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LotjaGi5g1v0272000.1

Overview

Field Value
Gene ID LotjaGi5g1v0272000
Transcript ID LotjaGi5g1v0272000.1
Lotus japonicus genome version Gifu v1.2
Description Diphthine synthase-like protein; TAIR: AT4G31790.1 Tetrapyrrole (Corrin/Porphyrin) Methylase; Swiss-Prot: sp|O81769|DPH5_ARATH Probable diphthine methyl ester synthase; TrEMBL-Plants: tr|A0A0R0JDS4|A0A0R0JDS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0272000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:58558516..58561960) extracted from Lotus japonicus Gifu genome v1.2.

GTGCGAAATCACATTAAAAACCCATGTTGGATGAGTGAGTCAGCTTTCTATGCGGCATATAAGGATTTGTATTTTTTTCG CTTTTCAATCAATCCAAACATACCAATGATACCATGATCACTTCATTTTCTCCCCATCCAAACAAAATTATGAAATCATA TCACTATTCTTAATTTTCTTTCCTTTTTCACTTATACATCCAATCCAACCAAAGGAAAAATGTTCCTATAAGGAGTAGGG GCAGACACATTCGAAACTTACTCGGACTCTGAGCGCCTTGCCTCTCCCTCCGCCGCCATCCGCCATACTCCGGGCACAGG TTGTTACCGTCCTCCGCACTCCGCCGTCTACGACCTTCCTAGCTGTCCTCACCAGAAGCAAGTGCGGCGGCGCTATGGTC AATAGAAACTGAAATTCACCATCACCATCACCATCACCATCACGATGCTGTACATAATCGGTTTAGGGTTAGGCGACGAG CGAGATATAACACTGAAAGGACTAGAAGCAGTGAAGAAATGCGACAAGCTTTACATGGAAGCCTACACTTCCCTCCTCTC CTCCGGTCTCACCACCACCGCGCTCGAAACCCTCTACGGCAAACCCATCACTCTCGCCGACCGAGAATTCGTCGAGGAAC GAGCAGACGAGTTTCTCTCTGAAGCTCGCAACGCCCATGTCGCGTTCCTCGTTGTTGGGGACCCGTTTGGAGCTACCACT CATGCTGATCTCGTTGTTCGAGCAAAGAAGATGGGGATTGTTGTTGAAGTAGTGTACAATGCTTCGGTGATGAATGCTAT TGGGATTTGTGGGCTTCAGCTCTATCGTTATGGCGAGACTGTGTCTATTCCGTTTTTCACTGAGACTTGGAGACCTGGTA GCTTCTATGAGAAGATTGAGAGGAATCGAAGCATGGGGTTGCACACTCTTTGCTTGTTAGGTTAGCTTGTTTTTGCTTTC ATTGATTCATATTTGGGTGGTTTGTTATGTTGTAAATGCTTATTCTTCTATAGGTGGATCAGCTGAAAACTCAACTTTTT TTACTAAGGGTGTGTTTGGGTAAACAGCTTAATTAAGCACTTATGGCCATAAGCGCTTGTCGCATAGGCCCTTGTTTATA GGCTAATTTTAGAAGCTTATTGAAATGAGCTGAAAATAGATTATAGGTAAGCTGCATAAGCTCTTATTCACAAGCTAATA TAAAGTCTAAACAGCTTGTGAAAATAAGCTCGAAACAACTTATGGGGGGTCATAATTTACCTAAGCTCTGTCATACACTT GCTTAAACGTTTATACTATAAGATAAGCTTAAATAAGCTCTTTCGGACAAGGCCTAAATATGTTATCTTCTTATTCCTGG AATCGAATGCCAAAGCCCAGAGAATCATTTAAATATAATATGTTTTACTCTTTTAATCAAATAATTGTATCTGAAGTTGG TGACAGCATTGGAGGAAATCTTCTTCTTCTTTGTTTCTTTGGCAATTGTGCTACTAAAGATTATCCCTTTCTGTTTCTTG