Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0290200 |
Transcript ID | LotjaGi5g1v0290200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphatidylinositol:ceramide inositolphosphotransferase; TAIR: AT1G43580.1 Sphingomyelin synthetase family protein; Swiss-Prot: sp|B8ACH9|IPCS_ORYSI Phosphatidylinositol:ceramide inositolphosphotransferase; TrEMBL-Plants: tr|I1NH32|I1NH32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0290200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60680155..60683318) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGGTGGCAGGCGCCGCCGGCGAGAAACGCCGGCTTAGGCGTCGCCGCCATGTCCTACGTGGCCGTTGACTACCTCCG CCACCTCTCACCAACATGGCACTCGCGTCTGCAACCGGCGTTGTGGACCCTCCTCGCCCTCGCCGCCGTGGCTCGAGTCC CTTCCTACCGGCACTGGTCGGCGGAGTTTCGTGCCGCTATTCCTTTCCTCGCCTCCATGCTCTTCATGCTCGCCGCTCTC CTCTTTGAAGCAATCTCCGTTCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCGGTAACTTCGATCACTCTCACC AGTTTTCTTCTTCAGCTCGTTGCTTCTTATCCTTAATATTGATCTTAACGAGGTTCTAGAGAGTGGATCTTGTTTGAAAA GTGGGTTTTGAATTTTGAAGGTGAATCATGAGCTAGTAAATGCACTATGTTGTTTGTTTGAGTTCATATTTCAATTTTAA TGATGTTCTGTTAGAGATCCAAGCTATTAGTTTTGATCACAGTGTGCAATGATTCACAGTTTGTTTCTAATTTTGAGCTT CTGGGATTTGAGTGATAAGTTTCTAAGTTCAGATCTTAGTTTCAAGTTTTAGCTGTTTTTGGTAACAATGTTAACTTTTA GCTGCTTGGGTTGGTGCAGTTAGAATAAACTTATGTTGAAGTTGGATTTTTACAAAAATGGATTATTTGCAGTGAATTGG TCAGAGGTAGAATCTTAGCCTTCTAAGTATTTGTTGCAGAGATTAAAGTTAAAGTGTAAATTGTGGTATTATTAGAAAGT TTCATCAGAAATCAAGTCCTGCTTGTTTGGACCTATGTTGATATTTATGAACTACTATACAATTAATGGGATGGTTAGTA CAAATGATCATGTTTTAACAAGTGTATAATTACTACTTACTTTTTAGTATTCGCTTTGTTCCTTATTATAAGAATCAAAT AACTACCGCACATCCCTTAAGAAGTGTAGTTAATGTTGGCAACATTAAATTTGTTCTCAAATTTTTTTTCCAAAATTGTT ACACAATGGAAAGAGAGAGAAAGTTCTATTATGAGAACCAAATAACTACCTTACACCGTTTAAGAAATTTAGGTAATGTA GCTGACAATATTAAACTTGTTCTCAATTTATATGAACTTTCCAAAATTACTCATGACATATTTTTCTTATTTTCTATTCA TCATTAATGCGTCATAAAAAGAACAAAACTTATAGTATATCAAATTCTTTATATCCATTTTAACAAGTTTTCCAATGACA CGCGTATAATTTTTTAAAATTCAACATTAAGTTCTTAAGGAATGCCATTTACTTCTAGAAATAAAATCCACTTGTTAATG TTTGAATGGACAACTTGATGGAAATGATATAAAAAAATTTATCTTAGTTTTTTTTCCCAAACTATACCTCCAATTTGGTT CTTATTATGTAGTATCTGATTTCCTATAACTATGGCTTGTTTTGGCTTATTTGACATGAACCTAACTTCAACCTGCTTTT GTATTCACTTTTTGAAATATGAACTTATTTAGTTTTGTTGTCTTACAGGAATACGCCACCTCTTCCAGACACTGGTCAAT GGTTTCTCCTGGCATTAAATGAGAAACTTCCTAGTGTAATTGTTGAGATATTAAGAGCACGCATTATTGGATTGCACCAT TTCTTGATGTTGTTTATGATGTTGGCGTTCTCTGTGCTATTTGACTCTGTAAGAGCTCCTGGACTTGGACTAGGTGCTAG ATATATGTTTACCATGGCAATTGGCCGCCTTCTCCGTGCCATAAGTTTTCCATCTACCATTCTGCCATCAGCCCGTCCTT GGTGTGCAAGTTCTCGGTTTAGAGTTCCGTCATATCCTCATCGTTGGGCTCAAAAATATTATGTTCCCTATGCTTCAGAT