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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0287000 |
| Transcript ID | LotjaGi5g1v0287000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlororespiratory reduction 3; TAIR: AT2G01590.1 chlororespiratory reduction 3; Swiss-Prot: sp|Q9ZVE7|CRR3_ARATH Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic; TrEMBL-Plants: tr|I1KKS8|I1KKS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0287000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60370013..60378416) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGATCTTATCATCTGCATGAAGCGTTAAACAGTCATTGAAGCCACTCACACAAAACTCAAACTCACTCGCCATGTAT TGCTTATCAATAAAGAAACCCATTGTTGCCAGTTCCACTCTTCCCCCTAAACCCGATTCTTCTTCTTCTTCTTCTCCTCC GCAACCAATCAACCCCAGTCCCCAAAAACCACCTTCTTCCGCCGCCGGAAAACCCCCAATTTCCTCTTTACCGCGAAACA GGCTCCGCCGTCGACTGCCACAACCCTCCGTCATCCGAATGGAACGCATCGTCGGCACCGGAAGCTTCCGAGACGGCGAA CCCGAGCCCAAGTACACTCTGCTCTGCTTCTTCTCTTCATTATTACTGATTAATTAATTATGTAGAAATGTAGAATATAT GTTAATGATTGTGTTAGTAAAAATGAGTTGCTAATCCAAACTGGAATTCCAAGTGCTCATGTTCTATAGTGAAGGATTTA GCTTCTGTAAAGTGTAAAGTGAAGAGTGAAGTTTGGAATTATAACTGTTGATAAGAAAATCCATGGTTGAGATTTTCATT ATATTGTTATATGTGTGTGCACATGCATTGTTTCACAATCACAAACTATTTTCTAATGTATAGTTATCGATGCACGATAT CCGCTAAAGTTATTGTATTTTATCTTCAAAAGTGCACTGGAGTCGGATCTCTAATTGGAAAGGTATTATTTTCATTAATT TATCCCTGGAGTTTGGCCAGAAAGTAAATCTAAGTGCTCTATAGGGAAGGACTAAGCTCCCCTAGAGTGAGGAGAGCACT CGGAAGAATGAAGTGTTGAATCATAAAGTGTTGATCAGAAAATCATGGTTGAAACTTGAGATTTCAATAAGTGCATAAAT TGTCATATACGCATATGTATTGCATCATAAACTATTTTCCAATCAACAGCTATCATTGCACTTTATCCTCTAAAGTAATG TTCGGCAGCCAAATCTGTAATTGAAAAAAGTATCATTTTCATTGAATTCTTATTAGTATTTTCCTTGCTAGAAATCATGT TAAGAGTTAATTGGAGTTAGTTGAAAATATAACTAGGTTCAGTTATGGTTGTGATAGGAAGGTTAGGTCCAACTATATGT AGTTGGTACTTGGTATCCCCTGTATACTGTAATTCAATTGGTTTAGAGACACTTAATAAACATTTAGATTGGCTACCTTT CTATTCTCCCTCTATTTTTCTTAAGACTCTCTTACACTTTCTTGGTTTAACCACTATCAGATTTAAATGCGTTTACAATC AATTTCATTGAAATGCACCATTTTGATTCCAATTTTTATGTTTTCATTTTTTAACCTTTTTGGCTTTTAATAATGAACAG AGATTCAGACGTAAGGAAGACTATTTTTGACTTGTTCTTGGGGCAAGCATTTGAAGGGCCGGTTGAGAAGAAGCTGAGAG AAACAGGAGAGTGGGTGGCTGCCAATAGCGAGGCCAGATTGCGTTCCGCTGGTAGTTATTTTCCTTAATATTTGTCCCTT