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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0280200 |
| Transcript ID | LotjaGi5g1v0280200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L21; TAIR: AT1G35680.1 Ribosomal protein L21; Swiss-Prot: sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic; TrEMBL-Plants: tr|I3SFQ7|I3SFQ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0280200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59535585..59538911) extracted from Lotus japonicus Gifu genome v1.2.
TGATGATGAACAATAAAGAGGATAGAAAGAGATAGGATAACTGGATATGCGTGACACTCTGTGAGAGTGAGAGCTCTCTC CAACACCGAAAATGGCTTCTGCAACTGCAATCGTTTCCACACTCTGCGCTTCTTTCGGAACCCACTGCACCATTTCCTCC ACCTCCAAACCTCTATTCTCTCAATCTTCCACTTCTCGCTTCCCTTCTCATTCCAACAAGCTCTCTTTACAACCACCCAC GTTCACCCAGCGTTTTCCTCTCCTACCCCTCCCCAAGGTCTCAGAATCTGCGGTTGCTGAGCCGGAGATTGATGTAACGA CTCCTCAGCCTGAAGCTGGCGAAATTGTCCCGGCGCAGCCTCCTTCTTGGGAACCGGGTCTCTTCGCTGTGGTCATGGTT AGTACTTAGTTACTCCTTTTTGTTTTTTGTTTTTTGTTTTTGAGTGTGGATTGGGTGACCCATTTGGCTGAATTGTTGAA AAGTTGCAAGGTTTAAGTATACTAATGTAGTTAGTAATGTTCATGATTTTTTCTCAGGGTGACCTGAATGAGTTTTAATT TGAGTGATTGCTTGTGTGTTTGTAGATTTGTGGCTACTCCATATGGTTTTATCTATTGCTGATGTTGACCCTATGACCAT AAACTGTTGTTTGTGCTGTTGTTAAGTAGCTAGCTTTGAGTATTTCCTTGATTAAGATGATTTTAAGGGTGACCCTTATG AGTCTTCTTGGTGATTGAACATGTACTTGCAATTTTTTTGGCTGCCCAAATGATTTTAATTATTGTTTATGTAATTTTGG TTTGTTGGATAGGCAAATGGGTACTTGTTTTTCCCCATTCTGGGGTTTGTGCAAATTTTATCTTCTGTTCTTGTGCTTTT GAACATTTTTTTTTTCTGTTTAGGTTGGCGGGCGCCAATATATTGTTCACCCCGGGCGCTGGATTGTTGTTCAGAGGCTG AAAGGTGCTAAGGCTAACGACAAGGTTTGCATATTTTTCTTAATTTCTCCCATTGGACACATTGCCGTTCATGCTTATTT CAGTCTTTCTGCCATAGTTATGCATCATTCCTTTCATTCATTCAATAACTTTTTCTGTATTAGTTTATGATCATCACCAA CTTACTATCACCGCTTTCTCCCAAACATTGCTGCTAAAATTACAGTATGGTATTTTATTATTCGGTAATTTGTTGTCACA AGAAAATGTATCTGTAACAATTATATGTTAATTCATTATATCAAACTTCGGGTTCTCCCATACGACTCAATACAGAATGT TTTTGGGGTGGAGTGTGAAGTTTAGTGACTAATGATTTTAAAAATATGATCCACTTTCAGAAATGAGTTCTCTGTGCTCC CTTCTCGTTTTCATAAGATTTATTATCATGAAAATCTACCTGATCCTTATTAGTGACCTAAACTATGGGTTAGGATCTGT AATTTTAAGGGGTCCAACACAAAAAGTTATTTTTAAGAAATTTGGCCTAAAGATGGGGAGATGAACTTAAATACTACCAG TTAGTGGTGACGCCTGATAAAGTGATCACATTTTATGAATATTCTCCATAACTTCCAAAGCTTTCAATTTATTGGTTAAT TAGATTTAGCTCTTTCGGATCTGCAGATTGCCCTACAGAAGGTTTTACTGGTTGGCACAGATACATCTTGCTACATTGGG AAACCAATAGTATCAAATGCTGTGGTATATGCTACGGTGGAAGAACAGGTACACCTCTTTCTTGTTTCTCTTCCTGCAAG AAGCTTTTTTTAAGACATCGTCTACCTTAACTGATATGTTTCTAATGCAGGGTTTTGACCCCAAAGTAATTGTCTTCAAA TATAAACGAAAGAAGCAATATCGCAGAACTTATGGGCACAAACAGGTACTAAAGTTGTTTTGTTTTACTTATGCAACCAA ATTATTTATCAAAATGTTTTTATCGCAATCAGTATGTCACTTTATATGGCTTGGGAGTGGTTGGGAATTTATTGAAAGGA GCTTCAAACTAGTGAATCCATATTGTGTGTGTATTGTGTGTGCCTTTGGATAAATGTGTTCTTGGCCAAAATGTCATCAG TCATTTCCTTTCCTTTTCTAGTTATTGCTGGTGAATTTGAACATAACCAGGGATGAAAACAATAAATACCAGTATTGCCT