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PF03468

Source: Pfam

Description

XS domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0031047
Biological process Gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.
Subterm of

Associated Lotus transcripts 30

Transcript Name Description Predicted domains Domain count
Lj0g3v0013419.1
– Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1|
Domains
10
Lj0g3v0020739.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
Domains
9
Lj0g3v0079859.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
Domains
9
Lj0g3v0157459.1
– Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1|
Domains
10
Lj0g3v0240679.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
Domains
9
Lj0g3v0241289.1
– PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1|
Domains
9
Lj0g3v0241289.2
– PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1|
Domains
11
Lj1g3v1386430.1
– Reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1|
Domains
9
Lj1g3v1386440.1
– Reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1|
Domains
9
Lj3g3v2168470.1
– XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1|
Domains
11
Lj5g3v2046030.1
– Uncharacterized protein TCM_020625 [Theobroma cacao] gi|508713788|gb|EOY05685.1|
Domains
6
Lj6g3v1177220.1
– XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1|
Domains
12
Lj6g3v1880230.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
Domains
8
Lj6g3v2257830.1
– PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] gi|356528785|ref|XP_003532978.1|
Domains
9
LotjaGi1g1v0089300.1
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300
Domains
12
LotjaGi1g1v0089300.2
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300
Domains
12
LotjaGi1g1v0330500.1
– Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT5G23570.1 XS domain-containing protein / XS zinc finger domain-containing protein-like protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|D3GBV0|D3GBV0_LOTJA Reduced leaflet 1; Found in the gene: LotjaGi1g1v0330500
Domains
11
LotjaGi1g1v0575900.2
– XH/XS domain-containing family protein; TAIR: AT1G13790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LMH6|FDM4_ARATH Factor of DNA methylation 4; TrEMBL-Plants: tr|A0A0S3SGA0|A0A0S3SGA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0575900
Domains
13
LotjaGi3g1v0350700.2
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
Domains
13
LotjaGi3g1v0350700.3
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
Domains
13
LotjaGi3g1v0350700.4
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
Domains
13
LotjaGi3g1v0350900.1
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350900
Domains
13
LotjaGi5g1v0266300.1
– Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT3G22430.1 RNA recognition motif XS domain protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|K7LKH7|K7LKH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0266300
Domains
7
LotjaGi5g1v0313400.1
– Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT3G22430.1 RNA recognition motif XS domain protein; Swiss-Prot: sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|V7BEC1|V7BEC1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0313400
Domains
8
LotjaGi6g1v0061200.1
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200
Domains
13
LotjaGi6g1v0061200.2
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200
Domains
13
LotjaGi6g1v0061300.2
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300
Domains
12
LotjaGi6g1v0061300.3
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300
Domains
12
LotjaGi6g1v0061300.4
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300
Domains
12
LotjaGi6g1v0223200.1
– XH/XS domain-containing protein; TAIR: AT1G80790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9SAI1|FDM5_ARATH Factor of DNA methylation 5; TrEMBL-Plants: tr|I1MIE9|I1MIE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223200
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd06456 CDD 1 3.33