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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0286500 |
| Transcript ID | LotjaGi5g1v0286500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAN BINDING protein 1; TAIR: AT5G58590.1 RAN binding protein 1; Swiss-Prot: sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c; TrEMBL-Plants: tr|I1NH59|I1NH59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0286500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60315109..60319251) extracted from Lotus japonicus Gifu genome v1.2.
CAGCACAAAAACACACCACACATTCCTCCACTCTCACTACACTCTTCTCCCCACACTTTTCCAAACCCTAGCACGCAAAC CCTCTCTCTCTCTAGAAGATGTCTAGCGCCGAACCCGAGCACCGGGAAGACGAGGAGGCACCCGCCGCCGGCGATGACGA GGATACCGGAGCACAGGTCGCTCCGATCGTCCAACTCGAGGAGGTCGCCGTCACCACCGGCGAAGAGGACGAAGATTCAA TCATAGATCTGTACGCACTTTCCTTCTCTCACTCCTCACTCTTCTCTCTTTGATTTCTAGGGTTTTGATGTAAATCGGTG TTGTTTTTTCATTGATCGCAGCAAGGCGAAGCTGTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGAGAGGCACCG GTACGGTGAAGTTCCTGAAGCATAAGGCTACTGGCAAGGTTAGGCTTGTGATGAGGCAGTCCAAAACGCTCAAGATCTGC GCTAATCATCTGAGTATGTGATCTTGAATTCTGCATCTTTGATTGCTGATTTTGAATTTGATTTTGATTTTGAGATTCAG TTTTTTATTGTTGCAGTTAGTCCTACTATGTCTGTGCAAGAGCATGCTGGGAATGAGAAGTCTTGCGTTTGGCATGCTAG GGACTTTGCTGATGGTGAACTCAAGGATGAGCTTTTCTGCATTCGTTTTCCTTCTATTGAAAGTAAGTACTCAATTTCTG GATGGAATTTGTGGATAATTTTGTTCATAAGCTAATGCTAGTGTGTGTTTGATGTTTTTGTTCTTTGGATTTATACGAAT TCTGCAATTCCCTGATTCACAGTTACTTTACGTATTCATGAGTTGGTCTCTCAGATTCTGTCATCACTTGGCTTTTTTTC ATTTGATTTGCCAATGTGTATGCCTGATTTGTTGTCCATCATAATCTGTGTAATTCCTCTGCAGCTTTGTGTATTTTGGG TCACTGAATTTTGTATATTTCGATTATGTTCTTAGTTTAAACTTTGAATCAACTGAGAAAAGAGTACTTTCGTCCTCGTT CAGTGCCTCCTTGTGAAACATTAGTATGTGTGTATCTACTGCAATTCAGAGGTTGCTCTTGGTTAAACTATGCAAATTGT CTTGTGAAGTTTTTACGATATTTTCTGCAGTCTTAATCATGTATTCACACTGGGAGTTTTAGTTTTATTTTATTTTTTAT AATTTTAAGATTATAATTAGACCATCTTGTCTATCCATCTGTATTGTGAACTTTTGTTTGTTTACAAGATTTTGTAGAAC ACACTTTCTAGTTCCATAGGCATTAATGTGAATTCCTATGAAGGTAATCACGCTACCTTTTAACATGTACTGCGTACAAT CATGCCTTTGATATTTGTTCCCCTGTAAGGCCGGCCAAATGTTTTTGGTATAGCATTGCCAAGTGTCCTGATTTAGTTGA AATATCTACACATATTCCTGGTTTCAAAAGGAGTCTGTTGTGAACCACTAAAATTAGCACAAAAGATTTGGGTACATAAT CTGTTTAAATTTGGTGTATGTAGAGTAACCTTGTAACAGAAGATCTAGACTTCGCAATTATGTATTTGCAATGTTTTCAA