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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0289200 |
Transcript ID | LotjaGi5g1v0289200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ethylene-responsive transcription factor; TAIR: AT2G33710.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112; TrEMBL-Plants: tr|A0A1J7HVF0|A0A1J7HVF0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60592143..60595087) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACCTAATCCACAAACTTTTTACATCTTAATCTTATCCTTTTACTTACGTTACACATTCAAGCAAATCCATAACATT CATCCACTGACTTTATGATTTAATCCTATTCTTATTCTGTGCTTTCTTTTACCATACCCACCATCAGTTAACCATGGGCT AACAACAATTCCTAGAGCCCAAAATATTAAAACCCATTCAATGCAACATGATGCAATGAACCCAAAAAATATCAATAGGA AGCGTGAGTGCATGCGTGTGTGTGTCTGTCTATATATTAAATTATTATGCATTTGTTTTGACTTGCTTGCTTATATGAGC ATAGAGTTCAATTCAAAGATGATCACCGTTTCTTTTCCATATCTCAAAAGGGAAACCGACAATTAATTTGCAGAGGGTGG TTCATGCTGCTAGTGTTAGCTAGTTAATTCCATTTTATTTGCATCCCCACCAGTCAAATAAACCTTTCATGCTAGCCAAA TTCATCATCTCAGAGGCGGCAACCTTATATTTATTTAACTTGGTACAGTATTTATCATATATTATTCATCTTTGAAGCAT CAAAATTCGAATAGAGATTTTTGGAACTAGAATAATATTAAGCCAAAAAAGAAAATTGTTATCAGAAAAGGTGCTACATA GTGCTAGTGGTGTAGTGGTGCATGTTTATGGTTAGATCCTCATCATATTCGATTTCTCTTACTCTAGCTTCTTATATAGT CATGTTAATTTCTATCTAAGAAGGAATTATTCGAAAGAAATTCTAGGTTGATCTTATCTGCAAAGTGCAAACACATCAAA TTAAAAAGCAGAGTTGCTAAGGTTACATGTGCTTTCCAACGGTGGCGCACCAAAGGGGTTCAAGCGAGTTTGTGAGGTTC ACGGCGGAGCAACACGGCGGTGATGAGGAAACGGAAGGTAGTTCAAGACAAGGTGATGGTGATGGTAGTGGTGGAAGTGG AAGCTCAGGGCCATCATCATCACAGTTCCAACTGGTGCAGCAGCAACAAGGGAAGGTGGCAATGCCTGGTCCTCAAGTTT CGGTGCCGACCCAGGCCCACACCGAGTGGGTCCCAAGAAGTGGTTTTCCTTTGATGTCACGTTTTGTCCTTGACCACCAT GGCCCTTCTTCTCCTCGTTTGTATTCTTCTTCATCTTCTTCTTCCTCTTCTTCTGTTTCTGGTCCTCTATTGGGATTTTC TGCTACTTCCTCTGCTTCTGGTTCATGGGTTGGGCACAAAAGAGGGCGTGAAGAAACTGGTGCTGGTTCTTCTTCTCAAT TGTTACAAGATGTCACTGCACCTAACAGAAACATTGGTGACTTCAGAGTACCTTCACAACAATCCCAACCACAATCATCA TCCTCAGGTGCAAATGATTCTTTTGCCCTCTCTTTATTATATTTTTTTTAGAGAAGACTAGTACCTTGAATAATAAATAT ATATCATATTAAAAATATAACATGTTGCTGCATGCGCGCATGCCCCAAATTGTTGACCAATTGTTTATAATCCTGCTATT CAATTAAGTATGCACCAAACAATTTTTAGAAACAATGCAATTAGAAATGAAACTTAACTAACATGTCACTTACTATAGAA