Transcript — View — Lotus Base

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LotjaGi5g1v0274300.2

Overview

Field	Value
Gene ID	LotjaGi5g1v0274300
Transcript ID	LotjaGi5g1v0274300.2
Related isoforms 1	LotjaGi5g1v0274300.1
Lotus japonicus genome version	Gifu v1.2
Description	N-acetyltransferase, putative; TAIR: AT2G39000.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein; Swiss-Prot: sp\|Q03503\|NAA30_YEAST N-alpha-acetyltransferase 30; TrEMBL-Plants: tr\|I3T8M0\|I3T8M0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0274300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:58789724..58792876) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGTTGAACTTGTGATATTAGCTTAGCTAACTCAACTTGTAACCCTTCTTCTTATGTAATGATTCACTCTTCCTCAC AGAGAATCTCAGGATTCTTTTCAGTGAGCTGAAAGATAGATAGATAGATAGATAATAGACCAAGACACCCTCCACGAAAT GCGGTCAATTCCTCTTGGAACCTCAGTATCTCCAACTCCTATAAACACTCCAAAAATCTCATGTTTCAATATTAGTTTTA AGAAACCAACCACTTTTCCTTCTTGGGTTTCATCTCCCTCTCATGAACAAGGTACCCTTTATTTGTTTTGCATAATTTGG TTGTTCTGTTGTTCACACTGATGGATCATGGATGGGTTGTGTGTATTTATGTATTTTCTTTGCTTGATTGTTAGTTATTT TCTTTTGAAGGAATTCAGTAGATGGGGTTGTTGAATTTGTTGTCAAACCCTTTAATTGATATATGATGGAGTGGATTAAT GCCTGGCTATTTGAAATTTATCCAATTCTTGGAAGGTGATGAATGATGTCTGAGAAATTTGAAAGCGGTGGTCAACTTGT CCTCTTAGGAAGAGTGGCTAGAGAAAATTGAGGGAAAAATAAAGGTTAGATGATTGGTGGAGAATTTAACAAGACAGTTT TCAATGAGTGTTGCTGGGAGGCAACAATTGTACATGAGTTTCTGGAATAATATTTACTGTCATTTAAGCTATTTTCATCA TCAGAAAATGGTAATGGCATTCCTCAAAATCATTTAGAAACACACATAATTCACTTCTTAATTCTAAACCTTTTCATATT TATCTTAGTCATCAATGATGAGCATCTTATACAAGCAAAGTCAAACTCATTGTCTAAGTTTCCATTTTCATTATTATGGA ATTAGATTTCACATAGTACAAAAGCATAATCATTTTGGCCATGTTTATTCATGGAAACCTACTGTAAATGGGAGTAGAAG TCAAGGGGTGAACTGGATGAGGAGCGGTGGAACATTTCTTATTTAGGGTGCGTTTGAATAAACAACTTCAATAAGCATGT ATAGCATTAAACGCTTAGCGCAGAAGCACTTATTTATAAGTTTATTGAAATAAGCCCAACATAGATTATAGGTAGTTATA AACGCTTATTGATGAGCTAATTTGACAGCTTGTGAAAATAAACTCAAACAAGCTCATAGGTAGGTTATTAGCTATTTATT AGGCTCTCTCAATCCCAAATACTTGCATAAATGTTTCTGCTATATAAGCTCTTCCAAATGGCGCCTTATTATACTTTGAC ATGTTAACTTGGCTAGGAACTAAAGCTATGGTGTATGGATGTAGGACTATGCAGAGCCAGTCAAGTTGTTGATTTATTCC CAACTACGTCTCCTGAAATTATTGTCCGAGAGGCCAGGTTAGAGGACTGTTGGGAAGTGGCAGAGACTCACTGCAGCTCC TTCTTCCCAGAATATTCCTTCCCATTAGATTTTGTGATGAGGATGGACAGATTGGTGGCAATGTTAGCGGGATTCTCTAT ACCGAACGGCTGCAAAAGAACATGTTTGGTTGCTGTTATTGGCAGCTCTCTTGACGAAACTTTTTTATTTGGAACTGAAG ATTTCAAGATTGGTGGCTTTGATGGGAAATTGAGCCTCAACAAGGGATATGTGGCTGGCATATTGACAGTCGATACCGTT GCGGATTTTCTTCCTAGAAGGGCACCACTACGACAGAGAAGGTGAGTTAAAGTTTGTTTCTGGAATATGGATTAGTGAAG ATTACTGAATATTTATGTGTCTTTCTGATTTATGACATAAATCTGACCTGTAGGATGTTGTGAACTTTATATTCTTTTGT GTCTTCATGTGGCTCCATCATCCTTAAGAATGGCTTCTAAGACATTTATCATTCTAAGTGATTAAATAATTTCAATATCA TCTTAGGGCTTTGATTAGTTGTGTGCCTAATAAACACATACTCATGCAAGAATTATTCAGATAAAGAGCAGGATTGTGTG AAAAGAATATATGCATATATTGACTGTTATACCAAACATCAGAAATGTTATCTGGAAATAGTTTTTTGCACCAGCAGATG AAAATGTTTCCTGAAAAGCATTTATTACACTGAAAACATAAACCTCAATATTTTTCAGATAGTTAAGTTCTGTTAAATCA ATCATACATACCCTAAGTATCTAGAGGCCTATCTTAAGTAGCCATATGATATCTTTGTTTAGCATAAAACCTCTTGCGTT TGTGCTACGCTGCAAAAATAACCAATTAAATGTTCTTTCGCTGCACATCCATAGTTTATTGGTCAATTTGTTGCCTTTCA CTTGGTTAAAATTGAAGTTCAGATCTCCATGGTAAAATTGGACTTGCCTTAAACAAAATTTGCCAAAAATCTTATTTGGT GTTGACCTAGAATCTTATCTTTTATGAATACTTTTGACTCCTCTTCAAAATGGTTAACTTCTTATTTTTCTAATTCTGTA GTGTGTGGGCCATGTTGTGTTTTAACATTCTTAGTTTACATTTCATTATGTAGGACTGGAATCGCATACATATCAAATGT GGCGGTAAGGGAAAAATTTAGGCAAAAGGGAATAGCTAAACTATTGGTGGCTAAGGCAGAATCACAGGCCAGAAGTTGGG GTTGTCGTGCCATTGCATTACACTGTGATTTGAAAAATCCTGCAGCCACAAAGTTATATAAAGGCCAAGGTTTCAAATGT ATCAAGGTTCCAGAAGGAGCTAACTGGCCTCAACCAAAGACTTCACCGGATATTAATTTCCACTTCATGATGAAGCTTCT CAACAAACCAGTTGCTTCTAAATCTAATTAGATGCTAAATTGGACAGATTATCTGTGTTGTAATACACAACAAATTTAAG AGGGGAAAAAAGTAATTACAACTAAGGGGACTGTCTGTTATTGAAGTGCATATTGTAAGTAAACCAAGAAATTAGAGGAA AAATCATTTGAGAACCTTTTAGATTGCACCAGTAGCAAGCATTTGTACAGTTACTGGCATTCACTTTACCCCAGTGCATG CAGACAAACAGCTTCGTGCAGAATTGGAGTTAGAATTGCTGAGAGATACTAATTTGTAAAAAAGAGTTGATTTTTCACAT TTTTTACACCTATATTTCACCCTTTTTTTTTCT

