Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0278200 |
| Transcript ID | LotjaGi5g1v0278200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Golgi to ER traffic protein 4 like; TAIR: AT5G63220.1 golgi-to-ER traffic-like protein; Swiss-Prot: sp|Q54TH4|GET4_DICDI Golgi to ER traffic protein 4 homolog; TrEMBL-Plants: tr|I1NHC9|I1NHC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0278200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59327806..59335810) extracted from Lotus japonicus Gifu genome v1.2.
TGTCATTATAAATCCTGCAATGGCTATGGTCTATGGATAAGTTCTAGCCACATAACGTTTTCCACTTACAGCCAATCAAA TATAATAATCCTATATGTTTATGCACTGGATTTTATGGTCCTCAGCTTTGACACTTGTATTTGCAAACCCCTACCAACAT TTTCTCCTCTTGTTATGTGGTATACTATATATTTCCAATTAAAGTCATAACATTAATGTTGGTGCAAATTGCAAAATGTA CTGATTTTCCTTAAGCAGTTGATCATGTATCTATGATACGATTCTGGTTTTACCCCCCTCTTCAAATCTTTTAACTGTAA CCAACAAGGTTCAACTTCCTCCGAAAAAAACAAGGTTCAACACAGTTGGCCGATAACTGAGCTCACTAAACATCTAGTCG AGAGTTCGATCCTTGAACGATGTGTATAAATAATGATTTGTTGGGAGAGAAACACTATAATAGCGCAAATTTTAAATTTA TCGAAGTGCAGAGTTCATGAGTAGAACTCCCTCATAAAAATTCAGAAGAACTTAGGTCACATAAAGAACCAAGAAATTTT AAAGCAGAACTAGTCTAATATGTTTCCTTATACCAAAAACTCATCGAAATAAATTTTAATCCATGCTCAACACCCTCGGA ACTTTAATATAAGGCTCCTCATAGCTTGGAACAGAAGCAATCATGGCATCCCTGTGAAGAATACACGACTCTGTCAGCAG AACTAGGCACTAGTTATCCAATCATGTCTAATTGACAAATAGTGAATAAACCACTCACCTGCTGTCAAATGTTTCAGGAG CATTTTCACGCAAATTATTTTCAGACTCTGCAGATAACATGAAATTAGCAACTGAAACTGTGAAGCAAAGCCAATGAACA ATTGCTTTATGCATGAAAGTAGAGGCAGATATATTGTAACATTGAGAATCACTGAACCTATAAAGTGGTGAAAATTTTGT ATACACATGATACTTAGGCTATGTTTGGATATCAGTTGACATCGGTATAAACAGATGTTAGCAGATAAAAAGTGAAGAGA ACCCTTCTCATGGATCGGGATGAAACTGGTACGGTTCATCTGCCAAAATATTGACTTCCTAATAAGATAAGACAGGAATA ACACCAACATTTCTCAGTGAACAGATAGTAGATACTAATCTCATATTTTCAGCACATCAGTACATGAACGAATCTAAGCT ATGTAACACAATCACAATTTACAACAGAATTAAACAACTTGAGAAAGCCGTCCCCATCACAAACATGCCCGAAACTAACA CAAAAAGAAGAAAAAGATGAACGAACATATTTTTAGTGTTTCAAAAGTAATGTTCATGATGTCTTGGCATTAAACTGTAT GCAAAACAATACACACAAAATCCATAAGAAGGACATGAAATGTATTAGAAATCTAGTATAAATAGGAAACCCATTGTAAT ATTTTACTATCAATTTTAATAATGAATGAATATTGGAATCAATTTCCCTATTCTCCTTCTTGCTATGTTTGGGATCCCAT TGAAGAAATCCATGTGATTTCTAACAAAATGTATGTTTGGTCTAACGTTACTCTAAACGAAACGTGATTTCATATCTCAA