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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0284600 |
| Transcript ID | LotjaGi5g1v0284600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT1G34190.1 NAC domain containing protein 17; Swiss-Prot: sp|Q9XIC5|NAC17_ARATH NAC domain-containing protein 17; TrEMBL-Plants: tr|I1LDA8|I1LDA8_SOYBN NAC transcription factor; Found in the gene: LotjaGi5g1v0284600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60121549..60125985) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAATCAATCACCTACACCCAAACTCACATAAAACCCATAAACCCTAACCCTAATCACCCTCCATCACTCTTTCATCA CATTTCAAGCCCACGCAATCCAATCCTGACAGAGAACTCACACTATCACTCAAACACTTGAAACCACTCAACAATCTTCC CTCCGAAGTTTCCCAACCTTTTCTAGCTTCCTTCTTTGACCAAACCACAAACCCTCACACACATTTGAATCTCTCTCTCT CTCTCTCTCTCTCTCTCTCAGTTTCGATTCTTCGTTCCACAACTCCCTCGAGGTTCCAATCGTAGCATGTAGTTGTGGGT TTTCGATTTCCATACTTCTTGATTCGGAAAGTGGGTTTCTTTTTTTGTTTCGGGGTGTGGAATTTGATTTCTCTGATTAG GGTTTTTTCCTATTCTGCCCAATTCGAATACCTGAAGGCTCGAATCGTTGCATACGGTTGGGGGTTTTTGGTTTTGATTA GAAAAGTTTCGGATTTTAGTGTTGATCGATAATGGGTGTGGATTCGGAAGCGCTTTCTGCTGACTGTTTCAGCCAGGTGA TGTCGTCGATGCCCGGTTTTCGCTTTCATCCCACGGATGAGGAGTTGATCATGTACTATCTCAAGCGGAAGATTTGCGGG AAGAAGCTCAAGTTCCATGCGATTCGTGAAATTGATGTTTACAAGTGGGATCCTGAGGATTTGCCTGGTATTTGATCATC CCTTTTATCTTTTGTTGTTGTTGGTTTTTATGGCGTTGACTCGGGGCTTTTTGTTGTTTGTGTTCCTTTGATTTTATGCT TTAGTTTGGTCAGTTACAAGTTGTTGATTTTGGTATGAACGTTTAGATATTTTTTGTGTTCTAAATACTAGTTAGAATTA GAATACCATTCGGTTCAAGTTATGATTGATGCTTATTTTAGATGAGTGATACCTTGAATGTGTTTTTCAGGCAAGAGTTG ACCTGGGGTTGCTTCAATAAGGTTTTTTTTTTGTGTTATTTGGGTTATTTTGATTTGTCGATCTAAGCGACTTGAGTTAT GATTAATTTGTATTTGATGGGTGGTTTTGTTTGCTGTCCTGTTACTCTGTTAGGGTGTTTGACTGTTTCCCCTTCTCTCA CTTTCCCTTTGTGGTGGGTTTCATTGACACTGTTTTATCTAGTATCTACTTTGTGAATCTGTTGTGATCTATTGGTTGAT ATGGTGCATGGAAAGTGTTAATGTTGTCAGTGCTTGGTAGATCCATAGAATGAGGTGTTTGAGAAATCCGCTTGATACAA TGATCTGTTTGTATATATGATTTTATTTTATTGTCTCATTTTGAATGAATTATGGGAGTTGTGATTTTTGGGAGTTTTAA AGTTGTAGCTGTTTGTATGCAAATTAATTATACTGATAGGATATATTATTGGTGCATTGCTACCTGCTTTTAATCCCAAT