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0274300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACAAGGAACTAAAGCTATGGTGTATGGATGTAGGACTATGCAGAGCCAGTCAAGTTGTTGATTTATTCCCAACTAC GTCTCCTGAAATTATTGTCCGAGAGGCCAGGTTAGAGGACTGTTGGGAAGTGGCAGAGACTCACTGCAGCTCCTTCTTCC CAGAATATTCCTTCCCATTAGATTTTGTGATGAGGATGGACAGATTGGTGGCAATGTTAGCGGGATTCTCTATACCGAAC GGCTGCAAAAGAACATGTTTGGTTGCTGTTATTGGCAGCTCTCTTGACGAAACTTTTTTATTTGGAACTGAAGATTTCAA GATTGGTGGCTTTGATGGGAAATTGAGCCTCAACAAGGGATATGTGGCTGGCATATTGACAGTCGATACCGTTGCGGATT TTCTTCCTAGAAGGGCACCACTACGACAGAGAAGGACTGGAATCGCATACATATCAAATGTGGCGGTAAGGGAAAAATTT AGGCAAAAGGGAATAGCTAAACTATTGGTGGCTAAGGCAGAATCACAGGCCAGAAGTTGGGGTTGTCGTGCCATTGCATT ACACTGTGATTTGAAAAATCCTGCAGCCACAAAGTTATATAAAGGCCAAGGTTTCAAATGTATCAAGGTTCCAGAAGGAG CTAACTGGCCTCAACCAAAGACTTCACCGGATATTAATTTCCACTTCATGATGAAGCTTCTCAACAAACCAGTTGCTTCT AAATCTAATTAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0274300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNKELKLWCMDVGLCRASQVVDLFPTTSPEIIVREARLEDCWEVAETHCSSFFPEYSFPLDFVMRMDRLVAMLAGFSIPN GCKRTCLVAVIGSSLDETFLFGTEDFKIGGFDGKLSLNKGYVAGILTVDTVADFLPRRAPLRQRRTGIAYISNVAVREKF RQKGIAKLLVAKAESQARSWGCRAIALHCDLKNPAATKLYKGQGFKCIKVPEGANWPQPKTSPDINFHFMMKLLNKPVAS KSN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47443 View details on PTHR47443 Search for proteins/transripts with this domain View external data on PTHR47443	11	237	227	2.3E-138	–
PANTHER	PTHR47443:SF3 View details on PTHR47443:SF3 Search for proteins/transripts with this domain View external data on PTHR47443:SF3	11	237	227	2.3E-138	–
Gene3D	G3DSA:3.40.630.30 View details on G3DSA:3.40.630.30 Search for proteins/transripts with this domain View external data on G3DSA:3.40.630.30	29	218	190	3.0E-20	–
SUPERFAMILY	SSF55729 View details on SSF55729 Search for proteins/transripts with this domain View external data on SSF55729	30	212	183	1.03E-21	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51186 View details on PS51186 Search for proteins/transripts with this domain View external data on PS51186	85	236	152	14.609	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00583 View details on PF00583 Search for proteins/transripts with this domain View external data on PF00583	122	205	84	2.2E-14	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd04301 View details on cd04301 Search for proteins/transripts with this domain View external data on cd04301	147	188	42	3.4873E-10	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008080 View details of GO:0008080 AmiGO InterPro QuickGO	Molecular function	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.	Subterm of View details of GO:0016407 View details of GO:0016410

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0274300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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