AGAACAAGCTAATGTAATTTTCAATTTGGTGTGGTTGCAGATATTCGAGTGAAGGAACCCACACTTGAATCTCTGTGCAG GTTGGTTTTTGCTTTGTTTTTGTTGGTTGCTAATGTAGAAAGAAACCATCAAGTATGGGTTGTTGAGTTGCTCTGTGGAA CATTCTTATGTTGTGCCTAGTTTCATGGCATTGAGTGGTTTGTTCCTTATTACATGTTTTTCTCTTTATCTGCTTGCTCT TTGATTGTATTTTTTTTGTATGGTGACTTCAGGGGTAGAAAAACTTATGAACCGCCCAGATATATGACTATAAACACAGC CATTGAGCAGCTGTTGGAGATTGCGCAAGCACATGAAGAACCTAGTGAGTCCCTTGAGCATTTACATCACTCTATGCATC TTGCTTGTACTAATATCCTGAGATATACACTTGAAATTTGATCTGTATTCTACTTTATTTGCCTGAAACATATTATGACA AGTATTGTTATCACAGTGGAAGTTCCTCCACCATAGAGGGTGAAAATAAAATGATATGTTTTCCTTGTATGTTAATGATT CACCGCTGCTATCAAACAATTTATCTAAGTGTTTTTCACTGAATTCATTCTTCCATGGCAATTTGTAGCTATTTAATAAG GTTGTCATGACCTTGATTTAGACATTTAGTGGACTTGTCAGAAAAAAATAACATTTAAGACACCAATTACAGTGTGTGTA TCTGTATGTATCTGTGCGCATTGCAAATATTTATTATTCTAAGATCTCAGTAAAGGGAACCATAATGGTAAAGTTATGTT AAATGTTATGTGAGCAGCCAATGAATCAAAACAAAATGATTTCATAGCTAAATAACAAACAGAGCATCACAATTGCAAAT TGAGGGACAAATTCACAAATCACAATTTAGGTCAATATAGGTTACTGAATAATGACTCAGTTCACTGAACATAATGAAGA GTGAAGGATGGTCTGATGGCGGGACTGGGTTCATCTCGCTGGTGCTGGGGTCAGCTCGACACAGCTGGGGTTTCCACTTA CCATAGCATGGCTAATTCACCATCATCAGCCTTCTGGGTTTCATTGCAGCCTTGTGGCGATGAATTTGTTCATGCCTACA GGTTCGTGACTTTGTTCATGTAGGGGGAGCTATGGGGTTGAGAGTTGAGAGTTATTTTCTATGCCTGTACTGTATGTATG GATCATAGGTGTGTCTTATATAATATTTGCTGATTAGGAGCCAATTCTTCACTGTGATTAGAGTTTGTATTCTTCTCATA TGGTTTGCCTTTTAGTTCTCACGACAAAACATCACCCTCTTTGTTTTGCAGCATACACTGAAGATACCGAATGTGTTGGG TTCGCTCGGCTTGGAAGCGAAGATCAGATGATAGTAGCTGGAACAATGAAGCAGTTGCAGTTGGTTGACTTTGGAGCACC TTTGCATTGCCTTGTCATAACAGGGAAGACCCATCCCTTGGAAACAGAAATGTTGGATTTCTACAGATGCAGGACCTAGT GGTCATTACGACAAAAGTACCATTTTAAGTCAGAAATGGCTTGTTTGATTATGTTGAAGGAGCCCTTATATTTTGTTCTT TTGTGAAAGCTTTTGCTTGTCAATTAGGGACTAAAGTTAGAAAGAAAAAAAGCTAGCAACACACTCTTTTGAACACACTC CTTAACACACTTAAATGTGTTCACTTTTAAAAAATTAAACTAGTCATAGTGACATATATGTCTTAAGAATTTTCAGCTCA TGACATGTGTTAAAATATTATTAGATTAGCTAGGGCTAGAGTGATTTTAACGCACATTTACTTGGGTTGTTTACCCTAAT CCCTTTTAAATTGCAGCAAAGGATATTTTTCCATGACATTTGTCTCACGTCACTATATTATCTTTCAATACATTTATTCG ATTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0272000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGTACATAATCGGTTTAGGGTTAGGCGACGAGCGAGATATAACACTGAAAGGACTAGAAGCAGTGAAGAAATGCGA CAAGCTTTACATGGAAGCCTACACTTCCCTCCTCTCCTCCGGTCTCACCACCACCGCGCTCGAAACCCTCTACGGCAAAC