TAGCTAGAATTGTACCCTTTTCAACACCCTTGCTGTCATAAATTATAGCGACACATTCTCTTATCTTATTCCTTTTTAAC ACCACATTATATTGTTGAAGAAAGTTTACGACTCCCAGAAATTAGAGTAGATCTTACCTGAGACTAACGTGATTTAGTAG GACCCTCATAATAAAAAAATTGTTGAATAGAGTGTGTTAGAGTTTTGTTTGTAATGTTCCTTTTTCTGTTATTATATATT TCTTTTTGTTTAGGCTTTTGTCTGTGATTGAAAGTTATATCATGTGCTGGGATATATATTGGTTATTTTATTGTTTTGAT ATGAAGAAATGGCATGTAAATTTTTTGTTGAATTAATTTTGTGTAATGGTAGAAGAATTTCTCATGTTACTGAATACTGG CTAAAACACACTGGACTGTAATAGGGTAAGACCGCCCATAACCAAAGTGTCTTGTACAAGAGGGACTTAACAGTTAGAAT AATAGAATGGAACTTAAATTCTTATAGTAACTCCCTATTGGACCAGAATAGAAGTTAATTGTAGCTGCCAATGTAGATAT ATATTGAGTAGTATAAGAAAGAAGAGGCAGATTTGGCTTTGTATAGTTTCGTTTGGGAGAGGAACTGAGCTTCTCTAATT ACTCAGTACTTTTAGAATTTGCATTGTTCTCTGAAACCTACAGTGTGTTTAATTAATATGTGTTGTTTATGTAATAATAA ATGAATTCTTTCTCTTAGTTCTATTTACCAGTTAAGTCTGGCTACTTATGAATTATGATTATGAATTAGTATTGAAAATA TTGAAGATGTTTTATGAAGTTCCAAGAAGTGTGTTGAAAAGAGCGAGTTATGGAATTTGTTACTGACAATTTCTTCTGCT GCGACTTTGACTTGTCTTTGTTGGGACTTTTGTCTTGGTGACCGCCAATGGAAAGTGTTTTACATTTTTTATTGTTTGTT GTGAAATGATGACGTGTCATTTTTTGGTGAATTAGTTTAAGTATGTTTCTGGAAGGATTTCTCAACTTACTGTCCGAATC ACTTAGGCTGCTTCTGAATTTATAGTTGAAGTTTTCAAGATTTTGGTTGAAGTAGTTTGTTTAGGTGCTTGCTATGAATT TCAAAAAATTGAGCCTGCTCAAGGTTCTGTACAGCTTGAGGAATTGTGAGTTGCCTCTTGAGGAAGTTCAGGGACTAGCT GGAATTCTGGAGCTTTTACTGTTTACCTTTTTCTTTTGTGGATTATCAGGTTCAGGTCTGCCTCACTGCTTTTTGTAGTG TTATTTTTTCAAAAGGCCTTCAACTAACCATCACTTACAATGAAGATACTTGACATTAATTTTCAGCAAAAAGATCCTGG TATGAGGTTTAGACTTTATACGATAACTTGGGTACAAATTGCTTGTTAACATTAAATTGTATGGTGAGACTTGTATGTTA ACATTTGTGCACCCATAGTCTTCCATCAATCATAATATTGTTAGGTGTCTTTCCTTGCCACGATGGAATGAAGATATTCC AAATAACAATGTATTTTTATGATCCAATTCTTTTTTCTGCCTTGAAACATGAACTCCATTCAGAACATCCGGGGATTTTG TTGCTAAGGGACACTTACCAATGACAGTCTCAGTTAGTAGTGTTTTTTTTTTGGAATAGTTGGAAATGGTTGGACTGGTT TGTTGGGACCTAAGTTTCTATTTCCTATTCTTGAGCAATAAGAAATTTCTATCTCTGCTTCCAGGATCACATTAATTCTG GGTTTAGGTTTCTATTAGTGTAATTTTTCTACTGATACTACCAGTTCTAATATCAGTAGTTATTTCCTTTATGGGTTTAG GATTCTATTCTTCTATCCTAACAACTAACCAACTAAAGTGGGTTACAATTAGTTTTTTCCTTTACTCTGTTTTCACCCAA CATACACTTGTTTAATGAGAGTTTTAAGCATATGGCTATCAAATACCTTACAGGTTATTTAAATTAACCTATTCTTTCAT TTACTATTGATCTTTGAAACCCAATGTGTCTAGCCCTCGTGTTATAATTTTCTATTTCTAGGTTTTTAACCATTTTAAAA TAGTCTCAAATATGAAATAGTTGTTGATAATTCTTTTCTTTCTCTCTTATTTATTTATTAATTTAAATTGTTGCAGGAAA