Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0276000 |
| Transcript ID | LotjaGi5g1v0276000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT3G12090.1 tetraspanin6; Swiss-Prot: sp|Q9C7C1|TET6_ARATH Tetraspanin-6; TrEMBL-Plants: tr|A0A0R0HWS0|A0A0R0HWS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0276000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59024186..59027843) extracted from Lotus japonicus Gifu genome v1.2.
TCATTATCTTGCTTAGCAAAGAAGTCCAAATGGGGTCCATAATCCAAAAGCAAATAGCATCATCTGTAGTTACCAAAAAG ACCATCACTAGTTCTAAAATTCTTTGCTTGCCTTATCGAAACACACATGGAATTGATGCTTCTGCAAATTGTTATATACC ATCAGTTACATGGATAAACATGTCAATTGCATCACTAGAATATTTGAAAAAATAAGGCCGGGAAAGCAGGCAAGAAGGAC AAATTTGGAAAGAAAAAACAACTTCCTTAACAACTAAGAAGTACATGTCATTCTCATTTGCTCATTTTCACAAACTCCAA CTAAAGTTTCTCAATATACTTTTTTTTTTCCATATGTTATCTTCCATGAGAGACAATTCTGTTCGAGTTGAGAACATTCA TGTGCTGGTGGCAGACTAACTCTCTCAGCAGAGGTTCTTTCCATACATAAGACTCAAATTTGAGACATTATTTAAGAGAA ATCAAGCATATACCATTTCAAACCAACCAACCGTCATTTCGTAAGGAAAAATGAATTTGAAATAGCATAACAAACCATAA CTAGTGCCTCTCTCCCAATTTAAATAGAGGTGCCATAAGAATCCCAAGAAGCAACAATACATAAAAAAACTAGGGAGAGA GAGAGAGATGCATAGGTTCAGCAACACAGTGATTGGGTTCTTGAACTTGTTTACACTTCTAGCATCCATACCCATAATTG GAGCAGGTTTATGGATGGCAAGGAGCAGCACAACCTGTGAAAATTTTCTCCAAACACCACTTTTGGTGATTGGTTTTGTT GTGCTTGTGGTATCATTATCAGGCTTCATTGGTGCTTGTTTTCATGTGGCATGTGCACTCTGGTTGTACTTGGTGGTCAT GTTGTTCCTCATAGCAGCACTTCTGGGGTTGACTGTGTTTGGTTTTGGTGTGACTAGCAAGGGTGGTGGTGTGGAAGTGC CTGGTAGAGTTTACAAGGAGTATCGTCTTCAGGATTATTCACCATGGCTGCAGAAGAGAGTGAATGATCCTCGCTATTGG AACACTATCAGGAGCTGTATTTTGGGCTCTAAGACTTGTGAAAAACTTGCTTCTTGGACTCCTCTGGATTATATGCAGAG GGATATGTCTCCAATACAGGTACAATTAATAATATGTAGCTTGTTTCTATTTGTGGTTTGTTTGGACTTTCAACTTTGGT GTGTGTTTGAGGATTCAATTTTCAAATTCTGGCTTTATGTTTTGCTCCTTTGTCTTCTAGTTGTTCTTAATATGTGGAGA GGAGAATCATTTTATCATTTGTGTGGTGTCTGTCATCTTCAGTTGAATTGTAAAATTAAATTCTTAAGAACTCAAAGTTG TGAGCTATTAAAAAGGCTGAATAGGAGAGCTGATTTAGTGGTAGTTTTTTTTGGTTGTTCCTACTACTGGTTGCAAGCAA GTTAACCAATCATAAATTTCCACTATTTCCGCAAAAATGGTCGGTGAACCATCCCTCCACACCATGGTCCATCCCCTCCA TACTATCCATTGAAAGAACTTATTTAAGCTTATTTTATAGTATAAACGTTTATGCAAGTGATCGGAAGAACTTATGTAAA