CAGTGCTTAAATTGTTTAATAGAGATACATCATTGTATTGTAGCAATTTAAACATTGGTACAAATGTTTGTGTATGTGAT TTTTGTTTTGATTTGGAACAGCAACAGAAGCAGCTACAACAGCTACATCTAGTGAAGCATCAGCATCACCATCTGAAGAA AGTGGTGAGAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGACCGTGGGGGAAATGGGCAGCGGAGATTCGTGATCCTCA CAAAGCAGCTAGAGTGTGGCTTGGAACATTCGACACAGCAGAAGCTGCAGCAAGAGCTTATGATGATGCTGCATTGAGGT TCAGAGGAAACAGAGCAAAACTCAATTTCCCAGAAAATGTAGCACCAGTAGCACCAGTAAGGCCGATGAATGTTCATGCT TTTCCGACCATCAGGACCACGGTTTCTGCTTCTCCGGCAACCCTTTATTCCCCGGCGCCGCCGCAGCCTCCGATTTTTCC TTTTCAGGGTCAGGGGACTTCTGATTCGATCAGAGACTATTGGGAATATTCTCAGCTGCTGAAGGGTTCAGGGGACATCC ATGGACTTGAGCAATGGTTCTATGAATCACAAATGGCAGCGCTTCATTCTTCACAACAAATGGCAGCACTTCATTCTTCT TCTTCTTCATTGTTATCTCCATCACAGTCGCTTTCTTTGTCATCATCTTCATCGCCAACTGCATTTTCACCCTCCAGTCA ACTCTCCTCTGCTTCATTTCCCCTGTTTTCTGGTCAGCAAGTGGGGCTTTTCCGGCCGCCAGGCGACCCCTCTCGCGGCG GCGGTGACGGTGGTAGTGGATCTGGTTTCCCACCTTCAACATGGTCAGATACAAGTGGCTATCCACCACCTCCTGGTTGA TTGATTTGGTATAGGATACATACGCGTCTTCTTTTCCTTTTTACTTTTAATTACTTACTACTTTCTTTCTTTATTTCAAA TACCAGCAAAGGAAAAATAAGGTCTTGTTTGTTATCCCACTTCTTTTTTAAATACTAGTTCTTTACCCGTGCGTTGCACG GCGATTAATTTTATTGTAAGGATGAATCAGTATTAATGTCTTTTAACTTAGTTTAGACTCTTTTAAGTAAGTATGAAAGA TATAAAACCGAACATATGTTACAAACATGTAAATGAATTGACCACAGTAAATATATTAATTTGATGAGGTTGTAGATACC TCACATTGTCAACACTTGAATAGTAATAAAAATCAAAGTTTTTAAGTAATGCATTACATGGAAATTGAAATAAGATAAAC ATAACAATGACAGCAACATGAACGCTTATTCGAAATTGTAGTCCATGATTAATGATAAAGACTTC
CDS sequence (LotjaGi5g1v0289200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTTTCCAACGGTGGCGCACCAAAGGGGTTCAAGCGAGTTTGTGAGGTTCACGGCGGAGCAACACGGCGGTGATGA GGAAACGGAAGGTAGTTCAAGACAAGGTGATGGTGATGGTAGTGGTGGAAGTGGAAGCTCAGGGCCATCATCATCACAGT TCCAACTGGTGCAGCAGCAACAAGGGAAGGTGGCAATGCCTGGTCCTCAAGTTTCGGTGCCGACCCAGGCCCACACCGAG TGGGTCCCAAGAAGTGGTTTTCCTTTGATGTCACGTTTTGTCCTTGACCACCATGGCCCTTCTTCTCCTCGTTTGTATTC TTCTTCATCTTCTTCTTCCTCTTCTTCTGTTTCTGGTCCTCTATTGGGATTTTCTGCTACTTCCTCTGCTTCTGGTTCAT GGGTTGGGCACAAAAGAGGGCGTGAAGAAACTGGTGCTGGTTCTTCTTCTCAATTGTTACAAGATGTCACTGCACCTAAC AGAAACATTGGTGACTTCAGAGTACCTTCACAACAATCCCAACCACAATCATCATCCTCAGCAACAGAAGCAGCTACAAC AGCTACATCTAGTGAAGCATCAGCATCACCATCTGAAGAAAGTGGTGAGAGGAGGAGGAGATACAGGGGAGTGAGGCAGA