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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0266300 |
| Transcript ID | LotjaGi5g1v0266300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT3G22430.1 RNA recognition motif XS domain protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|K7LKH7|K7LKH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0266300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57828365..57833506) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTATCTTATCTAATAATCTTATAAAGATAAAAAAAAAAAATGCTGTAGCATTTATCGAGGTAAGACTTGATCAAATT CAGCAGTTGACTACATTGCATAAACGAGAAGAAGCTCATGAATCCACAAAAAAATCCAACCTTTGAGTTCTAGTTGCAGA AATATTCATCGCGATGATTCATCTTCCCTCTGCATCGATTCATCTCCAAAAGGTTTGAATTTGATGAAAAAACAACATTA AATCTCATCTCATTCATCAATCGCTTTCTTCAATTTTAGCTTGATCTCTCTCAATTTGCAATCCCTCTTTCTAGGGTTAG GGTTTGAGAATCGGTAGGGTTTTCTCGCTTTTCCAGGATCTCTCTTCGAATTCCCAAAATTCGACCAAAAGGGTATCTAG GGTTTAGTCAATTAACCATGCAATACAGGCGGCGCGATGAAGAGCACGCTGCACTGTCTCCGTCTCCCAAGTTGCGTGCT AAGCACCGACTCGGACCGGTCGGAGGAGCGAGTCACGACCCGCTTCGGAGGAGGCTGGATCGATCTGCGGTGCAGCAGAG GAACGTGAGCCCGATGGATAGGGTGAGGAGGGGTGGTGGTGGTAATGGGTTTGAAGGAAGGGATGGTGATTGGCATTTGG GTGCTCGAAGGAGCGGTAGGGTCCGATCCCGGTCGCCTCCTGCTGAACAAGTGAGGCAAAGGTCACATTATGATGATGGG GTTGGCCATAGAAGTTCATCTCCACTACCGCCACCGGTACCACCGCCGCCTATGGAGATGAGAACAAGATATGAGTTACC AAAAAACATGGATTACGGTGTCGATGATGATGAAAACTTGGATGCGAAATGTGTTTACCTCAACAGAGAGGACTTGATTG AAAGCAGAAATGGACAAGGTATTGTGGATCCAAAGTTTGTGCCGCGTGAAAATGAAAGAGGAGGAGGTTCATATAGGTTA ATTCCAGATATGGGTGTAAGTGTAGCACCACAATATGAAGAAGCTAGTGGGCCCTTGCCTCCGCAGCCATCAAGGGGTGT GGCAGTGGGGAGATTTGAGCATGAAAGACTACATCACCGAGAATCTCTACCTATGGATAAGATACCTGTCACTGAATCCC ACAGTGGGGCAGATAAAAGTGTATTTCATGGAAGGAATGTTCCGTATTCTGGCGTTTCTCCCTCTTATACAAAGGATTTT GCAGGCACTTCACACTCTAGGGGTTATGGGAGCTCCTCCGCAGAAATGTCGAGGAGTGATTTTCTGTGCATGAGAGATGA TGGCGTCTGTTTACCTGCATCTTATGACATCTCAAGGAGCCGTGGAAAACTCGCAGAAGGGGTAGATTTTAGTTCACATG GTCAAAGGCCACTTATAGACACTACAAGAGGTCCTGAAATTGGGCAAAGGAATATGATATGTCACCAACATTGTGAGTTT AGTCCTCCCAGGAGTGAGCATTTGGATTACTTTAATTCCAAATTACCGGTAGGAGCAGCGCAGGATGATCATATATATCA GTATGGTGATTTACCTAGAAGGATAGCTCCTCATAGTCGATTGGACTATGAGCAAGCTGTAATGGAATATGATGAAAGAG