TATTTTATAACATACTTATGAGCTGTTTTGAGCAAAGTTTTATAGGTTGCTCGAACTAATTTATGAATAAGCACTTCTAC ATACGTGTGTAGCCTACTCTGAATTTATTTTGATAACTTTATCAAAGCTATTATTTGGTAAGGATTTATTGACATAAGTG CTTAATTAGGCTGCTAATCCAAACCCAGGTTACATCTCACACTATAAGGTACCAAATATATAATTAACTTTCAAAGACAT TTTCTTGTATTTTTGAATAACATGATATGGTTCAATTGAAGAGAGAAAGTCATTTTCTTTTGAAATACAACTAATGAATA CTAAAACCAGTTATGGTATATACTTGTATAACATATATTTGTCTCTCTAATGCTCTAAATTCCAATTCATTTTTCTAAGT CAAATTGATAAATGCTAATTCATAATTGGTTATGCAGTCTGGATGTTGTAAGCCACCAACTGCTTGCACTTACAACATGG AGTCAACAATGATGAGCCAAGACCCTGATTGCTACAAGTGGAACAATGATCCTACTTTGCTCTGCTATGAGTGTGATTCC TGCAAAGCTGGTGTGCTTGAAGACATAAGAAGGAACTGGCATAAGCTCTCTGTTCTCACTGTCTCCATGCTTGTGCTTCT CATAGGGATTTATTCCATTGGGTGCTGTGCTTTCAGAAATGCAAGAAGGGCTGAAACAGATTATCCATATGGCGAGAACC GGATGACCAAAGTCCGACCCAGATGGGATTACCACTGGTAAGTCCAAACTTAGTACAAAAATTAGGTCATATTTTATTGC ATTTCCCTTCCAATAATGCATGTCTGGATACACGGTGAAAAACTACTGTGAAATAAAATTACGGTGGACAGAAGCAACTT TCTTTGATTTTTGTGGCCATCCACAGTGATTTTGGCTTCATTGTGGTTTTCTACCGTGTATCCAGACATGCACTAAGAAA AATCGAAAAGAAAGAGGAAGAGAAACTATGTTAATATTGGAAATCCAACTTTTTAGGCGGAAAATTTAGTGTGTGTTTGG TTCGGCGTTTGAGAGCCTTAGAATCAATTCTCATTGATCATAATCATTTTTATATGGTTTATATAGATGTTTGACAATCA ACACAGAGAATTGATTGTAGTCCCAAAATTAATTAGATCGTTTGTGAAATTTTATAACTCGATTTCATACCAATACCCTA CAAAAATAAATCACTTTTCCAATCAACATATTCTAACATATATCACTTCGCTTTCAACTTACTTTTACCATAATCTATTC TACTCAAAATCAATTCTCCAGACGTGCACTTACTGGTCTAAGTAGAATTGTTTTTCATGGCATGAACTAGAAATATTTCT AATGCTTTAAATTGAAGTATTAAACATAGTAACTAGAACAAGTCTTTGTCTATGGACTATGGTTCATACTTGTACAAATT TAAATGGTATAAATGAATCATGCTCACCTATGAAGATTCTTAATTTGACTGTTATCTGGTTTGCTTTTTCCACAGGTGGA GGTGGTTGCATAACAGGAGAGAACAACTTTATTAGTCAGCAAATAATCTCTACCATCCATTCATGCATTGATGCTGCATT GATGGTTCAATTCACTAGTTTCTCTGTAAATGGGCATAGAAGGTCTCAAGCACTTTGTTTCTACCAGCTTCCTAAGTGGA TGCTTTTTGTACAGAGCTTGATGAAGAAACAACAGGGAAACGTGTGGGTTAAAGTCCAGCCCAACCAAAAACACTAATGG CTTTGTCTGTTTGTTTTCAAAGTAGCAATCAATGATTGATTTTCATATGCTCTATAAGCCATAACAGGGATCAAATTTTG ATCCACTCCATTATTATTTCATTACTGTCCAGCCTTACAGGCAGTGAATTGAAGGTTGCTTGATTTCTAGCTAGTCAACC ATACATCTAGTAGAACTTATAGGATAAATATTAACCACTAGTGCTTTTTTACCCGCGCGTTGTACGGGGAATATATCTAT TGTATTTGATACATCGATTCATATTTTAAATTATAAATATTTAAGATGCTAAGAATGT