AGGGACTCTAATGTTCATGTTTGTGTGGATGCTACCAATTTGGGCTATATTACTCATATTAGCTACTGGAACCATCAAGT TACCATTCAGTAGCCCTTTTCTTGATGAGATCCTCTTGTGAGCATAGGCCAGCTACTTTTTGTAGATTCAGTGGTAGTAA ATTACTTAAGGTTGTGTTTGGATGGGGTGATTTTTGGGGGGAATGTAATTCTAGAGGGTATTTTAAATCCCTTAAATTGA AATACCTTGTTTGGATATTTATTTGTGGAATTCTGAAAATACTGGTAATTAAAAGAGGTAATTTAATTAAGGGATTATGG AGTAATCAGAATACCCTCAAAATAGGAAGTAATTGGAAAATCCACCCAATCTCGCTCTCGCTCTCGCTCCTGATCTCACT CTCGCTCTCTTGCTCTCGCTAGCGATCTCGTTCTCTGCAATCTCGTTCTCTGCAAATCTCGTTCTCTGCAATCTCGCTCT CCCGATCTCACTCTCTCTGCAATCTCGCTCTCTCGTTCTTGCTCTCCCGATTCATGGAGTTTCTTCCCCCTTGATTCAGG TACAATCTCTTGATTCTTTCACCAATTTTGCATTATTGTTGTTGTTTTTTCGAATTTGATTTTGTTTTTGGAGTTGAAAT ACCTGTTTTGTTCTTGTCTTGAGTTTTGTTTGTTGATGCTAGTACTGGGTTTGTCATGTTTTTTGCTCCATTTTGTGCCT GGTTCAGAAGCAGATGAACATAGGTGTGAACATAGGTGTACTGGGTTTGTCATGTTTTTTGCTCCATTTTGTGCCTGGTT CAGAAGCAGATGAACATAGGTGTACTGGGTTTGTCATGTTTTTTCTCCATTTTGTGCCTGGTTCAGAAGCAGATGAACAT AGGTACCTTCTTCGCCATAAGCATTTGAGTATCTTCCATCGTAGGGGACTCAATCTTGATGGTTTCTTCAAGTACCTCTT CAGTGATGATAATCCACCTCTGTTACCTTCTATTGGGGTAAACTAAACCTTGTGATTTGTGTGTTCTTGTTCTGTGTAGT TTTGAACATGAGTGAGAGCTATGGATTTGGTTTTATATGGTTTCCTATTGTGGATTTTACTAAATTTATGACCCTTTTCA TTTTGTGTTCTTCATAGTACTCATGATAGTTCTTAACAACTAGTAATGTCAAATTTATGGTGAATTTGTAGCGAGTCTGT TTCATTTTGGTGCTAAGTGTGTAGTTTTAATCATTTAAGTGGGTGTTGGACAGAACCCATTGTCTATTGGAATTTGTAAA TTTGTAGACTTGAAGCTATAAGGTAAAATATAACAAAGGGTTTTGCTTGGGCCATGTTTTAGATATTGGAATTTGGGGTG AACCTTGTCTTGTTTGTTTGGATTTGTATATTCTTGTCCTGTGTAGTTTAACATGAGAGAGAGCTCTGGATTTGGTTTTA TATGCTTTCCAATCGTGGATGCTATTCTTATTAGAGTGGATTGTGCCAGATTTAGTACCTTCTTTCCTTTTGTGTTCTTC ATACTCATAATGTTTAAGAAATATGCTTAAATTTTCCCCTCCTCTTGTTTGCATATTGATATACTATATAGCACTTTCAG CTTCTCTTAGGTGTAGTTTCTGGTTTGGTTTGAAATTATGAACACAACTAAGCAATCAAACTCACAGAGTGTAGTCTTTC TCTTCTTTCCTTCAGCTAAGGTTGTGGTAGAACTTGCGAAATCCAGACTAATCCTTGCTTTCCTCAATTTTCAGGCACAA AACATCACTTTTGGTGAGCATGTCAAGAGATTCTAAGGTTCTTGTTTTCCTGTCTTTTATGTTGTCATGTCCATTTACTT GTCTATCTACTTAATTTTGAATTTTCATTTACACTGTCAATTCTTCCTTTCCTGTCCTAACATGCTTTGATTGTTTCAAT AGGACTATAGGTACTAATCAATAAGTTGTTTGTGTGTGTTGTAAAATCTAAAAGAGGAATAAAGTTATCTGTGAAGTTCA GTTTATAAAAAATAGTTTTCCTAGCGGAAGCTAACAGAGATCTAGAGTGTTTTTTCCTTACTAAATGAATATTTATGTCT