AGTTGTCCAGACCTTACATCTCACATCCTGATTTAAATAGATCTGGTAGGAGTGAAGGTTCTTATGGCGATCCAAGAAGG GTTATTATACATGACCGCCCTTCATTTCAGGAACCGAAATATTTTGACCATCATGATATGAGAAGAACATCAATTCCTTC GATGCAAGATGAGGCCTATTTACGTTCAGGATATAATTATCATGAAAGTGGGAAAATAATACCGCAAGATTATGAAGATT CATATCTTGGTCCACCAGAGGCTGATCGCCAATCAATGTTAAGAACAGAATATGAATATCAAAGAGATAGAGGTCTAGGG GTTCAGCAAGAAAGGTTTGAAAGTTCACCTTTGTCTATACATGAATCAGAAACTACTTACAGACAATCTACCAGAATGCA GGAAATGGAACAGGATCATGGTATTCATGACCATTCAAATAGACCTATGAAAAGAAAATACAACACCCATGATAAAAAGG ATGTGCATGCTTTGAGAGCAATGAGATCAAGTAAATGGGACGCAACTGAAGAATTTCAAGATTTATATGAAAGTGGAGAG TGGATAGATGATGAAGATATGAATGTGTTGTATTCATCTGATAATGTTGGGTTCAACCATAAGGTGTACAGGAAAGATAA GAATGAATTCAATGAGTTTGGGAATGAAGGAAATTTTCCTTCTGATGAGTGGACATTACCTCCAGATCGTACAGGACATG GACACAGACATCCATTTCAATATCAGAAGTATTCTGGTCAAAATGTAAAGCATCATTCAAAGTTTGGTTCTTCAAACTGG TATAAGTTTCAGCATTTTTCTAAAAGAAATGCAATTCAGAAACAGCATAAAGGTTGGAAAAAGTATCATGGTCATGATGA GATTAAGCATACAACTAATGATGAGTCATATGAAGAGGACTGGGAAAATGCTGCAGAACCTGAGCCAACTGAGGGCTCTG AGGAGTTTGAACAAATGGTACATGAAAATTTCTTATTGTACTCCAAGAAGTTGAATCTGAACCTATCTGTCCAAAAAAGG TACAAAGACCAAGGAAAAGCTGGTACTTTGTTCTGCGTCGTATGTGGTAAAAGGTTTGTTTTCTTTTCTATGATGCCATT TTATTGAATGGAGCACTTCTGTACACACATTGAGTCAGGTTTTCCTTAGTATTCAACTTACAGGTGGTCTCAAGTGTGCG TATTGTTCTTGGGATCACATCTTAGTTTCTAACAACTTTGGAATTCTAACATGTTGGTATGTGTAATTGTTGTACTTTTT AATAAGGGGGATGTGTGGGTTTTTTAATAGCACCAATCCCATGCCAATAGGGTCAAACATATGGTAAACTTGGCAACTTG CTTTGTGATGAACATGAGTTGCAGATCTTGTAGAAGTGGTGTCTGTAGGAGGCTTCAGGTGTTAGCAGAGATATATTACC TCTGTGATGTTTGAGATTAATCTGAAATTGGAATTGTATAGAGTGAGCCGTGAGGTATTGTATTAGTTTTCTTGTATGCC TTAATCTAATTAAGTTAGACAAAATCAATTACAGTTGGTTTTTTCATCATTTTTCTTTTCGGTTTGAGGGGAATTTATAG TTGACAATGCTAAGTACCTAATCTGAGGTACTTCTAGGAAGTTGATGACATGCAAGGGGTTTTGTTCGTTATTGCTTTGA TGAACAGATTAGAAAGTGAACTAGAGGGCTAATTACATAGGTTGTATTTATTGATGCTATATAAAATGATTATTTTGAGA CTTTCCAATAACTGTTGAGGTTTGTAATATTCTAAATATGATCTTAATTTTTTTCACTTAATCGACGTCACCTATTTAAC TTCATGGTTACCGCTGAATTTTATTGTGTAATGCTTCCTCTCTTCTTTTCTCCCTTGGCTTCAAACATGAACTTCCTCAA ATACATTGTAATAAAAATAGTTGAGCTTATCTTTTTAGTTTTCTTCTGTACTTCTTTTTTATTCTCAAGAGCCATACATA AGTCACCAGTAAGTTTTATTTTTTAACATGAAGTGTTATTAATTTTTTTTTTATGACTCATAACATGTTTATTTGTCCCG