ATTTAATTACTTTGATTATTAAAGACTGATTACCTCAAATTTCATCTTGTTTGATTTCTGATTGATTGTAATGTGTTGCA GGGCAATCCTTACTAAAAACTGGAGATAAGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCAAG GTCTAACCGAGCAACAACACACGGATACTGGAAAGCAACAGGAAAGGATCGTAATGTGATGTGCAATTCTCGGTCAGTTG GAGTAAAAAAGACACTGGTTTTCTATTTAGGCAGAGCTCCTAGTGGTGAGAGGACTGATTGGGTTATGCATGAATACACC TTAGATGAAGAGGAGCTCAAGAGATGCCAGGGTGTAAAGGTAACATGTCGAATTGACCATTTTGCTTTACATATTTTTAT TTAGCTACTCATTTTTATTACGCTAAGAGTATTTATTTATTTACTTACTGACTTTTCGGTTTTCTTGTGAATTCATCATC AGGACTATTATGCACTCTACAAGGTTTTCAAGAAAAGTGGAGCTGGTCCTAAAAATGGTGAACAATATGGTGCACCATTT AAAGAAGAAGAGTGGGCAGATGATGAACCTGTAGATTTTAATGTTGTTGCAGCTGTCCAGGTTGCTCCAAATAATGTCAC TGACACTGTTAGTGATCTGATGCAGCCTTTGTGTGATGATGAAATTGATGAGATCATTAGAGGAATTTTGGATGATGAGC TGGTCCCTGATCAGAAACATGTGAATGGTCTTAACTTTACTCAGGTTTGTGATCGCTGCTTACAATCATTTGCTCATTCC TAATTTAAACATTATTTTCGTCTGATTTTTTTCTCATAAATCATATAGGTTGTTGCTGAAGAAACACAAAGTACAGTTGC GTTTCAATTCTCTGAGGCTGTGATGTTCCCTGAGCCAAGTGAAAACCTTCACTCTAGTAGTCAGCATTATGATGTACAGC CCAGCTTTGACTTCAATCAGTCAGTTACTTCCCACTTGCATGTTTCTGAAGCACCTGAGATCACTTCTGCTCCCAACATT CAAAGAGAGGATGAACTTCTCTTTCAGGAGAATGACTTCTTGGAAATCAATGATCTAGCTGATACTGAACCTACATTGGC AAATATGGAAAATCATGTTGAGAACCTGCAGTTTGAAGATGGGTTAAGTGAACTTGATCTCTTTCAAGATGCAGAGATGT TTCTTCGTGACTTGGGGCCAATTACTCATGATACTGTTTCACATTCATATATGAATACTGTTGACAGCAATATCGATAGT CAAAATTACCAGTTGTTGACCAATCAAGCTGTTGATGAACTCTGGATGCATGATGTGAGAAACATCCTGAGCTCAGAAGA AGGCTATGATGCTGGTTCAAACTCTCTACCAACCCCAGGTATAGTCATCAGCACAAGACACAGTGCTGCTAAACTGCCAA ATAATGTTTTTGCTTTCTCTGAGATGGATCGAGATGGAAGATTCCCATCTCATTTGGGCTGAGCTCTTCGCACTTTACTG CTCCTGACTGGCATGCCAGCTTATGCGGGGGCAGAAACCTTTCCAGAATATAAATATTGTTCCATTTAGAGCTTCACAAA TTAAAACCTAGATTTTTTTTACTATATATTCCCGTAGGGAAAATGACATTTGAGCCCAGTTTGAAGTGGCTCTTGTGTAA AAAATGCCATAGGTTATCCCTAATATATGCTAGTTTCTGGTCATGTATAGGTGTCGTATGTGAATCTGTCAACTATCCTC CTGAAGGCAATGAAAATCAAAGCAGCAGCACTGTGGAGGATATTCCTATGACTCCAAGTAGATTCTCCTCTGCTCTTTGG GCTTTTGTGGAGTCAATACCTACTACACCTGCATCAGCTGCTGAAAACGCTCTGGTAAACCGCGCTTTGAATCGAATGTC TAGCTTCAGCAGGGTGAGGATCAAGAACACCAGCATTGCTGCAGGTAAAGACACTGCTACTAAGAAGAGAGCGGGCATGA