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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0286100 |
| Transcript ID | LotjaGi5g1v0286100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A151S8K9|A0A151S8K9_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi5g1v0286100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60270824..60275781) extracted from Lotus japonicus Gifu genome v1.2.
TCCACCAACGGTTGGTCTCTTTGACCAACTCTTTCCCCAACTTTGAACAGGAAGAAATGGTAACATGTTCGGTGCTGTCA TTGTTTAAAAACCCATCAACCCGTGCTGAAACCCTTAGCTTCAGGGTGGAGCCCAATTGCCAAATTATAGGTTCATTCAA TGGGCTGCTATGTTTGTATGATTATGATGGAGATTTCAGATTATGCAACCCTTCTACCAGATTGACATCCAAGAAATCGC CTCACTCATTTTGGTCGAGACAGGATATAACTCATTTTGGCTTTGGTTATGATCAAGTTAAGGACAAGTACAAGGTGCTA ATAGCTATCAGGGCTCTTAATATGACCAAAGTTCATACCTTTGGAACTAATTCTTGGACAACGATTCAAAATCCCATATT TTCTGAAAGTGGGGATAAAGAAGGTAAATTCGTGGGAGGTACTATGAACTGGTTGAATAAGAGAACAGGTAGTTATGGTA ATTGGGCGATTGTTTCCTTTCATATGGAGAAAGAGACTTATAGCGAAGTGTTGCTACCTCCTAAACATGATGGTGGCAAC AAGCATGTGCTGGACGTCTTGAGTAATTGTCTTTGTTTTCATTACTTTGACGAAAGTCACTGGGTTCTGTGGTTGATGGA AAAGCAGGAGTCTTGGACTAAATTGATGTTGATTCCTCATAACAGGATTTGTAATTTTAGGCTTTTTTTCCACCCTTTGT GCATTTCAGGAAATGGTGATGTTCTAGCAAAATGTTTAGATCCCCAATTAGTTCTGTATAACGCAAACAAGGGCACATAT AATTATCCTAAACTCAGGGGATGGTTTAGGCCTGATATGCATATTTACCATGAGAGTTTAGTTTCACCATGATGTTATGT TTGTGGAATCTTCCTATCTTTGCTTATATGACTTTTGAAATGGTTTTCTTAGGAACTTTTCATCTAATGACTCAAATATT ATAAAATATATGGGGCCTGAATTGTTTGGGTGAACCCCCTCATATTAAAGTGTGTCCACCACTGGACGGAGTCATACAAT ATATTTCAAAATCGTGCGTCATAGCGCAGACCAACTATATCGAAATTAACTAGTTTTCTCAACATCAAATGTGAAATAGC AACACACAATGGGTGATAAAGATGACATTCTAGTCTTTGAGACAACATAGCATTTGATCTCTCTAGTCATCGATTGTTGC CTCTAACATTGTTATGCGTTAATTGTCTCACTGTGAAAGCCATAGAAATTGATCTGAGGCTTGTCATCACTTCACAAGAG AGTCTAGCATAGCAAAAAAAGCTAGATGTAACTAGTGTGGCTGCTTAATCAAGTACAATAAAAGTTATAAATGTCATGCA AACTATCATTCAACAAGCTACGAGGATAATCTGGATAAATATGAGAATAGGAAGCATAAATTAGGGTCATCCTCAACGAT AAATCTGTAAGAACATGTTGGTTTTTCTCCATTAGTCCCCCAAATCTGATAGGATATACTGAATATGTCTCTAGCAATGG AGATTCCTATTCGGCGTATGGAGCATAAAGCTTTCACCAAGTTTATGGGTGTAGTACAACTAAGATTAATTGCCCTCACA AACTACCTTAGTACATGATATTTTGAAACAGATTCTGGGAAAAAAGGTGGAAGAAGTCTGTCTTAACATGTGATCTTCTC CGAGAATTGCACTATTCATTTTACTAACAAGTAGAAGTTCCACAAGAAGATTCTAAGTTTTAAACAAGTCACAAGTCACT TTAGAAGGATTATGGCTATGACTGTTGAACAATACTTGAATGTTTGTGGGTTAAATTGTGTTCTCAGTTTAACATTCCAT GATGTGTCATCTAATGAGTAATGACAAGGTTCGACATCTCAAAAAGAGACCAATATCCTATATATCAAGTCAGTTTTGAA