TTTATCTTTCTTTATTATACAGCTCCTCAAAGGAATTCATGGACACTCAGCGCTTAGTTACTCATGCTTTTATGTCCCAT AAGACTGGGCTGAGAGCAAAACATTTGGCTCTTCATAAAGCAATATGTGTTATGATGGGATGGGATACTGTTGTTCCTCA AGATACAGTAACCTGGGTTCCCCAGGTCCTGCCCCATGCCGAAGCTCTGGCTCAAAAGGAGGATTTGATTCTTTGGCCTC CTATAGCTATCATCCATAACATATCGATGTATGATGACAATCCACAAAACTGGAAGGTTGTAAGCATGGAAACTATTGAA GCATTTCTAAGAGGTGAGTTTGTGTTGAGTTTCAAGATTCAAACTTAATATAATTTTTAATGAACCAAATTTACTTTTTT GTTAGTTTGATTATACACGTAATATCCATTTGAATATGCACGTTTAGCACAATAGATGTTAAATTTCTACCACGTGTTGG AATCTTCACTCATTATTTGTTGCCTAGTGAAAACTGCACATTTGGCAATGTTATTTACTTCTAAACTTGCAGGCAAAGGT TTTGTGACTGGAAGAGTCAAATTATGCTTAGGGAAGCCTGCAGACCAAAGTGTTATTTTGGTGAAGTTCTTGGGCACATT TGGTGGGCTGGGAGATGCAGAGAGGCTTCATAAATACCTTTCTGAAAATAACCGGGGGAGAGCTGAATATGAGAAGGTAA AATCTGGAAGTATCAAAAGCTCTAACATAGGAGAGACAGATCAGGGAGAGCAAGTGGAGAGTATTCTGTATGGTTATGTG GGAGTTGCAGATGACTTGGACAAACTAGATTTCAATAGTAAGAGTTGGAGTTTGGTAAAGAGCAGGAAGGAGATTGACGA CCTGGAAAAGGCTCCTGTTAAAACCGATAAGAGCCGTTAGTTTCAAAATGGTGAAAGACCCTTTTAGAAATTTCATGCTC CTCTGATGCAAGAGTTAAGTATGGTCATTACATAACTTGTCTGTCCCTGTGACTATGTTATCAGATCATGTATATGGGAC AGGAACTAGAACTCAATCTTTAGTCCTACTGTAAGAAATCTTTTCAGTTTCTGAATGTTTTTAACTGAATCTGACTTAAT GCTGATTCAGAATCCTGTGTTATTGTATCGAGCACTATGGCCCTGTGTTAAATGTTCCTAATGAATATTCCCTTCTATCA TTAAGGTTCAATCATAGTTCTCTTATTCCAACAACTCACAGTATGTTTGGTACAACATCCATAATCCACGATGAGTTAGG AAACATGCATAGCTTATTGATCATCTGTCTAATTTGGATCCTCGCCACCTAAATCTGTCTCTATCTGATATTCAAGTTGT TGATTTATATGTAACAATTTGAAGTTTTCATGGTCTATGCTCCCTCCTGTAGTCTGGTCTATTGCAAATTTTAGTCATTG GTACATCTCGTATTCATCTTAG
CDS sequence (LotjaGi5g1v0266300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATACAGGCGGCGCGATGAAGAGCACGCTGCACTGTCTCCGTCTCCCAAGTTGCGTGCTAAGCACCGACTCGGACC GGTCGGAGGAGCGAGTCACGACCCGCTTCGGAGGAGGCTGGATCGATCTGCGGTGCAGCAGAGGAACGTGAGCCCGATGG ATAGGGTGAGGAGGGGTGGTGGTGGTAATGGGTTTGAAGGAAGGGATGGTGATTGGCATTTGGGTGCTCGAAGGAGCGGT AGGGTCCGATCCCGGTCGCCTCCTGCTGAACAAGTGAGGCAAAGGTCACATTATGATGATGGGGTTGGCCATAGAAGTTC ATCTCCACTACCGCCACCGGTACCACCGCCGCCTATGGAGATGAGAACAAGATATGAGTTACCAAAAAACATGGATTACG GTGTCGATGATGATGAAAACTTGGATGCGAAATGTGTTTACCTCAACAGAGAGGACTTGATTGAAAGCAGAAATGGACAA GGTATTGTGGATCCAAAGTTTGTGCCGCGTGAAAATGAAAGAGGAGGAGGTTCATATAGGTTAATTCCAGATATGGGTGT