GGGGAATTTCATTCCTTTTCTTCCCAATTATTGTTGCTTTATGTGCTTTCTTGTGGGTTTCTCTTGGAAATTTAAGAGTA TTAGGGAGATGCATCTCTCCTTGAATTCTATGTAAGTCCAAAGTTTTGGTGCTATATATAATTAGTTTGGAATCTCCCCA GAATGACTGAGAATAGTACTTCTAACATATTCTGAAAATAAAATTATTTTGATTCCTTGTGAATATTGAACTTTAGGGTA GCCAAAGTCCATCAGCCTAAGAATTTGCAGAGTAATGGTAATCAAAATCTCTCCAAGTTTTGAACTTGTCTTATATTTTT CATTGTTTATTTAATATCTTGATTTGATTAACTTGTAGAGCACTCCATTGTAGAGATCGATTGTACAATATTATACCACA TCTTGTGGATTGTGTAAATAGATGTATATATATAAGCTATATGTGTAATCATCTTTTAATGGTAGTAATGCCTTCAGTAT TAGCATTTCATTTTTATTGTTAGTACTTGTTGATAAATAGATATGTTGTGTCCTGAATCACTGATCTGTGTAAGCAACGA GTGAAATACATACTCTCTTGTCGTGGATATGATGAGCATGCCCAGAATGCCATAGAGGATGGTTTGAAGTGCATGATAGA AAATTTCGGTGAGACCAAAGTTATGGTGGATAGTCGCAAAATCTAAGGAAAGTTACTTCTGTCCACCATAATTTTGGTTC CACACACAAAGGTGATCAAGCACAAGAACAAAGCTATAGTTCGTATGTTGTATTTGGAGACTCTTTTAAATTAGCTGTTT CTCGGTCTTGTGGTGGTTGTTGACTGAGATGATGAGGGCATCAAATAGATTTATAAGTTTTAAAAACTATTCCTTCTAGG AGAAGTATTCTTTTATATTGATATTTAATAGGATAAAATTGTACAACCTTCACTCTTATTTATAAGAATCAAATGAGATG TTTACTTTCTTTATTTTAATAAGAACCAACTTAAAAT
CDS sequence (LotjaGi5g1v0284600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGATTCGGAAGCGCTTTCTGCTGACTGTTTCAGCCAGGTGATGTCGTCGATGCCCGGTTTTCGCTTTCATCC CACGGATGAGGAGTTGATCATGTACTATCTCAAGCGGAAGATTTGCGGGAAGAAGCTCAAGTTCCATGCGATTCGTGAAA TTGATGTTTACAAGTGGGATCCTGAGGATTTGCCTGGGCAATCCTTACTAAAAACTGGAGATAAGCAATGGTTCTTTTTC TGTCATAGAGATAGGAAGTATCCTAATGGTGCAAGGTCTAACCGAGCAACAACACACGGATACTGGAAAGCAACAGGAAA GGATCGTAATGTGATGTGCAATTCTCGGTCAGTTGGAGTAAAAAAGACACTGGTTTTCTATTTAGGCAGAGCTCCTAGTG GTGAGAGGACTGATTGGGTTATGCATGAATACACCTTAGATGAAGAGGAGCTCAAGAGATGCCAGGGTGTAAAGGACTAT TATGCACTCTACAAGGTTTTCAAGAAAAGTGGAGCTGGTCCTAAAAATGGTGAACAATATGGTGCACCATTTAAAGAAGA AGAGTGGGCAGATGATGAACCTGTAGATTTTAATGTTGTTGCAGCTGTCCAGGTTGCTCCAAATAATGTCACTGACACTG TTAGTGATCTGATGCAGCCTTTGTGTGATGATGAAATTGATGAGATCATTAGAGGAATTTTGGATGATGAGCTGGTCCCT GATCAGAAACATGTGAATGGTCTTAACTTTACTCAGGTTGTTGCTGAAGAAACACAAAGTACAGTTGCGTTTCAATTCTC TGAGGCTGTGATGTTCCCTGAGCCAAGTGAAAACCTTCACTCTAGTAGTCAGCATTATGATGTACAGCCCAGCTTTGACT TCAATCAGTCAGTTACTTCCCACTTGCATGTTTCTGAAGCACCTGAGATCACTTCTGCTCCCAACATTCAAAGAGAGGAT