CAGGTTTCAGGGTTTAAGACACTTATGAGCTGGTTCCTACAAGTAGTGCATAGTCTTGATGTCTTTTAGATTTTAAAATG TATGTATGACAATAATCAAAGTGCTATATTTATCAACAACAACAAAAGGCTTATCTCACTAAGTGAGGTTGGCTATACAT GGAACACTTGAACCATATTGAAGAAACAACCTGTTTTACCTGGGCTGCTGTATGCCTAACTCAACCTTCCTTAGTGATGG TTGTGACACACTATTAATACGATCAAACAATATTGTAACCTATGTCTTATCTTTTCATAATTTTGTTAGTGGCTGTATAA TTTTTTAATAGTTTAGATTCAGAACAATAGATTTTAACTGGTCCTCATGCATATGATTACTGCAATCCAAGTCTCTTTTT TTCTTTCATAGCTTTAGTGGGGTGTGTCTATAATTTTTTTATTAATTATGATTCAGAAATTAGAACAATGGATTCTTAAC TGGCCTTCATGGCATTTGATTACTGAAATCCAAATGTCATTGATATCTTGTGGATTTTGAGATCTTAACTTTTGGACGTT CCTGTCATCCTTGACATGGTATTGCTAAAATTGCTTGCATATGATAATCTGTTTTTATGAAATTCTTTTCGAATTTTTTT GTACTATGACTTGTATTTTGTGTTACGTGATATTTGGTTCTCAATAGCTTTTAAGTAATAAATAAAAATGACAATAGGTA CAGTAGTCTGTTGCCCCCTAGAAGTGGTCCTAGTTATTTAAGATTGCTGTTGGTCATTGACACACCCACTCACTTTTCAA TTTCAGACTGTTCGATTAGTGTTATTGTCAATACCAGAAGGGAAATCGCTGTTCCACTTGCCCTTGCATGTCTGCATTAT CTGTATAATAATATGTGCATGTGAACTTTTTCTCCCGATGCTCTTTACTGTGCTGTTTGACTGAGAGATACTGGAAATCG TGTGGGGGATTAATGAGATTTAGGTCTTTAATTGAACGCCCATTTGCTGGGGACTAATATGTTATTTTGCTTGCCAATAG CCTGTGTACTCACTGTCGTTTTGTCTTTTTGTTAGATTGCAAAAGCTTCATGGAAACATTTCAAGAAGTTGCTGAGTCCC AAAAGACAGAAGATAAGGATGCATCTGATGCAGCCGCTGGTCTTATTGAGAAATTGAGCGTTGAAGAAAAGGCTGATGCA GAGAAGAAAGATGAAGTCAAGACTGAGAGCAAAGCTGAAGAACAAGAACCAGCATCAGGAGAGAAAAGTAAGGCAGATGC AGATAAGAAAGATGAAGAGCCTGCTTCCTCTGCTTGATTATTATTCATTCACATTTCATACTACTTGGCAATCTGACAAG GTTAGGTGGTCGATGTTTTTCTGCCCATATTTGGGATACCCTCTTACTTAAATAGTCGTCAGATTGTGTCACTGCCTTGG ATTTGAGCTATCTGTGTCCTCGAGTATTTGTCAACAAGCGACATTAGGGTTGGGTTTGAATTTTGAGGCTTGACTGGTTG AGCTTTCGGGGCTCTGGGAGTTTTATTATTGGTATTTTCCTTCTACATATGTATTTGTTGCGAGTCTGAGTCATGTTGGT TGGGAGTGGTGCAGTCGAAAAATGCTTAAATTAAAGCTATAAACAAAGGTTTTTGGATACAAGTTGTTTGGATTTTGTCT TTTTTTTACAACTCAAATCACGTTTAAGTCATGTTTGGATATCGGTTGGCTACCATGCAAATGAATGTTAGCACTTTCAA GACAAAGTGAACAGAATTCTTACAGATTGTAATGGAAGTCTGTTCACTAACTGATATCAAAACATGTACTTATTCACCTT CCTTGAAGCATGCTAAATTACTTGGTGCTATGAAGGTGGTCTGAAATGTTGGGCAATGATTGATGTGATTTCTCTTGTTT GCTGAGAGTAATTGGCAATGATAGCGAAAGAAAACAATTGAATCAACCCAACTAAAGTATTTGCTAGAATATTGAATTTT AAGTGGGTGAAGATGAGAATGGATAATCTTAGTTGGTATAACCAAATGTGTTGGTGTGTTAGTTCCACGCTTAGTTCATT GAGTAAGTTTATGGTGTTCTCTTGTGAATGGAAAAATTAATTGGTAGCCTCTTATCACTGAGTGCGAATACTTTGGTTAC