AAGTGTAGCACCACAATATGAAGAAGCTAGTGGGCCCTTGCCTCCGCAGCCATCAAGGGGTGTGGCAGTGGGGAGATTTG AGCATGAAAGACTACATCACCGAGAATCTCTACCTATGGATAAGATACCTGTCACTGAATCCCACAGTGGGGCAGATAAA AGTGTATTTCATGGAAGGAATGTTCCGTATTCTGGCGTTTCTCCCTCTTATACAAAGGATTTTGCAGGCACTTCACACTC TAGGGGTTATGGGAGCTCCTCCGCAGAAATGTCGAGGAGTGATTTTCTGTGCATGAGAGATGATGGCGTCTGTTTACCTG CATCTTATGACATCTCAAGGAGCCGTGGAAAACTCGCAGAAGGGGTAGATTTTAGTTCACATGGTCAAAGGCCACTTATA GACACTACAAGAGGTCCTGAAATTGGGCAAAGGAATATGATATGTCACCAACATTGTGAGTTTAGTCCTCCCAGGAGTGA GCATTTGGATTACTTTAATTCCAAATTACCGGTAGGAGCAGCGCAGGATGATCATATATATCAGTATGGTGATTTACCTA GAAGGATAGCTCCTCATAGTCGATTGGACTATGAGCAAGCTGTAATGGAATATGATGAAAGAGAGTTGTCCAGACCTTAC ATCTCACATCCTGATTTAAATAGATCTGGTAGGAGTGAAGGTTCTTATGGCGATCCAAGAAGGGTTATTATACATGACCG CCCTTCATTTCAGGAACCGAAATATTTTGACCATCATGATATGAGAAGAACATCAATTCCTTCGATGCAAGATGAGGCCT ATTTACGTTCAGGATATAATTATCATGAAAGTGGGAAAATAATACCGCAAGATTATGAAGATTCATATCTTGGTCCACCA GAGGCTGATCGCCAATCAATGTTAAGAACAGAATATGAATATCAAAGAGATAGAGGTCTAGGGGTTCAGCAAGAAAGGTT TGAAAGTTCACCTTTGTCTATACATGAATCAGAAACTACTTACAGACAATCTACCAGAATGCAGGAAATGGAACAGGATC ATGGTATTCATGACCATTCAAATAGACCTATGAAAAGAAAATACAACACCCATGATAAAAAGGATGTGCATGCTTTGAGA GCAATGAGATCAAGTAAATGGGACGCAACTGAAGAATTTCAAGATTTATATGAAAGTGGAGAGTGGATAGATGATGAAGA TATGAATGTGTTGTATTCATCTGATAATGTTGGGTTCAACCATAAGGTGTACAGGAAAGATAAGAATGAATTCAATGAGT TTGGGAATGAAGGAAATTTTCCTTCTGATGAGTGGACATTACCTCCAGATCGTACAGGACATGGACACAGACATCCATTT CAATATCAGAAGTATTCTGGTCAAAATGTAAAGCATCATTCAAAGTTTGGTTCTTCAAACTGGTATAAGTTTCAGCATTT TTCTAAAAGAAATGCAATTCAGAAACAGCATAAAGGTTGGAAAAAGTATCATGGTCATGATGAGATTAAGCATACAACTA ATGATGAGTCATATGAAGAGGACTGGGAAAATGCTGCAGAACCTGAGCCAACTGAGGGCTCTGAGGAGTTTGAACAAATG GTACATGAAAATTTCTTATTGTACTCCAAGAAGTTGAATCTGAACCTATCTGTCCAAAAAAGGTACAAAGACCAAGGAAA AGCTGGTACTTTGTTCTGCGTCGTATGTGGTAAAAGCTCCTCAAAGGAATTCATGGACACTCAGCGCTTAGTTACTCATG CTTTTATGTCCCATAAGACTGGGCTGAGAGCAAAACATTTGGCTCTTCATAAAGCAATATGTGTTATGATGGGATGGGAT ACTGTTGTTCCTCAAGATACAGTAACCTGGGTTCCCCAGGTCCTGCCCCATGCCGAAGCTCTGGCTCAAAAGGAGGATTT GATTCTTTGGCCTCCTATAGCTATCATCCATAACATATCGATGTATGATGACAATCCACAAAACTGGAAGGTTGTAAGCA TGGAAACTATTGAAGCATTTCTAAGAGGCAAAGGTTTTGTGACTGGAAGAGTCAAATTATGCTTAGGGAAGCCTGCAGAC