TATGTGGTTATGCTCATTGCATCCGTCGAGCTTCTGTCTCATCCTGATGTTAATTTCTCATCTTTTGTTAACCATGGTTT TGCATCACCATGAAAGAGTTAGGAAAGGCAAATCTCTATCATTAATTCCATTTTGCTGTTGTCCATAGTTTTATTTTCAA GAGAGAAATTAAGCTAAATGCAAATGAGCTTATCCCTCTTGTGGACTGTCCAAGCTTTCAAGGAATGCAGAAGCAAAATA ATAAAATTTGCTTATCTTCATATTTATTTCTTGTCATTTGAAGCATCTTTGGCTGAAATCAGAAATGCAGTCATACTCAC TTCACCCTGCTTTTTAAGGTGGCTACAATCACATCTAGGATGGTTTTACCGATTATACTGACTGATGCAACATATTACTT GGCAAATAATGTTATGCAAATTAAGTCATGCAATGATTTATCCGAATCTGATATAAAAATTCAAGCAATGTCTCACCAAA TAAACCTTATTAGAGATTTGTGTTTAATGTTTGGCTTATTTCTTGAATCGTTTGAAATTTTGTCCTTATGTTCGAGTGCT GACATTGTTTATGATGTTTGATTTGGTTTTCAACTTGTGACAGCCACATACACGTTTACGGATAAACAGCATTATGGGCT ATGAGAACTATCCTAAAGTTACGATGGATGATGTCAAGTCAGAAGAATGAACATCTAAGTGCCAATATTGTATCTTCTTC CATCTTTTATTATAAGCAATCGTTTTGCCTTTTTGCTTTGATGAGGAATGTAGTGGCTTAAATTTTAATCAAGCTAATGT ATGACTTAGTACTCTGTTTCCTAATACATTGCTATTTTTCCTGTCTGAAGAGCTTGTTAGTTCGGAGTTGTTACATTTTC ATTTCTCTTTATCTTCCATGAAAATATTAGTCCCTATAATCTAAATGGAGCAGGAGATGTCCCTTTAAAGTGAGTTTATC TGTGTAGTGTTAAAGTAATTATGCTTTTTTTATAATTTTATTTAAAATCGATTATAATTTGAGTCACTAATTTAAAATCC CTTCCATGGAAAGATGCATGGTCATCAGTCATGCATATATTTTTAGAACGAGAAAGATCTTGATGACCATTTATAAGGAC ATTTCTGAATTGCAATAGGTTCAAAAGTCAAATTACAAGCACTTCTG
CDS sequence (LotjaGi5g1v0280200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTGCAACTGCAATCGTTTCCACACTCTGCGCTTCTTTCGGAACCCACTGCACCATTTCCTCCACCTCCAAACC TCTATTCTCTCAATCTTCCACTTCTCGCTTCCCTTCTCATTCCAACAAGCTCTCTTTACAACCACCCACGTTCACCCAGC GTTTTCCTCTCCTACCCCTCCCCAAGGTCTCAGAATCTGCGGTTGCTGAGCCGGAGATTGATGTAACGACTCCTCAGCCT GAAGCTGGCGAAATTGTCCCGGCGCAGCCTCCTTCTTGGGAACCGGGTCTCTTCGCTGTGGTCATGGTTGGCGGGCGCCA ATATATTGTTCACCCCGGGCGCTGGATTGTTGTTCAGAGGCTGAAAGGTGCTAAGGCTAACGACAAGATTGCCCTACAGA AGGTTTTACTGGTTGGCACAGATACATCTTGCTACATTGGGAAACCAATAGTATCAAATGCTGTGGTATATGCTACGGTG GAAGAACAGGGTTTTGACCCCAAAGTAATTGTCTTCAAATATAAACGAAAGAAGCAATATCGCAGAACTTATGGGCACAA ACAGCCACATACACGTTTACGGATAAACAGCATTATGGGCTATGAGAACTATCCTAAAGTTACGATGGATGATGTCAAGT CAGAAGAATGA
Protein sequence (LotjaGi5g1v0280200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASATAIVSTLCASFGTHCTISSTSKPLFSQSSTSRFPSHSNKLSLQPPTFTQRFPLLPLPKVSESAVAEPEIDVTTPQP EAGEIVPAQPPSWEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVVYATV EEQGFDPKVIVFKYKRKKQYRRTYGHKQPHTRLRINSIMGYENYPKVTMDDVKSEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 8 | 211 | 204 | 5.7E-74 | ||
| PANTHER | 8 | 211 | 204 | 5.7E-74 | – | |
| Phobius | 16 | 19 | 4 | - | – | |
| Phobius | 20 | 216 | 197 | - | – | |
| Hamap | 97 | 200 | 104 | 23.146 | ||
| SUPERFAMILY | 97 | 198 | 102 | 6.41E-33 | ||
| TIGRFAM | 98 | 198 | 101 | 9.9E-28 | ||
| Pfam | 98 | 198 | 101 | 4.2E-33 | ||
| ProSitePatterns | 169 | 191 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0280200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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