GACCGTGGGGGAAATGGGCAGCGGAGATTCGTGATCCTCACAAAGCAGCTAGAGTGTGGCTTGGAACATTCGACACAGCA GAAGCTGCAGCAAGAGCTTATGATGATGCTGCATTGAGGTTCAGAGGAAACAGAGCAAAACTCAATTTCCCAGAAAATGT AGCACCAGTAGCACCAGTAAGGCCGATGAATGTTCATGCTTTTCCGACCATCAGGACCACGGTTTCTGCTTCTCCGGCAA CCCTTTATTCCCCGGCGCCGCCGCAGCCTCCGATTTTTCCTTTTCAGGGTCAGGGGACTTCTGATTCGATCAGAGACTAT TGGGAATATTCTCAGCTGCTGAAGGGTTCAGGGGACATCCATGGACTTGAGCAATGGTTCTATGAATCACAAATGGCAGC GCTTCATTCTTCACAACAAATGGCAGCACTTCATTCTTCTTCTTCTTCATTGTTATCTCCATCACAGTCGCTTTCTTTGT CATCATCTTCATCGCCAACTGCATTTTCACCCTCCAGTCAACTCTCCTCTGCTTCATTTCCCCTGTTTTCTGGTCAGCAA GTGGGGCTTTTCCGGCCGCCAGGCGACCCCTCTCGCGGCGGCGGTGACGGTGGTAGTGGATCTGGTTTCCCACCTTCAAC ATGGTCAGATACAAGTGGCTATCCACCACCTCCTGGTTGA
Protein sequence (LotjaGi5g1v0289200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCFPTVAHQRGSSEFVRFTAEQHGGDEETEGSSRQGDGDGSGGSGSSGPSSSQFQLVQQQQGKVAMPGPQVSVPTQAHTE WVPRSGFPLMSRFVLDHHGPSSPRLYSSSSSSSSSSVSGPLLGFSATSSASGSWVGHKRGREETGAGSSSQLLQDVTAPN RNIGDFRVPSQQSQPQSSSSATEAATTATSSEASASPSEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTA EAAARAYDDAALRFRGNRAKLNFPENVAPVAPVRPMNVHAFPTIRTTVSASPATLYSPAPPQPPIFPFQGQGTSDSIRDY WEYSQLLKGSGDIHGLEQWFYESQMAALHSSQQMAALHSSSSSLLSPSQSLSLSSSSSPTAFSPSSQLSSASFPLFSGQQ VGLFRPPGDPSRGGGDGGSGSGFPPSTWSDTSGYPPPPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 77 | 77 | - | – | |
MobiDBLite | 20 | 34 | 15 | - | – | |
MobiDBLite | 35 | 77 | 43 | - | – | |
MobiDBLite | 99 | 212 | 114 | - | – | |
MobiDBLite | 102 | 134 | 33 | - | – | |
PANTHER | 106 | 413 | 308 | 2.2E-76 | – | |
PANTHER | 106 | 413 | 308 | 2.2E-76 | – | |
MobiDBLite | 145 | 197 | 53 | - | – | |
Gene3D | 206 | 267 | 62 | 3.0E-31 | ||
ProSiteProfiles | 207 | 264 | 58 | 25.699 | ||
SMART | 207 | 270 | 64 | 1.8E-38 | ||
Pfam | 207 | 256 | 50 | 3.8E-13 | ||
SUPERFAMILY | 207 | 265 | 59 | 1.63E-22 | ||
PRINTS | 208 | 219 | 12 | 1.2E-11 | ||
CDD | 215 | 266 | 52 | 1.48248E-14 | ||
PRINTS | 230 | 246 | 17 | 1.2E-11 | ||
MobiDBLite | 399 | 439 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0289200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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