GCTATCAACAGAGAACTTTGTATTTGCCACATTGAGTTTAACGTGGATCAGAGAAGCATAATTCTATTGCGTTGAGTTCA ACAGAAATCCAAATGCAAACGCAAACGAAATCATTAACAAATGGAAATGACAACAAATGTATGTTAATAGAGAACCTGCT CTGAGGGAGGGCTCAACGCTTTGGAGATCAACACTCTGCAGCTGCCCAAACCTGCCACACAAATCAATCCAAATTAAAAG TTTTGGTCACAGCAGAGAACACATTCATCCCAAAAACAAATAAACCACAACAACCTCCAGTTAAAGAAACAAAACCATAC ACCAAATAATATCAATAGAAAAAGCAAATTTCCACTCACCACTCTATCACCTGTTGAATTTTGGGAGCAAATTCATCAAC CTGCAATTTGAAAAATTACTACTATTTGAAAATTCAAAAGGGATATTGATTATAGCTGAAAAAAACAATGAATTGAAGGA AAAGAATGAAAAACCTGATGAGGGGTAAGAGAGATTTGAGCTTTTTTTGCCAAACTAGTCAAATCTGGAGGTTGAGTTGA TGAACAAATGGTGGTTGATGAGAAGCTCCGAAACTTGTTGTGAAGGCCAACACTTGATACCTTTGCAAATGAATGTGATA ATGATGAAGCTCCCTTACTACTGAGCAATATCAACCCTTTGCTGCTACCCATTTTTCTCTGCAATTTTTCTCCCAAATCC TTATCCCTAAACCTCAAAATCTCCGAACTGAACGTTCCTGGTTTATCTGGTGAAAGTTTTGATGTTTTTCAATTTAGTCC TTGAAGAAAGTTTAAATTGCCGCATTAGCCCTTCTATAAATACACAAATTGTCTTTGTTTTTCTCAATTTTGCAAAAGCA CGCACGATCGAACGAGAGAGAGCTTCATCATGTCGCGACCCAGATCGAAAAGAGCTGAACTTCCACCTGCTCAAGAGGTA CCCACAATCTGCAACCCTTCAAAATTTCATTTTTCAATTGCAAACAGAAAAAGATGAGTTTTTTATTCTTTTTTCAATGA AAAACTATATGGGTATTTTTGTTTTCCCTATTTGGGGGTTTCGTATCATCAAACATTGCATTGGATGAACATGAAGATAT TAATTTTGAATTATGAATTAAGTTTTTTTTTTCTTATCTGCAATTTTAAAGTGTAATTTTTTATGTCTTTTATTATGAAT GAATATGTGGTGTTTCTTGTGCTGTGAAATGCAGAATATTGAAAAATTGGAGAAGGTTGTAAGCGAGGGAAATTATTATG GGGCTCAACAAATGTACAAGTCTATTAGTGCCAGGTTTGAACAGTTCTCTAGCTGCTGTGTATTACCAAATTATGATTGC TATTTGCTTAAGAGAATATCTGCAATATGTTCTTCATTATGCTGTTTTAAATCATAAGTAATTAGTTTTTCTATATTTAT ATTTTTTCCGTCTCTGTGCATGATTTATTAGATGAACTCACTTAGTATACTATAAAGTAACTGAATGTGAGGGTAGCATA TTAGTGAAATAGCAACGAATAGTTCATTATTTGCAGCCCCCGAGAAGGACAATTTTAGCATCAATGTGAAAGGATTTTGT TTGGAGAATAGAGAATTAGAGATGCTATGAATTAGATATCTTTTCTATTCTTTTTGGAGCTGGATAATGTTTGACTTTTG CTATTTTTGGTGAATGCTGAGTTTGTCCAGAGTTAAGACTTTAGAGCAGTTTTCTTATATGCTGGTTTAGAACTTCGGGA GGAGTATAGATGGCAAGGTTCTTCGCCAGTGTACAATAACATATGTTGTTATTTGATGTTTTCGTTTCACTCTTATCTCC CTTGTGGTGTAATGTGATCTCTAAGTCATTCAAGGTCTATGCATTGCTTTGCTACTGGCTATTTTAAAGGGGATTCTTTG TCAAGAGATTGGCAAGCTTTGCTTACTTAATGTGTTTTTCTTATTTTTATTCTAGATTTTTTCTTTGTATTTTCTGGTTT CTTTGAGGATATATCTTACCCCTGCTTGTGAACGTCTCCCTTTTTGCTTCTTTATTTAAATTTATTTATCTTTAAAATGC ACTTTCCTTTATTCATCCATAGACTTATGCTTGTTGAGGCCCTACAAGAAAAAATGCTGCTAAGCATCATTATTTTGGCT