CDS sequence (LotjaGi5g1v0276000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATAGGTTCAGCAACACAGTGATTGGGTTCTTGAACTTGTTTACACTTCTAGCATCCATACCCATAATTGGAGCAGG TTTATGGATGGCAAGGAGCAGCACAACCTGTGAAAATTTTCTCCAAACACCACTTTTGGTGATTGGTTTTGTTGTGCTTG TGGTATCATTATCAGGCTTCATTGGTGCTTGTTTTCATGTGGCATGTGCACTCTGGTTGTACTTGGTGGTCATGTTGTTC CTCATAGCAGCACTTCTGGGGTTGACTGTGTTTGGTTTTGGTGTGACTAGCAAGGGTGGTGGTGTGGAAGTGCCTGGTAG AGTTTACAAGGAGTATCGTCTTCAGGATTATTCACCATGGCTGCAGAAGAGAGTGAATGATCCTCGCTATTGGAACACTA TCAGGAGCTGTATTTTGGGCTCTAAGACTTGTGAAAAACTTGCTTCTTGGACTCCTCTGGATTATATGCAGAGGGATATG TCTCCAATACAGTCTGGATGTTGTAAGCCACCAACTGCTTGCACTTACAACATGGAGTCAACAATGATGAGCCAAGACCC TGATTGCTACAAGTGGAACAATGATCCTACTTTGCTCTGCTATGAGTGTGATTCCTGCAAAGCTGGTGTGCTTGAAGACA TAAGAAGGAACTGGCATAAGCTCTCTGTTCTCACTGTCTCCATGCTTGTGCTTCTCATAGGGATTTATTCCATTGGGTGC TGTGCTTTCAGAAATGCAAGAAGGGCTGAAACAGATTATCCATATGGCGAGAACCGGATGACCAAAGTCCGACCCAGATG GGATTACCACTGGTGGAGGTGGTTGCATAACAGGAGAGAACAACTTTATTAG
Protein sequence (LotjaGi5g1v0276000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHRFSNTVIGFLNLFTLLASIPIIGAGLWMARSSTTCENFLQTPLLVIGFVVLVVSLSGFIGACFHVACALWLYLVVMLF LIAALLGLTVFGFGVTSKGGGVEVPGRVYKEYRLQDYSPWLQKRVNDPRYWNTIRSCILGSKTCEKLASWTPLDYMQRDM SPIQSGCCKPPTACTYNMESTMMSQDPDCYKWNNDPTLLCYECDSCKAGVLEDIRRNWHKLSVLTVSMLVLLIGIYSIGC CAFRNARRAETDYPYGENRMTKVRPRWDYHWWRWLHNRREQLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 267 | 266 | 2.0E-164 | – | |
| PANTHER | 2 | 267 | 266 | 2.0E-164 | – | |
| Pfam | 6 | 242 | 237 | 3.0E-31 | ||
| PRINTS | 7 | 30 | 24 | 2.4E-6 | ||
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| PRINTS | 38 | 64 | 27 | 2.4E-6 | ||
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| PRINTS | 65 | 93 | 29 | 2.4E-6 | ||
| Phobius | 66 | 71 | 6 | - | – | |
| Phobius | 72 | 95 | 24 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 220 | 125 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 221 | 243 | 23 | - | – | |
| Phobius | 244 | 283 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0276000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…