GAACTTCTCTTTCAGGAGAATGACTTCTTGGAAATCAATGATCTAGCTGATACTGAACCTACATTGGCAAATATGGAAAA TCATGTTGAGAACCTGCAGTTTGAAGATGGGTTAAGTGAACTTGATCTCTTTCAAGATGCAGAGATGTTTCTTCGTGACT TGGGGCCAATTACTCATGATACTGTTTCACATTCATATATGAATACTGTTGACAGCAATATCGATAGTCAAAATTACCAG TTGTTGACCAATCAAGCTGTTGATGAACTCTGGATGCATGATGTGAGAAACATCCTGAGCTCAGAAGAAGGCTATGATGC TGGTTCAAACTCTCTACCAACCCCAGGTGTCGTATGTGAATCTGTCAACTATCCTCCTGAAGGCAATGAAAATCAAAGCA GCAGCACTGTGGAGGATATTCCTATGACTCCAAGTAGATTCTCCTCTGCTCTTTGGGCTTTTGTGGAGTCAATACCTACT ACACCTGCATCAGCTGCTGAAAACGCTCTGGTAAACCGCGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAGGATCAA GAACACCAGCATTGCTGCAGGTAAAGACACTGCTACTAAGAAGAGAGCGGGCATGAGGGGAATTTCATTCCTTTTCTTCC CAATTATTGTTGCTTTATGTGCTTTCTTGTGGGTTTCTCTTGGAAATTTAAGAGTATTAGGGAGATGCATCTCTCCTTGA
Protein sequence (LotjaGi5g1v0284600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVDSEALSADCFSQVMSSMPGFRFHPTDEELIMYYLKRKICGKKLKFHAIREIDVYKWDPEDLPGQSLLKTGDKQWFFF CHRDRKYPNGARSNRATTHGYWKATGKDRNVMCNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTLDEEELKRCQGVKDY YALYKVFKKSGAGPKNGEQYGAPFKEEEWADDEPVDFNVVAAVQVAPNNVTDTVSDLMQPLCDDEIDEIIRGILDDELVP DQKHVNGLNFTQVVAEETQSTVAFQFSEAVMFPEPSENLHSSSQHYDVQPSFDFNQSVTSHLHVSEAPEITSAPNIQRED ELLFQENDFLEINDLADTEPTLANMENHVENLQFEDGLSELDLFQDAEMFLRDLGPITHDTVSHSYMNTVDSNIDSQNYQ LLTNQAVDELWMHDVRNILSSEEGYDAGSNSLPTPGVVCESVNYPPEGNENQSSSTVEDIPMTPSRFSSALWAFVESIPT TPASAAENALVNRALNRMSSFSRVRIKNTSIAAGKDTATKKRAGMRGISFLFFPIIVALCAFLWVSLGNLRVLGRCISP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 526 | 526 | - | – | |
| SUPERFAMILY | 15 | 169 | 155 | 8.76E-60 | ||
| PANTHER | 18 | 510 | 493 | 2.6E-127 | – | |
| PANTHER | 18 | 510 | 493 | 2.6E-127 | – | |
| ProSiteProfiles | 19 | 169 | 151 | 54.327 | ||
| Pfam | 21 | 146 | 126 | 1.1E-36 | ||
| Gene3D | 28 | 173 | 146 | 2.7E-56 | ||
| Phobius | 527 | 545 | 19 | - | – | |
| TMHMM | 528 | 550 | 23 | - | – | |
| Phobius | 546 | 559 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0284600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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