ATCACCTGTGTTCGAAAATGGGTTGCTGTGTTAGATTTTATTGAAATGGATTTTTTTTAATTAATTTTATTTAAAACAAA ATAAAATCACTTGATTGTATATGTTAAAAGATTAATGCTTGATTACAACCCATTTTGCGCACGACTTTTATTTTGAAGAC TATGTTTTAGCTTCCTGATTTTGCATCGTGTGATTTTGCATTACTGATTTAAAAATCGCATGTCAAGGATCAATTCAGCC GCTAAAAAGTCTTGCTTGTTCCCAAAATTAATTCCACTCTATTAGTAGCCTTGACAAAATTAATCTTTTCTCATCCCAAA AATTTATCGAATGAGTGCAATTAACACTATCCTATCCTATCTACCGCCAATGCGAGAACACCC
CDS sequence (LotjaGi5g1v0286500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGCGCCGAACCCGAGCACCGGGAAGACGAGGAGGCACCCGCCGCCGGCGATGACGAGGATACCGGAGCACAGGT CGCTCCGATCGTCCAACTCGAGGAGGTCGCCGTCACCACCGGCGAAGAGGACGAAGATTCAATCATAGATCTCAAGGCGA AGCTGTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGAGAGGCACCGGTACGGTGAAGTTCCTGAAGCATAAGGCT ACTGGCAAGGTTAGGCTTGTGATGAGGCAGTCCAAAACGCTCAAGATCTGCGCTAATCATCTGATTAGTCCTACTATGTC TGTGCAAGAGCATGCTGGGAATGAGAAGTCTTGCGTTTGGCATGCTAGGGACTTTGCTGATGGTGAACTCAAGGATGAGC TTTTCTGCATTCGTTTTCCTTCTATTGAAAATTGCAAAAGCTTCATGGAAACATTTCAAGAAGTTGCTGAGTCCCAAAAG ACAGAAGATAAGGATGCATCTGATGCAGCCGCTGGTCTTATTGAGAAATTGAGCGTTGAAGAAAAGGCTGATGCAGAGAA GAAAGATGAAGTCAAGACTGAGAGCAAAGCTGAAGAACAAGAACCAGCATCAGGAGAGAAAAGTAAGGCAGATGCAGATA AGAAAGATGAAGAGCCTGCTTCCTCTGCTTGA
Protein sequence (LotjaGi5g1v0286500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSAEPEHREDEEAPAAGDDEDTGAQVAPIVQLEEVAVTTGEEDEDSIIDLKAKLYRFDKDGNQWKERGTGTVKFLKHKA TGKVRLVMRQSKTLKICANHLISPTMSVQEHAGNEKSCVWHARDFADGELKDELFCIRFPSIENCKSFMETFQEVAESQK TEDKDASDAAAGLIEKLSVEEKADAEKKDEVKTESKAEEQEPASGEKSKADADKKDEEPASSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 1.4E-103 | – | |
| PANTHER | 1 | 222 | 222 | 1.4E-103 | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Gene3D | 10 | 174 | 165 | 7.7E-54 | ||
| CDD | 24 | 157 | 134 | 1.48084E-69 | – | |
| ProSiteProfiles | 26 | 161 | 136 | 34.546 | ||
| SMART | 27 | 155 | 129 | 2.8E-42 | ||
| SUPERFAMILY | 29 | 156 | 128 | 4.0E-43 | – | |
| Pfam | 38 | 155 | 118 | 2.9E-41 | ||
| MobiDBLite | 159 | 223 | 65 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular transport | The directed movement of substances within a cell. |
Expression pattern of LotjaGi5g1v0286500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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