GGGAGTTTGCAATATTTGTGTACATATTAGGAATCAATTATGAATGGTCATTACAAGATGCATATACTTCATATGGCATA CTTAAAGAAGATGAAAGAGAGAAAATTGAAATACTTGAGAAGTAAAAGGAAAAAAAAATGGTATAGGAGGCTACACATTT AGTTTAGGGTAATTTATGATTAAAAACTTAGAGGGACTAGTGTTGAATTCAAATACCACACAGCAGTTCAACATAAAATT CAAGCAGTATACAACACAAAATCTTGTCATGAGCAATATTGCTCACTGTTGATAATTATTTTCTGATTTATAGAACAGTT TGCTTTCTTCATATCATCAACCTCAAACACATAAAATTAAGCCATACAAAATGTTAGCAATGACCTTCTATCCATACTAA GTCAGTTCAAGTAGCATCCTGCCAACTCAACTGATGTAAGATCCAGGGATTCCTTTGGTCATCAAAGTCTATCTTTTGGC CCAACTTCTCTTTCTTCAGAATCAATCATCTCAATCACACTTTTCTTTCTTTATTGTAAGTTGTAACACTGTGTACCTAA AGCTTACTAATGTAGCAGAGAAATGCTAACGAGTTATGTTGATCAGTGTAGTAGCAGACTACGTAACTTCTGCATATAAC ACCCCTTGTTCACTCCCAATGCTTTGATAATTTTAGTATGCCAATCATCACATTACATCATTTAAGTAGAAACTAACTGA CCAGCTGCATGCCACATTTGAAGACCTTAGACTTGAAGCGAGAAAAATGTTTGCCTATTTACTATATAGTGAGTAAACAA CTACAGCTCTCTGAAAATTGTTCTGAAATCAACATTTAGATAGGACATTATGTTAAGTATTCATATGCTCTATGTTGATT ACTCAACTGACTCTGAGAGAGATGTAAACAAAAGTGAACCATTCCTATTGTCTTCTAAACATCTTAATTAACTAGTTTCT TCACCAGTTTAATCACTACCAGAAAAACACAGTTAGAAAATCTCATTCATTGAAGGCCATATCAAACCAATGCAACAAGT TGTCAATGCTGAACTTAGCATGCCAAAAGAATGACAACAACCCTTTAAATGATCAGCAAAAAAATAAAAACTATAGTAGT CAGTCCTCACAAATCTATGTTTGGATACGCATTAGTACCGGTGCAAACAGATGTTAACGCACTCAGACAAACAAGGAAAT TCTTCTTATGGATTGAAAAGAAAGCACTTGAATTCAACTATTATCCAAACACATAATCATCAAAGATGGCTTTCAATCTA TTTATTTAAAATTACACCAAAATTAAATACCCTAAGAATCCCTGAGCTAAACTCATTGACTAGCATAAGCAACAACCATC AAATAAAGAAAAGTGTCTTACTCTTACTCATCCAATTGTTGAAGCTCAGCTTTCAACTGTTCAATCTTCAAACCCATTGA TCTCTGCAAAGCTGCTCTATCCTTCTCCGGCAACCTCGCCAACAATCGTTCAAACATGCCCACAACCTCATTGACAGCAG CACGAGCACACTCAGCTTCTTCATTGAAATACACAGTCTCTTTGGACTCCAAGGCCATATCTATCTCTTCCCTCGCTTCT ACAAACTTGAGGTTGATGGTGTCCACCTCTTTGTTCTGATCAACCTCGCTCGACCCACCACAGAAACTTCTCAGATTGTG CATAATCGCGAATTTGGATATAGAGTGGAAATTTGAAGCGGGGATGATGTGAGTCGATGATGTGAAGGGAATCAGTGAAG TGGGTATTGGAGATTGGCGAACAGAGTGTCCGATTCTGAAGAATGAGTTGAAGAGTGAAACGTTCGCGCGTCGATTCATT GTGCTCGGTGAAATTCACAGGTGCAATGGAGCTATGGAAGGTGCAGTTGGAAGTTGCAGAGGCGAGAGAGAGAAGAAGAG GCCCTTAAACCTTTAGGTAAAGAGAAAATATAGGTGGAACAAAATGGTAACAAGACTCTCATTTTTTTATTAGTAGAGTG ACTAGAGTCCATTGAAAACATGAAGAGTCGCATTTCCGATTTAGTGGGATTCACATGAGTGATATTTTAGCTCAGTATCG AGTTAATGTTTATTCACACTTCTCGAGAAGAAAAAAAAATCATCAGTTTCACTCTTCCCATTCCATTCCATTCCATCTGA AACACATTTGGGTTTCGAAATTGAAAGCTATAAAAAACCAATTAGCCTCCTCAAAGAATTTGGCATTAAGGCTCTGCTGC ATTCAGGATTGACAAGGGAATTTAGGGCTTCCACAATCTCCATGTCCGCTTGGCAGTGATTAGGATTCGCTCCGTGTCTG