CAAAGTGTTATTTTGGTGAAGTTCTTGGGCACATTTGGTGGGCTGGGAGATGCAGAGAGGCTTCATAAATACCTTTCTGA AAATAACCGGGGGAGAGCTGAATATGAGAAGGTAAAATCTGGAAGTATCAAAAGCTCTAACATAGGAGAGACAGATCAGG GAGAGCAAGTGGAGAGTATTCTGTATGGTTATGTGGGAGTTGCAGATGACTTGGACAAACTAGATTTCAATAGTAAGAGT TGGAGTTTGGTAAAGAGCAGGAAGGAGATTGACGACCTGGAAAAGGCTCCTGTTAAAACCGATAAGAGCCGTTAG
Protein sequence (LotjaGi5g1v0266300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQYRRRDEEHAALSPSPKLRAKHRLGPVGGASHDPLRRRLDRSAVQQRNVSPMDRVRRGGGGNGFEGRDGDWHLGARRSG RVRSRSPPAEQVRQRSHYDDGVGHRSSSPLPPPVPPPPMEMRTRYELPKNMDYGVDDDENLDAKCVYLNREDLIESRNGQ GIVDPKFVPRENERGGGSYRLIPDMGVSVAPQYEEASGPLPPQPSRGVAVGRFEHERLHHRESLPMDKIPVTESHSGADK SVFHGRNVPYSGVSPSYTKDFAGTSHSRGYGSSSAEMSRSDFLCMRDDGVCLPASYDISRSRGKLAEGVDFSSHGQRPLI DTTRGPEIGQRNMICHQHCEFSPPRSEHLDYFNSKLPVGAAQDDHIYQYGDLPRRIAPHSRLDYEQAVMEYDERELSRPY ISHPDLNRSGRSEGSYGDPRRVIIHDRPSFQEPKYFDHHDMRRTSIPSMQDEAYLRSGYNYHESGKIIPQDYEDSYLGPP EADRQSMLRTEYEYQRDRGLGVQQERFESSPLSIHESETTYRQSTRMQEMEQDHGIHDHSNRPMKRKYNTHDKKDVHALR AMRSSKWDATEEFQDLYESGEWIDDEDMNVLYSSDNVGFNHKVYRKDKNEFNEFGNEGNFPSDEWTLPPDRTGHGHRHPF QYQKYSGQNVKHHSKFGSSNWYKFQHFSKRNAIQKQHKGWKKYHGHDEIKHTTNDESYEEDWENAAEPEPTEGSEEFEQM VHENFLLYSKKLNLNLSVQKRYKDQGKAGTLFCVVCGKSSSKEFMDTQRLVTHAFMSHKTGLRAKHLALHKAICVMMGWD TVVPQDTVTWVPQVLPHAEALAQKEDLILWPPIAIIHNISMYDDNPQNWKVVSMETIEAFLRGKGFVTGRVKLCLGKPAD QSVILVKFLGTFGGLGDAERLHKYLSENNRGRAEYEKVKSGSIKSSNIGETDQGEQVESILYGYVGVADDLDKLDFNSKS WSLVKSRKEIDDLEKAPVKTDKSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 982 | 982 | 0.0 | – | |
| PANTHER | 1 | 982 | 982 | 0.0 | – | |
| MobiDBLite | 1 | 120 | 120 | - | – | |
| MobiDBLite | 88 | 102 | 15 | - | – | |
| MobiDBLite | 400 | 420 | 21 | - | – | |
| MobiDBLite | 679 | 704 | 26 | - | – | |
| MobiDBLite | 681 | 698 | 18 | - | – | |
| Gene3D | 821 | 983 | 163 | 1.0E-10 | ||
| Pfam | 825 | 952 | 128 | 3.7E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Gene silencing by RNA | Any process in which RNA molecules inactivate expression of target genes. |
Expression pattern of LotjaGi5g1v0266300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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