TTCTAGTATTCAATCATTATTTTTATACTATTTGATTAATCTGACGTATAATTTGTAGCTTCAAATTGATTGCCATGGCA AGTTCATACTTTTTAGATATTTCTTTCACTTCAATGCTCCAGTACTTTTTACTTTTTTAGAGAATGTTTTAACTTAACTC TTCACATTTTCTTAGTGAGCTTGTACACATCCCTTGTCCTTTTTAATCACATCTTATCCATTTTATGTTTAAACTAGCTG ATTCTGAATCTGATTGAGTTAGCTTCTCTTACTTCCTATTTTCTTTATAGTGTCATGCAATATTGATGTTTTATTATATG TTTTTTTTATAGTTAACAAATGGATCTTAGAGTAGTTGACACTTCAGTTCTTTTACGAAAACGTAAAAGAAATGAAGAAG AAGAGGCAAAATTGCAAGAGCAAATAACATTCATTGTTGCTAGTGTCGTTGCTATGCTTTTAGGTGTAGTAGCTTGGTAT CATGAGATGCATTTTGTTAAGGAACCGTCCCGAAATTGGGAATTGGAAAGACGCAATTTCCTTAATCGTCTATATAGAGG AACTGAAAGTGATTGCATTGAACAATTAAGAGTCAGTAAAAGGGCATTTTTTAAACTTTGTGGAATTTTACAAGATAAAT GACAGTTGGTAAGAACAAGAAATGTCCCAACGATTGAAGCAGTGGCAATGTTTTTGCACATCCTTGCTCACAACCTAAAG TACAGAGTAGTGCACTTTACCTATTATAGATCCAAAGAAACAATAAGTAGGCAATTCAACAATGTCCTACGAGCTATGAT GAAAGTGAGTGGGGAATATTTGAAGTTTCAAGACCATAATAATCTAGAGGGCTCTGAGGCATACAAATGGAGATGGTTTA AGGTAAACTTATCACAAGCTTGAGTAATTATGAGATTTCTAGTAATTACAACTTATTTATGATTTTTAAACTTTTTTAGA ATTCGATTGGAGCACTTGATGGGACACATATTCCAGTAACAGTGGCAGCAGAAGATAAACCTAGATACCGTAATAGAAAG GGTGACATCTCTACGAATGTGTTAGGGGTTTGTGGTCCAGATTTAAAGTTTATTTACGTGTTACCTGGTTGGGAAGGCTC GGCAGGAGATTCACGAGTATTGCGAGATGCTTTACGTCGTCAAAATCACCTTCAAATTCCGAATGGTAATATTCTCAACC TTGATACTTTTTTTACTATATTAAATACAATTATATGATTTTTGTTTTCTTGGAAAAAAACCATCGCAGGTAAATACTTT CTGGTCGACGCAGGATATACAAATGGCCCAGGATTTTTAGCACCTTATCGAGGGACTAGATATCATCTCAATGAGTGGAT TGGAAACACCCCTCAAAACTACAAGGAGTTGTTCAATCTCCGTCATGCAAGTGCAAGGAATGTAATTGAAAGATCATTTG GGATATTGAAAAAACGATGGAGTATATTAAGAACTCCATCTTTTTTGATATAAAAACACAAATAAGAATGATTAACGCTT GTTTCGTACTGCACAATTTTATAAGAGATGAGCAACAATATGACCCAATTTTAGAGGTCCAGGACTTGGAGCTTTTATCG GTTGTTGATGAAGAGTTAACCAGTCAACATGGGGAAACAATTACAAGTAATGTTGCAAATGAGGTCACAACTATTCAAGT ATCTGAGGCATGGACAACGTTTCGGGACACTTTAGCAATGGATATGTTTGTTGAATATCAACATAGGAGAAACTTAGTTT AGGGACAACATGTTATCAGTTGTCTTTGCTTTCTACCTTGTTTGTTGTGTCTGTTATCTGTTTTTCCATTTCTTATGTGT TTCTTGTTTATTTTTGTAGTTGCTTTGTTCTGTTGTGTGTGTTGGCTCACTTGGAAGAGCCTTGTTTCCAAGCTTTTTAT CCTATTAATATTAATTGAATGATTGATCAGAACTAACTGTGGCTTGATTCATCCAATTATTAGTTAAATGCTTAGTATGT TGTCTTGTATATGTATATTCTGTTTATTTTCAGAAACTCTTCATGTTTATTTATTTTCAAACAGGGTTACAGCTGGACCA GAGACTTGGACAGTGAGGAGCTATTGGAACAGTTGCTATATTGACTTGTTGGTTGCCGGGTAATATTTTATAACTTGAGG