AACAACTGCATTACATTAACTAATAAATACTCATCAGTTGAGTTGTAGACATTGATGTGCCACACACGCTTTGCTGCAGA TATGTATCTGCTCAGAGGTACTCTGAAGCACTGGATATTCTACATTCTGGAGCATGCATTCAATTGGCTAATGGGCAGGT TCTACATTTCTGTTTCAAACTCTCAATGCCTTTCAAAATATACTTTAATTATGTTGATGATCATTTTTCGGGTGTAAAGG AGAAATTATTAGATAATTCTTTAAGAGAGAAAGAAAATGCACAGATATAAGGAATCCTGTCATAAAAAATTATGATAAAT ATATATGATAATTGTTTTAACAGTTCGCAAAGAGCAAAATTTAACTCTTATTTCTCTTAATTTAAGGTTACCTGCGGAGC AGAGCTTGCTTTATTGTTTGTCGAAACATTAGGGAAAGGGAAAATTCAGTATGAAGATGAAAATCTTGGTGAGTTCTTAT CCTGTCTTTTACAGTTTTATATTAATGACCAGATTATTTTTTGTGATTGTGCCCTGTGATACAATGTGAATTATTTGTCA CTCCTCCCTTGGTCAGTTTAGATCACTTGCCTTTATTATATCCTGTTTTTACTTGATTGCACGGGGAATTTTAATTTGGT ACTTATCATGTATTTTCTTAAACATCCATTCTTCATATTTAGATTGATACTGTATTTATAGATTCAAAATTTCTTCTTAT TTTAGATCGTCTCAAGAAAATCTATGAAGCATTTCCTCGGGTTCCCTTGCCACAACACCTGTGGGATGTTGATGACATGC AGCAGCTTTCTGAAAATATTGGAAGTGCAAAGATACGTGTTGAGGGATGTTCCTCGTTCTTAAAAGCTGCCCTTCGGTGA GTGTTAATAGAATTTATTAATATTATAGATTGTAGTTTGTATTTACCATTCCGTCTTTCTTTTCAATATGTGCTACATAC AGTGTTCAGTTTACAAAAACATATCAATTCATTTAATATTTCTTTGGCTATAGAACGACAAAAAAATTCTTATTATCTTT CATGGAGCATCTGCTCTACCATATAAGCATCATGCATATTGAAATTTCTATTTAGTCTTTATCGCCGCTGAACATAAAGA AATTTCTACTTTGTCTTTGTGACTTTTAGTTGGAATTACAAGTGATAATAGAATAATAGAGGAGAGTTTGTAGGATCCTA TTTGAGCATAATAGGGGAAGTGAGCTTGTGGAAGGCAGAGTGTTAAATTGTGGGGGGGGGGGGGGGGTGTAAATATGTGT GGGAAATCAGAGTTAAGTCAGAAAGGAGGTATAAATTATGTAAGTACAGGGTGTGAGGGAAGATGACTCGTGCTGCCCAC CTATGCAGTTGTCTATTTTGTTAGTTGCTATCTCCCTGACTTCTGTTTTGAATCTTTTGGAACCTTTACATTACAAGTCT ATTTAAATGAATATATATCAGCATATTTATTTATCCTAGTTTACATTATAATCATGTATTGCTTGAACAATGTTTCTGCC TTTGCTGCTGTTGCATTCAGATGGTCTGCCGAATGTGGAGCAGATAAAAATGGTTCTCCAGAACTGCACATTATGCTAGC TGAATACATATTTTCTGAAAGTCCGGAGGTGGTATGTTTCACAATGGCCCTTCTAATAAATCTTCATTGTTGTTTCTCTT GAGTCTACATTCTGTATAATGTGTACGCTAGAGTTTGTTTCTAGTTTGTTTTTTAACAAACATCTGTATGAATTTTTCTT AGCAGTAAAACACTACTTTAGATATGTAAAAGTCTTATGTGTTTCTCATTAAATAAATTAAAATTAATGAAGTTGGGTAA ATTTAGGGTTTTCTAGTGTGGAATTGTGTTAGTAATAGGTAGATTACAGATTTATTGAGTGCAGTGTGTAGATAAGGGGG GTTTTCTGAAGGAGGACAAGAGTTCTCTTTTAATCTTCTTTCTAATTTTTTTTTGAAGCTAACTCAGTGTACGTATAACA GTGACAGTGAAGCAAAGCAAACATAAATGAAGTTTAGTGCACTCTAAGTGAAATAGCTCATGAGAAATCTAGTATACTGT TGCGCTGATTGTTTGGAGCAGTCATGTCTCTGTATTTTCGTGCTGATATCGAAATGGCTTTATGCTATGAAAAGCTTCAT