TAATCCGGGCTTTCGTCTCCATTCTACCAATTCTTCAGAAGCCGCATTACCTCTGTTTCATTCTGATGTTGTGCATACCT GCCATTCGTTTATGCCCGCCCGCGAAATCCCTTCTTCGGTGAGTATGAAGAAGGTTTAGAATATGTATTTTTGGTTTCGT TTCACAGTTGTAGCTCTTTTTTCGTTTTCCTTATCCCGGCATTGTGATTTTTGGTTTTCCTTGCCATTTTCGTTCCTAAA GGCGCCACTTTTTCATTCGGTATCGCCGATAACATCTCTTGGTTGTGCTGTCTTTCAGTTGTGGCCTCTATTTCCCTTCT TTGGGTGAGAATGATGAAGGCTTAAAATATGTATTTTTTCTGTTTAGTTTCACCTGTGGTAACTCTTTACAATTTCCATA CGCTGCCATTATGTTCCTTAACAGGCATAACTACTATCCTTGATATATGCTTTTGGAATATAATATCGGGGTTTACAATC TGTTTTTGGATGTCTAAGTCATTACTTGATGGAATATTCTTAGTCATTACATGCTTATCAAAAAAAGAAAAATTCTAAGT CATTACATGTTTAGTGAAACAAGAGATGTTGATGAAGATGATGCTAATGCTAATGCTAATGCTAATGCTAACACATCCAC TACATGATGATTTGTTTGCCAGACTCTTGGTTCCTTCATTCAATTCACCTAAAGACACTCTTGCGAGTAAGTTTGGAC
CDS sequence (LotjaGi5g1v0286100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAACATGTTCGGTGCTGTCATTGTTTAAAAACCCATCAACCCGTGCTGAAACCCTTAGCTTCAGGGTGGAGCCCAA TTGCCAAATTATAGGTTCATTCAATGGGCTGCTATGTTTGTATGATTATGATGGAGATTTCAGATTATGCAACCCTTCTA CCAGATTGACATCCAAGAAATCGCCTCACTCATTTTGGTCGAGACAGGATATAACTCATTTTGGCTTTGGTTATGATCAA GTTAAGGACAAGTACAAGGTGCTAATAGCTATCAGGGCTCTTAATATGACCAAAGTTCATACCTTTGGAACTAATTCTTG GACAACGATTCAAAATCCCATATTTTCTGAAAGTGGGGATAAAGAAGGTAAATTCGTGGGAGGTACTATGAACTGGTTGA ATAAGAGAACAGGTAGTTATGGTAATTGGGCGATTGTTTCCTTTCATATGGAGAAAGAGACTTATAGCGAAGTGTTGCTA CCTCCTAAACATGATGGTGGCAACAAGCATGTGCTGGACGTCTTGAGTAATTGTCTTTGTTTTCATTACTTTGACGAAAG TCACTGGGTTCTGTGGTTGATGGAAAAGCAGGAGTCTTGGACTAAATTGATGTTGATTCCTCATAACAGGATTTGTAATT TTAGGCTTTTTTTCCACCCTTTGTGCATTTCAGGAAATGGTGATGTTCTAGCAAAATGTTTAGATCCCCAATTAGTTCTG TATAACGCAAACAAGGGCACATATAATTATCCTAAACTCAGGGGATGGTTTAGGCCTGATATGCATATTTACCATGAGAG TTTAGTTTCACCATGA
Protein sequence (LotjaGi5g1v0286100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTCSVLSLFKNPSTRAETLSFRVEPNCQIIGSFNGLLCLYDYDGDFRLCNPSTRLTSKKSPHSFWSRQDITHFGFGYDQ VKDKYKVLIAIRALNMTKVHTFGTNSWTTIQNPIFSESGDKEGKFVGGTMNWLNKRTGSYGNWAIVSFHMEKETYSEVLL PPKHDGGNKHVLDVLSNCLCFHYFDESHWVLWLMEKQESWTKLMLIPHNRICNFRLFFHPLCISGNGDVLAKCLDPQLVL YNANKGTYNYPKLRGWFRPDMHIYHESLVSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| PANTHER | 4 | 257 | 254 | 1.5E-27 | – | |
| PANTHER | 4 | 257 | 254 | 1.5E-27 | – | |
| Phobius | 11 | 17 | 7 | - | – | |
| Phobius | 18 | 271 | 254 | - | – | |
| TIGRFAM | 33 | 242 | 210 | 1.8E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0286100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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