Transcript — View — Lotus Base

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LotjaGi5g1v0273600.2

Overview

Field	Value
Gene ID	LotjaGi5g1v0273600
Transcript ID	LotjaGi5g1v0273600.2
Related isoforms 1	LotjaGi5g1v0273600.1
Lotus japonicus genome version	Gifu v1.2
Description	BTB/POZ domain-containing protein; TAIR: AT5G03250.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp\|Q9LYW0\|Y5325_ARATH BTB/POZ domain-containing protein At5g03250; TrEMBL-Plants: tr\|G7I521\|G7I521_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi5g1v0273600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:58701651..58703711) extracted from Lotus japonicus Gifu genome v1.2.

TTTTCTTGCTGTGTCACCAGTTTCCACTGATATCAAGAAGCAAAGTACTAGAAGGTTACATGAAAGATCTATCAAGTGAG AATGAAAAATCTGTTTTGGAGCTTCATGACCTACCAGGTGGAGCAAAGGCCTTTTTGCTTGTGGCTAAGTTCTGTTATGG TGTCAAAATGGAGTTAACTCCATCCAATGTAGTTATCCTAAGATGTGCATCTGATTACCTTCAAATGAGTGAGGACTATG GTGAAGGGAACCTGATCATACAAACTGAAAATTTCCTTAACCACATATATGGATACTGGACTGACACACTCAAGGCTCTT AAAACATGTGAAGAGGTCTTACCTTTTGCTGAAGAGCTTCACATCACTTCTAGAAGCATCCACTCTCTGGTGCTGAAAGC TGCAGATCCAAGTCTTGTTATTTTGCCAATCTCTTCAGGTCCAACAAGCATTGTTCAGAGTCCAGAGGATCATGGAGATC TGTGGAATGGAATAAGCCTAACATCAAAGGAAACAACAGGTGAAGATTGGTGGTTTGAGGATGTGTGTTCTCTTAGCTTG CCATTGTATAAGAGATTCATGCTTGGTGCTATTGCAAGACACATGAAGCCTAGAAGAATTGCTGGTTCCCTTGTTTACTA TGCAAAGAAGCATATCCCCTCCTTGAACAATGGAAACTCATCTTCCTCTGCTAATTCTTCTAAGTCATCTCTTTCTGAAG CTGATCAGAGGAATCTCATTGAAGAAATGGTGGAGTTGCTTCCAAATGAAAAGGGGCTAACACCAACCAAGTTTTTACTC AGGAGTTTGAGAACAGCAATGGCTTTGTATGCTAGCTCATCTTGCTGTGCAAGCTTAGAGAAAAGGATTGGTTCCCAATT AGATGAAGCTGATTTGGAAGATCTTTTGATTCCAAACATTGGCTACTCAATGGAGACTCTTCATGACATTGATTGTGTCC AGAGAATGCTTGATCATTTCATGATTGTGGATCATGATGATGTTGATTCAACTTCTAATGATATAGAGGAAGAGAGGAGA TTAGTTGCAGGTCCTCAACGTTTGAGTCCAATGGCAAAAGTGGCTGAATTGATGGATGGTTATTTAGCAGAAGTGGCACC TGATGTTAACTTGAAGCTGCCAAAGTTTCAATCACTTGCTGCTCTAGTTCCTGATTATGCCAGGACATTGGATGATGGTA TATACCGTGCAATTGATATATATCTCAAGGTACAAAAAAATAGATCTTTGATTTGCTTTCTGTGTGCACTTAATGTTTTG TTATACTTAACATGTTTATGAAAAGTTCAATATCACATTAATAAAATATTAAAAAAGTATGTGGATGAGTTTCCCACTGG ACATCAGCAAAAAATGTATACTACTAAATGTCTATATATTTATTTAACATGTAATTGTACACTCAAATTTTGTGCTTGAC ATAAGTGGCATGGACCATTTTGATATTGAAAGTAAGCCAGATGATCAAGAAAAGTAGAATCAATGTTTATCTTTGAAAGA CTTTAATGGATTTCTCAATTTTCAGACTCATCCCTGGATGACAGACTCAGAGAAGGAACAAATCTGCAGGCTCATGAATT GCCAGAAGCTGTCTTTGGAAGCCAGCACCCATGCAGCCCAAAATGAGAGGCTCCCACTTAGAGTTGTTGTCCAAGTCCTG TTCTTTGAACAGCTGAAGCTCAGAACCTCTGTAGCTGGTTGGTTTTTTACTTCTGAAAACCTTGAAAACACACAGAACCT GAGTGGAAACCTTGCTCTGCTGAGGAATATTGATGGGAACACACCACCAAACCCTGTCTTGGCATTTGACAACATGAAAG ATAGAGTTTCTGAGCTTGAGAAGGAGTGCTTGACCATGAAGCATGAATTGGAGAAAATGATGAAGTCTAATAAGGGAAGT TGGAACATGATTCTCAGGAAATTGAGTTGCAGGTTGATTCCTAAGCCCTCTAATGGGAAAGTCTCCAAGCCTTGCAGGAA GTCCAAGATTTCACCAGCACAGGTAGAAGAAAATGCTTTGGCAGACCTGGCAGTGAAGTGA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0273600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGATCTATCAAGTGAGAATGAAAAATCTGTTTTGGAGCTTCATGACCTACCAGGTGGAGCAAAGGCCTTTTTGCT TGTGGCTAAGTTCTGTTATGGTGTCAAAATGGAGTTAACTCCATCCAATGTAGTTATCCTAAGATGTGCATCTGATTACC TTCAAATGAGTGAGGACTATGGTGAAGGGAACCTGATCATACAAACTGAAAATTTCCTTAACCACATATATGGATACTGG ACTGACACACTCAAGGCTCTTAAAACATGTGAAGAGGTCTTACCTTTTGCTGAAGAGCTTCACATCACTTCTAGAAGCAT CCACTCTCTGGTGCTGAAAGCTGCAGATCCAAGTCTTGTTATTTTGCCAATCTCTTCAGGTCCAACAAGCATTGTTCAGA