TTACCCTTGAAACTATTTGATCTTTAATTGTGATAGATGAATATCTATATGCTTTTCACATGCAGGACATGAATAAAGTG ACATATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACGCTTGTGAATTTTTTGGGCAAGGTCAGCCTCCT AACTTCTTCATTCCTTGTTACTTGGTTCAACTTTACTAGATTCTGTTGAGCCATACCAAACAATTTTGATCTTTCTTTTT ATGCTAAAACTTGGTTTATCATCTATGAATATTTTATTTATCCTATGATTCACATGTTATATTTCTCAATCTAAATTAAG GAGGTAGTTGTGACATTCATTATGTATCTTTGGCATACTTTTGGGATGCTTCAACTGATATGTTTTTCAAATTTTGTAGT GTTATCCCGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTAAAACCATTAAAACATTTGTGAAGATAATTTT CAATTTGAAATTTCAGGGGAATGTCTACCACTCCATAGTAAATTTGAGTTCTCATTCTTGAATCTCACGAAGTCAAATCG GTCCTTCTTTCTTTTGTTGCTTTTAAAATTCCTTGCTTTCTTTTGTTGTTGTCTTTTACCTGTAATTCCATTTCCATGCA TATTTCAATTATGGTTTAAAACTGAGGAATTGGTCATTTCTTGCATGATAGGTATTTAACTTTAGGTAATTTGAAAGATG CAAATGTGCTAATGGAGGAGATAAAGAAGCAAATTGAATCTACTAAGGTTGAGCTTCCTCAAACGGACTTGATGCAGTTC ATCGTTTATCTTTTGCAAACGTAAGTTGTCTATAAATTCTATCAATAAATTGATCAATTGTGTTCTAACTTCTTATCAAT GGTAAAGGGACATTTTGCCTTACTTCTATTTTTTGTTTTTTGGTCAAACCTTACTTCTATTTGAATGAGACTAGAAAGCA CTATGATTTAAAGAATATTAATTGTTTGCTCATGTATTTCATTTATAACATGATCCAAGAACTTTATTTAAAGTGTGTTA TACTGTTATCCATTGTATGGAACAAATTACCAGTTATTAGTTCTCAGTTCTCACTTGACATGATTGAAGCAAAATGCATT ATGTAACAGATGTAATTGTATGAAACATTTTTACTGGGAGTACTTGGTTGATACGAGACGTGTTTAATAGGAGATTTTTT TTTTCTTTGATGCAGGATGGAGAGAGATGCTTTTCCTCTCTTCAATATGTTGAGAGGAAACTATAAGTCATGTATTGAGA GGGAACCTGCCTTCAATGAGGTCAGCTAACTTACCTACCAAGTCATATGTTGTTAGCAAATATGTGGTGTTCTTATGATT AATTTTATCTCGCATGAATCTAAAAAATCCTACCGATGTGCTGTTTTTGACATGAAAAACCATGACTTAGATGCTAGACG ATATCGCGGAGAAGTTTTTTGGAGTACAACGAAGGAACCCCATGGGGATGTTTGGAGATATATTCAAGGTTACTACTGAT ACATTTCAATAGTTTAACATTAACCATCTTGGCACTGGAAAAATCACATACTTTTTAATATGAAGAAAACTCATAATTAA TTAAGAAGTTCCATGCTGATTTCTTATTTTGCAGATGATGGGGGCTGAATAATGACATTCATGATCAAGAGCTGCTGATA GCACAGCAATTTCTACAGAAGATTCAAAGCAATTTATACCATTTTTAACTATGTCAGTGAATAAAACTTTCATGTAATCT CTTGATTAGGTGTATTTTGATGAACATGTTGTGATTTGTAAATTTTAGCTGCACAATTTTTTGGCAAAGCAGCAGTTTCA ATATTTTTCGCTGTAAAAACATGCCAGCAAAGTTGATCGGTTCTTATCTTGTTTCCTGGCAGAATAGAGTTTGGAATGAT TTGTTAAACATTAATTTTGTTTCCCAGTAATATTGTTAGTAAATGCAAGGTGTAGCCATATGAATCATGAATGTTAAAGC TCAAGTGTGTTTACGTTTTTTTTTATTTGGGTCGGTAAGTGTTTACACTTAAATATGTGAACATGGATAGAGGACATACA AATGC