ATATTCATCATCTTTTTGTTATTTGATCTGTTTGCTGTGGACACTTCAATTAGGTTCAAGTGCTCTATTTTTCTTCTGGT TATTAGTAATTGTCTAATGTTTGTTTATGTTTGAAGGAGAGATGAGGGGAAAAAGGAAAATGACGGAAGCTAGTAATGAG GATAAGAAAGATGATAGCAGAGCTTACTTTACTTGGAACTTGGAGATGGACCGTGCACTTGCTGATATACTTAGAGATCA AAGAAGCATGGGAAACAAGAGTGATGGTGCATGGAAAGGAGTGGCATATAACACTGCAGCTCAAATATTGTCTTCACGCT TCAATTTGCAACTTATTGGAGAGAATGTTAAAAACCGCATCAAGCTGTGGAGATCATGGTATGGCATTGTTAGTGACATC CTTAGTCAAAGTGGTTTTGATTGGGATGGAACCAAATATATGATTTCAGTTTCAAATGAAGATGCATGGAATGAGTATGT CAAG
CDS sequence (LotjaGi5g1v0287000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTGCTTATCAATAAAGAAACCCATTGTTGCCAGTTCCACTCTTCCCCCTAAACCCGATTCTTCTTCTTCTTCTTC TCCTCCGCAACCAATCAACCCCAGTCCCCAAAAACCACCTTCTTCCGCCGCCGGAAAACCCCCAATTTCCTCTTTACCGC GAAACAGGCTCCGCCGTCGACTGCCACAACCCTCCGTCATCCGAATGGAACGCATCGTCGGCACCGGAAGCTTCCGAGAC GGCGAACCCGAGCCCAAAGATTCAGACGTAAGGAAGACTATTTTTGACTTGTTCTTGGGGCAAGCATTTGAAGGGCCGGT TGAGAAGAAGCTGAGAGAAACAGGAGAGTGGGTGGCTGCCAATAGCGAGGCCAGATTGCGTTCCGCTGGAAAAGGGACTC TAATGTTCATGTTTGTGTGGATGCTACCAATTTGGGCTATATTACTCATATTAGCTACTGGAACCATCAAGTTACCATTC AGTAGCCCTTTTCTTGATGAGATCCTCTTGTGA
Protein sequence (LotjaGi5g1v0287000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYCLSIKKPIVASSTLPPKPDSSSSSSPPQPINPSPQKPPSSAAGKPPISSLPRNRLRRRLPQPSVIRMERIVGTGSFRD GEPEPKDSDVRKTIFDLFLGQAFEGPVEKKLRETGEWVAANSEARLRSAGKGTLMFMFVWMLPIWAILLILATGTIKLPF SSPFLDEILL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | - | – | |
| Phobius | 1 | 133 | 133 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| PANTHER | 3 | 169 | 167 | 5.0E-46 | ||
| MobiDBLite | 22 | 43 | 22 | - | – | |
| TMHMM | 134 | 156 | 23 | - | – | |
| Phobius | 134 | 156 | 23 | - | – | |
| Phobius | 157 | 170 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Photosynthetic electron transport in photosystem I | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. | ||
| Cellular component | NAD(P)H dehydrogenase complex (plastoquinone) | Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool. |
Expression pattern of LotjaGi5g1v0287000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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