CCATCACTCTCGCCGACCGAGAATTCGTCGAGGAACGAGCAGACGAGTTTCTCTCTGAAGCTCGCAACGCCCATGTCGCG TTCCTCGTTGTTGGGGACCCGTTTGGAGCTACCACTCATGCTGATCTCGTTGTTCGAGCAAAGAAGATGGGGATTGTTGT TGAAGTAGTGTACAATGCTTCGGTGATGAATGCTATTGGGATTTGTGGGCTTCAGCTCTATCGTTATGGCGAGACTGTGT CTATTCCGTTTTTCACTGAGACTTGGAGACCTGGTAGCTTCTATGAGAAGATTGAGAGGAATCGAAGCATGGGGTTGCAC ACTCTTTGCTTGTTAGATATTCGAGTGAAGGAACCCACACTTGAATCTCTGTGCAGGGGTAGAAAAACTTATGAACCGCC CAGATATATGACTATAAACACAGCCATTGAGCAGCTGTTGGAGATTGCGCAAGCACATGAAGAACCTACATACACTGAAG ATACCGAATGTGTTGGGTTCGCTCGGCTTGGAAGCGAAGATCAGATGATAGTAGCTGGAACAATGAAGCAGTTGCAGTTG GTTGACTTTGGAGCACCTTTGCATTGCCTTGTCATAACAGGGAAGACCCATCCCTTGGAAACAGAAATGTTGGATTTCTA CAGATGCAGGACCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0272000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLYIIGLGLGDERDITLKGLEAVKKCDKLYMEAYTSLLSSGLTTTALETLYGKPITLADREFVEERADEFLSEARNAHVA FLVVGDPFGATTHADLVVRAKKMGIVVEVVYNASVMNAIGICGLQLYRYGETVSIPFFTETWRPGSFYEKIERNRSMGLH TLCLLDIRVKEPTLESLCRGRKTYEPPRYMTINTAIEQLLEIAQAHEEPTYTEDTECVGFARLGSEDQMIVAGTMKQLQL VDFGAPLHCLVITGKTHPLETEMLDFYRCRT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10882
1 270 270 1.6E-136 –
Gene3D
G3DSA:3.40.1010.10
1 113 113 3.3E-43
IPR014777
TIGRFAM
TIGR00522
1 265 265 1.3E-96
IPR004551
PIRSF
PIRSF036432
1 271 271 3.5E-104
IPR004551
Hamap
MF_01084
1 270 270 27.136
IPR004551
PANTHER
PTHR10882:SF0
1 270 270 1.6E-136
IPR004551
CDD
cd11647
1 256 256 2.36807E-138
IPR004551
Pfam
PF00590
1 238 238 4.9E-23
IPR000878
SUPERFAMILY
SSF53790
1 267 267 7.07E-65
IPR035996
Gene3D
G3DSA:3.30.950.10
114 271 158 2.3E-71
IPR014776

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004164
Molecular function Diphthine synthase activity Catalysis of the reaction: S-adenosyl-L-methionine + 2-(3-carboxy-3-aminopropyl)-L-histidine = S-adenosyl-L-homocysteine + 2-(3-carboxy-3-(methylammonio)propyl)-L-histidine.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0017183
Biological process Peptidyl-diphthamide biosynthetic process from peptidyl-histidine The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0272000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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