GTCCAGAGGATCATGGAGATCTGTGGAATGGAATAAGCCTAACATCAAAGGAAACAACAGGTGAAGATTGGTGGTTTGAG GATGTGTGTTCTCTTAGCTTGCCATTGTATAAGAGATTCATGCTTGGTGCTATTGCAAGACACATGAAGCCTAGAAGAAT TGCTGGTTCCCTTGTTTACTATGCAAAGAAGCATATCCCCTCCTTGAACAATGGAAACTCATCTTCCTCTGCTAATTCTT CTAAGTCATCTCTTTCTGAAGCTGATCAGAGGAATCTCATTGAAGAAATGGTGGAGTTGCTTCCAAATGAAAAGGGGCTA ACACCAACCAAGTTTTTACTCAGGAGTTTGAGAACAGCAATGGCTTTGTATGCTAGCTCATCTTGCTGTGCAAGCTTAGA GAAAAGGATTGGTTCCCAATTAGATGAAGCTGATTTGGAAGATCTTTTGATTCCAAACATTGGCTACTCAATGGAGACTC TTCATGACATTGATTGTGTCCAGAGAATGCTTGATCATTTCATGATTGTGGATCATGATGATGTTGATTCAACTTCTAAT GATATAGAGGAAGAGAGGAGATTAGTTGCAGGTCCTCAACGTTTGAGTCCAATGGCAAAAGTGGCTGAATTGATGGATGG TTATTTAGCAGAAGTGGCACCTGATGTTAACTTGAAGCTGCCAAAGTTTCAATCACTTGCTGCTCTAGTTCCTGATTATG CCAGGACATTGGATGATGGTATATACCGTGCAATTGATATATATCTCAAGACTCATCCCTGGATGACAGACTCAGAGAAG GAACAAATCTGCAGGCTCATGAATTGCCAGAAGCTGTCTTTGGAAGCCAGCACCCATGCAGCCCAAAATGAGAGGCTCCC ACTTAGAGTTGTTGTCCAAGTCCTGTTCTTTGAACAGCTGAAGCTCAGAACCTCTGTAGCTGGTTGGTTTTTTACTTCTG AAAACCTTGAAAACACACAGAACCTGAGTGGAAACCTTGCTCTGCTGAGGAATATTGATGGGAACACACCACCAAACCCT GTCTTGGCATTTGACAACATGAAAGATAGAGTTTCTGAGCTTGAGAAGGAGTGCTTGACCATGAAGCATGAATTGGAGAA AATGATGAAGTCTAATAAGGGAAGTTGGAACATGATTCTCAGGAAATTGAGTTGCAGGTTGATTCCTAAGCCCTCTAATG GGAAAGTCTCCAAGCCTTGCAGGAAGTCCAAGATTTCACCAGCACAGGTAGAAGAAAATGCTTTGGCAGACCTGGCAGTG AAGTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0273600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKDLSSENEKSVLELHDLPGGAKAFLLVAKFCYGVKMELTPSNVVILRCASDYLQMSEDYGEGNLIIQTENFLNHIYGYW TDTLKALKTCEEVLPFAEELHITSRSIHSLVLKAADPSLVILPISSGPTSIVQSPEDHGDLWNGISLTSKETTGEDWWFE DVCSLSLPLYKRFMLGAIARHMKPRRIAGSLVYYAKKHIPSLNNGNSSSSANSSKSSLSEADQRNLIEEMVELLPNEKGL TPTKFLLRSLRTAMALYASSSCCASLEKRIGSQLDEADLEDLLIPNIGYSMETLHDIDCVQRMLDHFMIVDHDDVDSTSN DIEEERRLVAGPQRLSPMAKVAELMDGYLAEVAPDVNLKLPKFQSLAALVPDYARTLDDGIYRAIDIYLKTHPWMTDSEK EQICRLMNCQKLSLEASTHAAQNERLPLRVVVQVLFFEQLKLRTSVAGWFFTSENLENTQNLSGNLALLRNIDGNTPPNP VLAFDNMKDRVSELEKECLTMKHELEKMMKSNKGSWNMILRKLSCRLIPKPSNGKVSKPCRKSKISPAQVEENALADLAV K

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
CDD	cd18312 View details on cd18312 Search for proteins/transripts with this domain View external data on cd18312	3	66	64	2.32388E-23	–
SUPERFAMILY	SSF54695 View details on SSF54695 Search for proteins/transripts with this domain View external data on SSF54695	6	72	67	1.1E-5	IPR011333 Show description in modal box View details on IPR011333 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR32370:SF123 View details on PTHR32370:SF123 Search for proteins/transripts with this domain View external data on PTHR32370:SF123	7	530	524	8.2E-232	–
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	7	530	524	8.2E-232	IPR043454 Show description in modal box View details on IPR043454 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03000 View details on PF03000 Search for proteins/transripts with this domain View external data on PF03000	156	417	262	1.7E-90	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51649 View details on PS51649 Search for proteins/transripts with this domain View external data on PS51649	156	441	286	91.674	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	484	511	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0273600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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