Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0277100 |
| Transcript ID | LotjaGi5g1v0277100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A176WLX9|A0A176WLX9_MARPO Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59254656..59255181) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAAAGAGAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCCGGCAAGTCCACCACCACTGGCCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAGGCCGCTGAGATGAACAAGAGGTCGT TCAAGTATGCGTGGGTTCTTGACAAATTGAAGGCTGAGCGTGAAAGAGGTATCACCATTGATATCGCTCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACAGTTATTGATGCTCCCGGCCACAGGGATTTCATCAAGAACATGATTACTGGAACTTC ACAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCC GTGAGCATGCTCTCCTCGCTTTCACTCTTGGTGTGAAGCAGATGATCTGTTGTTGTAACAAGGTATCTTAATTTGATTCT TTTGTATATTCTATTTGATTCATTTGTATATTCAATCTTGGTCTGA
CDS sequence (LotjaGi5g1v0277100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAAGAGAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCCGGCAAGTCCACCACCACTGGCCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAGGCCGCTGAGATGAACAAGAGGTCGT TCAAGTATGCGTGGGTTCTTGACAAATTGAAGGCTGAGCGTGAAAGAGGTATCACCATTGATATCGCTCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACAGTTATTGATGCTCCCGGCCACAGGGATTTCATCAAGAACATGATTACTGGAACTTC ACAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCC GTGAGCATGCTCTCCTCGCTTTCACTCTTGGTGTGAAGCAGATGATCTGTTGTTGTAACAAGGTATCTTAA
Protein sequence (LotjaGi5g1v0277100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 156 | 156 | 1.4E-65 | – | |
| PANTHER | 1 | 155 | 155 | 2.8E-119 | – | |
| PANTHER | 1 | 155 | 155 | 2.8E-119 | – | |
| SUPERFAMILY | 3 | 155 | 153 | 9.15E-57 | ||
| ProSiteProfiles | 5 | 156 | 152 | 49.232 | ||
| Pfam | 6 | 155 | 150 | 1.2E-44 | ||
| PRINTS | 9 | 22 | 14 | 7.4E-24 | ||
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 7.4E-24 | ||
| PRINTS | 88 | 98 | 11 | 7.4E-24 | ||
| PRINTS | 104 | 115 | 12 | 7.4E-24 | ||
| PRINTS | 148 | 156 | 9 | 7.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0277100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…