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GO:0031047

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Gene silencing by RNA
Full defintion Any process in which RNA molecules inactivate expression of target genes.
Subterm of

Relationships

The relationship of GO:0031047 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCtb
PMID
Genetic analysis of RNA-mediated transcriptional gene silencing.Matzke M, Aufsatz W, Kanno T, Daxinger L, Papp I, Mette MF, Matzke AJ
Biochim Biophys Acta. 2004 Mar 15; 1677 (1-3): 129–41.PMID: 15020054

The 'nuclear side' of RNA interference (RNAi) is increasingly recognized as an integral part of RNA-mediated gene silencing networks. Current data are consistent with the idea that epigenetic changes, such as DNA (cytosine-5) methylation and histone modifications, can be targeted to identical DNA sequences by short RNAs derived via Dicer cleavage of double-stranded RNA (dsRNA). To determine the relationships among RNA signals, DNA methylation and chromatin structure, we are carrying out a genetic analysis of RNA-mediated transcriptional gene silencing (TGS) in Arabidopsis. Results obtained so far indicate that in response to RNA signals, different site-specific DNA methyltransferases (DMTases) cooperate with each other and eventually with histone-modifying enzymes to establish and maintain a transcriptionally inactive state at a homologous target promoter. Processing of dsRNA in Arabidopsis occurs in the nucleus and in the cytoplasm, where distinct Dicer-like (DCL) activities are thought to generate functionally distinct classes of short RNAs. RNA silencing pathways thus operate throughout the cell to defend against invasive nucleic acids and to regulate genome structure and function.

Associated Lotus transcripts 44

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0013419.1
– Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1|
GO terms
1
Lj0g3v0020739.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
GO terms
1
Lj0g3v0079859.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
GO terms
1
Lj0g3v0157459.1
– Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1|
GO terms
1
Lj0g3v0240679.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
GO terms
1
Lj0g3v0241289.1
– PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1|
GO terms
1
Lj0g3v0241289.2
– PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1|
GO terms
1
Lj1g3v1386430.1
– Reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1|
GO terms
1
Lj1g3v1386440.1
– Reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1|
GO terms
1
Lj1g3v1387020.2
– PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] gi|356516458|ref|XP_003526911.1|
GO terms
2
Lj2g3v2598830.1
– Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1|
GO terms
1
Lj3g3v2168470.1
– XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1|
GO terms
1
Lj4g3v2861660.1
– PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] gi|356508886|ref|XP_003523184.1|
GO terms
2
Lj5g3v2046030.1
– Uncharacterized protein TCM_020625 [Theobroma cacao] gi|508713788|gb|EOY05685.1|
GO terms
1
Lj6g3v1177220.1
– XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1|
GO terms
1
Lj6g3v1880230.1
– PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1|
GO terms
1
Lj6g3v2257830.1
– PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] gi|356528785|ref|XP_003532978.1|
GO terms
1
LotjaGi1g1v0089300.1
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300
GO terms
1
LotjaGi1g1v0089300.2
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300
GO terms
1
LotjaGi1g1v0330500.1
– Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT5G23570.1 XS domain-containing protein / XS zinc finger domain-containing protein-like protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|D3GBV0|D3GBV0_LOTJA Reduced leaflet 1; Found in the gene: LotjaGi1g1v0330500
GO terms
1
LotjaGi1g1v0331200.1
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331200
GO terms
2
LotjaGi1g1v0331200.2
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331200
GO terms
2
LotjaGi1g1v0331400.1
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.2
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.3
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.4
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.5
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.6
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.7
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0331400.8
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400
GO terms
2
LotjaGi1g1v0575900.2
– XH/XS domain-containing family protein; TAIR: AT1G13790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LMH6|FDM4_ARATH Factor of DNA methylation 4; TrEMBL-Plants: tr|A0A0S3SGA0|A0A0S3SGA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0575900
GO terms
1
LotjaGi3g1v0350700.2
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
GO terms
1
LotjaGi3g1v0350700.3
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
GO terms
1
LotjaGi3g1v0350700.4
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
GO terms
1
LotjaGi3g1v0350900.1
– XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350900
GO terms
1
LotjaGi4g1v0416800.1
– Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KP14|I1KP14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0416800
GO terms
2
LotjaGi5g1v0266300.1
– Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT3G22430.1 RNA recognition motif XS domain protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|K7LKH7|K7LKH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0266300
GO terms
1
LotjaGi5g1v0313400.1
– Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT3G22430.1 RNA recognition motif XS domain protein; Swiss-Prot: sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|V7BEC1|V7BEC1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0313400
GO terms
1
LotjaGi6g1v0061200.1
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200
GO terms
1
LotjaGi6g1v0061200.2
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200
GO terms
1
LotjaGi6g1v0061300.2
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300
GO terms
1
LotjaGi6g1v0061300.3
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300
GO terms
1
LotjaGi6g1v0061300.4
– XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300
GO terms
1
LotjaGi6g1v0223200.1
– XH/XS domain-containing protein; TAIR: AT1G80790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9SAI1|FDM5_ARATH Factor of DNA methylation 5; TrEMBL-Plants: tr|I1MIE9|I1MIE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223200
GO terms
1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0031047
Biological process Gene silencing by RNA 1 2.27