTTCT GTGCTTTTGCTTATTTTTTGTTTAGATCATCCTTAGCATTTTTTGTTGGCAGGGCTCCACTCAACATATTGTTCTTTCTT CTTCCTTTCTGATTGCTTTAAGGCCTCTTCCTGCAATATTTTCAGCTGGAGATTTGTATAGTACGACTTACCTATAATTT CAGTTACTTGCTCCCTTTTACTAACTGTTGTAACAAACGATGCAGACACCTGTGCACACAATTGCCGCAAATGCTGGAGT TGAGGGGGCTGTTGTCGTCGGTAAATTATTGGAACAAAATAATCCTGATCTTGGGTATGATGCCGCCAAAGGTCAGTGTT CTTCTTTTTCCCTTTCCCTGGGCTCATTTACCTTTGTCAAAAGATAAGATTCTTACATTGTTACTGATTATGTTTTCATC TTTTTTCCCACTTTGTAATTAGGTGAATATGTTGATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATTAGGAC CGCACTTGTTGATGCAGCCAGGTAGGATGTTAAGAACTTTGTGGTGGATAGTGATGTCTTTGGTTTTTTGGTTTTTTTTA CGTAGTTTTACTTATCAATTTTTTTCCTGCAGTGTGTCTTCTTTGATGACAACAACTGAAGCAATTGTGACCGAATTTCC AAAGGAAGATAAAGATGCTCCTGCTATGGGTGGTGGCATGGGTGGCATGGATTATTAGAGGCTATTTTCCCTAGTGATTT TTTCTTCCAATGAGAATTAGGTGCTCAAACTTGCAATTCATTGGGGACACGCTCGGATTTAAAAATTAACCCAATCAATA TTTAAGGTTGAGTGAAAGTCAAGTATAATTCCTGCTTCTCAAGTGCCATCCTTGCTTAGAATGCTAGCTACCTACTTACA TCCCATACACATAAAATTTGAAAGTTTGCACACTTTTTTGCCCCTTAATGTGTCCCTTTCTATCTATTTGGTTGATTGTC ATTACCTATTTGGCAACAAGTTTAGCATATAAAGCAATTAATGTGGGGATTTTACATGAAAGAAAAGAAAAAAAAGATGG GGCAGAGATTGTTTAGTATGTCAATTTCGAGACAGAGACTTAACATATTAATTTAACGATCAAAATTTGAAGTTAAAACG AAAGTGAAGTCAACAATTGAATTAATCTTTGACGG
CDS sequence (LotjaGi5g1v0262500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCGCTTTGCCACTTCCCTTGCCTCCAAAGCTCGGATTGCTAGGAACACCAGTCAACAGATTGGAAGTAGGGCGGC GTGGAGCAGGAATTATGCGGCCAAAGACATTAAATTTGGTGTGGAGGCTCGGGCTCTGATGCTGAAGGGTGTTGAAGAGC TTGCTGATGCAGTCAAAGTAACCATGGGCCCTAAGGGCCGCAATGTGGTGATTGAGCAAAGTTATGGTGCCCCTAAAGTG ACAAAAGATGGAGTAACTGTTGCCAAGAGCATTGAATTCAAGGATAGAGTCAAGAATGTAGGTGCCAGTCTTGTAAAGCA GGTTGCAAATGCCACCAATGATGTGGCTGGTGATGGAACCACATGTGCTACTGTCCTTACTCGAGCAATATTTGCGGAAG GTTGCAAATCAGTTGCAGCTGGTATGAATGCAATGGACCTGAGGCGAGGTATTAATATGGCTGTTGATTCTGTGGTCACA AACCTGAAGAGCAGAGCACGAATGATTAGCACTTCTGAAGAAATAGCTCAGGTTGGGACAATATCTGCTAATGGGGAGAG AGAGATTGGTGAATTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAAGGTGTAATCACGATTGCAGATGGCAAGACAT TGGAAAATGAGTTGGAAGTTGTTGAAGGCATGAAGCTTGACAGGGGCTACATTTCTCCATATTTCATAACTAACCAGAAG AACCAGAAATGTGAACTTGAAGATCCTCTCATTATAATCCATGAGAAGAAAATCTCGAGTATAAATGCCATAGTTAAAGT ACTAGAGTTAGCATTGAAGAAACAAAGACCTTTATTGATTGTGGCAGAGGATGTGGAAAGTGATGCCCTTGCAACTCTTA TTCTAAATAAGCTTCGTGCTGGAATCAAGGTATGTGCCATCAAAGCCCCTGGTTTTGGTGAAAATCGAAAATCTGGTCTC CAGGATCTTGCCGTTCTTACCGGAGCTCAGCTTATCACTGAAGAGCTTGGCATGAATCTTGAAAAAGTGGATCTGGAGAT