CDS sequence (LotjaGi5g1v0278200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCGACCCAGATCGAAAAGAGCTGAACTTCCACCTGCTCAAGAGAATATTGAAAAATTGGAGAAGGTTGTAAGCGA GGGAAATTATTATGGGGCTCAACAAATGTACAAGTCTATTAGTGCCAGATATGTATCTGCTCAGAGGTACTCTGAAGCAC TGGATATTCTACATTCTGGAGCATGCATTCAATTGGCTAATGGGCAGGTTACCTGCGGAGCAGAGCTTGCTTTATTGTTT GTCGAAACATTAGGGAAAGGGAAAATTCAGTATGAAGATGAAAATCTTGATCGTCTCAAGAAAATCTATGAAGCATTTCC TCGGGTTCCCTTGCCACAACACCTGTGGGATGTTGATGACATGCAGCAGCTTTCTGAAAATATTGGAAGTGCAAAGATAC GTGTTGAGGGATGTTCCTCGTTCTTAAAAGCTGCCCTTCGATGGTCTGCCGAATGTGGAGCAGATAAAAATGGTTCTCCA GAACTGCACATTATGCTAGCTGAATACATATTTTCTGAAAGTCCGGAGGTGGACATGAATAAAGTGACATATCATTTTGT GAGAGGAAATAATCCAAAGAAGTTTGCTTCTACGCTTGTGAATTTTTTGGGCAAGTGTTATCCCGGTGAAGATGATTTGG CCATTGCTCGGGCAGTTTTAAGGTATTTAACTTTAGGTAATTTGAAAGATGCAAATGTGCTAATGGAGGAGATAAAGAAG CAAATTGAATCTACTAAGGTTGAGCTTCCTCAAACGGACTTGATGCAGTTCATCGTTTATCTTTTGCAAACGATGGAGAG AGATGCTTTTCCTCTCTTCAATATGTTGAGAGGAAACTATAAGTCATGTATTGAGAGGGAACCTGCCTTCAATGAGATGC TAGACGATATCGCGGAGAAGTTTTTTGGAGTACAACGAAGGAACCCCATGGGGATGTTTGGAGATATATTCAAGATGATG GGGGCTGAATAA
Protein sequence (LotjaGi5g1v0278200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPRSKRAELPPAQENIEKLEKVVSEGNYYGAQQMYKSISARYVSAQRYSEALDILHSGACIQLANGQVTCGAELALLF VETLGKGKIQYEDENLDRLKKIYEAFPRVPLPQHLWDVDDMQQLSENIGSAKIRVEGCSSFLKAALRWSAECGADKNGSP ELHIMLAEYIFSESPEVDMNKVTYHFVRGNNPKKFASTLVNFLGKCYPGEDDLAIARAVLRYLTLGNLKDANVLMEEIKK QIESTKVELPQTDLMQFIVYLLQTMERDAFPLFNMLRGNYKSCIEREPAFNEMLDDIAEKFFGVQRRNPMGMFGDIFKMM GAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 321 | 321 | 9.1E-155 | – | |
| PANTHER | 1 | 321 | 321 | 9.1E-155 | ||
| Gene3D | 12 | 321 | 310 | 5.3E-68 | ||
| Pfam | 48 | 319 | 272 | 8.8E-67 | ||
| Coils | 228 | 248 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein insertion into ER membrane | The process that results in incorporation of a protein into an endoplasmic reticulum (ER) membrane. It depends on specific topogenic sequences of amino acids that ensure that a protein acquires the proper orientation during its insertion into the ER membrane. |
Expression pattern of LotjaGi5g1v0278200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…