GCTTGGCTCTTGCAAAAAGGTCACTATTTCCAAAGACGACACTGTCATTCTTAATGGAGCTGGTGATAAGAAATCACTTG AGGAAAGATCTGAGCAGATTAGGTCTGCAATTGAAAATAGCACTTCAGATTATGACAAGGAAAAGTTACAAGAAAGATTA GCCAAGCTTTCTGGGGGTGTTGCAGTGCTTAAGATCGGAGGAGCCAGTGAGGCTGAAGTTAGTGAGAAGAAGGATAGAGT GACAGATGCCTTAAATGCAACTAAGGCAGCTGTAGAGGAGGGCATATTACCTGGTGGTGGTGTTGCTCTTCTGTATGCAT CTAATGAGTTGAGTAAGCTTCAAACTGCCAACTTTGATCAAAAGATAGGTGTCCAGATTATCCAAAATGCTTTGAAGACA CCTGTGCACACAATTGCCGCAAATGCTGGAGTTGAGGGGGCTGTTGTCGTCGGTAAATTATTGGAACAAAATAATCCTGA TCTTGGGTATGATGCCGCCAAAGGTGAATATGTTGATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATTAGGA CCGCACTTGTTGATGCAGCCAGTGTGTCTTCTTTGATGACAACAACTGAAGCAATTGTGACCGAATTTCCAAAGGAAGAT AAAGATGCTCCTGCTATGGGTGGTGGCATGGGTGGCATGGATTATTAG
Protein sequence (LotjaGi5g1v0262500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYRFATSLASKARIARNTSQQIGSRAAWSRNYAAKDIKFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSYGAPKV TKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGINMAVDSVVT NLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGKTLENELEVVEGMKLDRGYISPYFITNQK NQKCELEDPLIIIHEKKISSINAIVKVLELALKKQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSGL QDLAVLTGAQLITEELGMNLEKVDLEMLGSCKKVTISKDDTVILNGAGDKKSLEERSEQIRSAIENSTSDYDKEKLQERL AKLSGGVAVLKIGGASEAEVSEKKDRVTDALNATKAAVEEGILPGGGVALLYASNELSKLQTANFDQKIGVQIIQNALKT PVHTIAANAGVEGAVVVGKLLEQNNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVTEFPKED KDAPAMGGGMGGMDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 574 | 570 | 0.0 | – | |
| PANTHER | 5 | 574 | 570 | 0.0 | – | |
| Hamap | 33 | 573 | 541 | 37.752 | ||
| TIGRFAM | 34 | 559 | 526 | 3.6E-228 | ||
| CDD | 35 | 555 | 521 | 0.0 | ||
| SUPERFAMILY | 37 | 553 | 517 | 1.07E-73 | ||
| Gene3D | 38 | 553 | 516 | 4.2E-234 | ||
| Pfam | 54 | 554 | 501 | 2.9E-86 | ||
| PRINTS | 58 | 84 | 27 | 6.6E-71 | ||
| PRINTS | 114 | 141 | 28 | 6.6E-71 | ||
| Gene3D | 168 | 441 | 274 | 4.2E-234 | ||
| SUPERFAMILY | 169 | 236 | 68 | 3.43E-23 | ||
| SUPERFAMILY | 215 | 407 | 193 | 1.63E-79 | ||
| Gene3D | 223 | 404 | 182 | 4.2E-234 | ||
| PRINTS | 299 | 322 | 24 | 6.6E-71 | ||
| Coils | 370 | 390 | 21 | - | – | |
| PRINTS | 381 | 406 | 26 | 6.6E-71 | ||
| PRINTS | 429 | 450 | 22 | 6.6E-71 | ||
| ProSitePatterns | 436 | 447 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi5g1v0262500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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