CATAATGCTATCAACCAGCTGATAAAGCTAGATAAAGCTTATGGTATGCACACTATTATTTCACTGGGTTCTTGTCATTA CTCTTATTAAGCTTAGTCCCCAGACTTTGTACTTATTTACTCCAGGGAAGCTTATATCGTAGTGGCCCGTAATATTAATC AATTTATTTGACTTGAGTTGGTCATCTAAACTATCCTTTGACATTTTTTGTTTTTCATAAACTTCATTGGCCAGAAAGAG TAAGTAACTTCAAATTGAAAGTTGAAACTGAAAAATACTAGGTTTTGAATGCTGGAATTGTTTACAGTCACTTTGGGTTT CCCTGATGAGATTTTATCAAGAAATCTGAACATTACATTCTGTATGATTGTATGAATTTTAGATTTTATTGTTTTAGTAA TTTGATTCTCAAAGCTGCATAATAAATGTCTTCTATCATTAATTCCTTTTCCTCTGCATCTACAAGAACCTGTCCACCTT TACAGAAATTTTGTTTGTGTGCGAAGATCCTGAAAATTAATATTCTTCATTCTTAGTTGACATTGGAAGTCCTGCTGCTG ACTACCAGCCAGAATGGGGTTCGGCGAGCTTTCTGATCGATTTTCTTCGGCCGACGGCCTCTGAAGGACCTTCATGGTTC AGTTTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATATAGTGGCCACATGCTTGTTGCTGTGCTCACAGCTAT GGCTTGGACAGTAAGATTTGAAGTTCATTTCGATCAACACTGCAATGTCTTATCATCTCGCTTTTTGCATTTAATTTAAA GTAGGAGTTTAGTTCTTGACTGTGATATCTTAAAAATGGCTGCAGGAAGCTTATGGAGGTTTCAGTTCAGCTCTTATATG GCTTTTCGTAGCGCACAGTGCCCAGAGAGAAGTGCGAGAACGCCATCATTACTCTGTAGACTGCATTGTAGCCATCTATG TGGGGATCCTCTTGTGGAAGATGACAGGTTTTATCTGGTCACAAAAAGATGCATCCAGAGATAGGAATCTGTCTAAACTT GAGAAGATTCAAAGTAGGCTCGTCCAGGCTGCAAAGGACTCTGACATTGAGGAAGTGAGGGAGCTTCTCAAAGAGATTGA ATTAAGCAGTGAAGAGAGCAAGAAACAGACTTCAATAAAATATTCAAAGTTATTTAGCTCTGCCACCATTGTCTTTGCAC TGACCATAGTTATTCTGGCTTTCACATTGACAAGTGATGGATGA
CDS sequence (LotjaGi5g1v0290200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTGGCAGGCGCCGCCGGCGAGAAACGCCGGCTTAGGCGTCGCCGCCATGTCCTACGTGGCCGTTGACTACCTCCG CCACCTCTCACCAACATGGCACTCGCGTCTGCAACCGGCGTTGTGGACCCTCCTCGCCCTCGCCGCCGTGGCTCGAGTCC CTTCCTACCGGCACTGGTCGGCGGAGTTTCGTGCCGCTATTCCTTTCCTCGCCTCCATGCTCTTCATGCTCGCCGCTCTC CTCTTTGAAGCAATCTCCGTTCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCGGAATACGCCACCTCTTCCAGA CACTGGTCAATGGTTTCTCCTGGCATTAAATGAGAAACTTCCTAGTGTAATTGTTGAGATATTAAGAGCACGCATTATTG GATTGCACCATTTCTTGATGTTGTTTATGATGTTGGCGTTCTCTGTGCTATTTGACTCTGTAAGAGCTCCTGGACTTGGA CTAGGTGCTAGATATATGTTTACCATGGCAATTGGCCGCCTTCTCCGTGCCATAAGTTTTCCATCTACCATTCTGCCATC AGCCCGTCCTTGGTGTGCAAGTTCTCGGTTTAGAGTTCCGTCATATCCTCATCGTTGGGCTCAAAAATATTATGTTCCCT ATGCTTCAGATCATAATGCTATCAACCAGCTGATAAAGCTAGATAAAGCTTATGTTGACATTGGAAGTCCTGCTGCTGAC TACCAGCCAGAATGGGGTTCGGCGAGCTTTCTGATCGATTTTCTTCGGCCGACGGCCTCTGAAGGACCTTCATGGTTCAG TTTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATATAGTGGCCACATGCTTGTTGCTGTGCTCACAGCTATGG CTTGGACAGAAGCTTATGGAGGTTTCAGTTCAGCTCTTATATGGCTTTTCGTAGCGCACAGTGCCCAGAGAGAAGTGCGA GAACGCCATCATTACTCTGTAGACTGCATTGTAGCCATCTATGTGGGGATCCTCTTGTGGAAGATGACAGGTTTTATCTG GTCACAAAAAGATGCATCCAGAGATAGGAATCTGTCTAAACTTGAGAAGATTCAAAGTAGGCTCGTCCAGGCTGCAAAGG ACTCTGACATTGAGGAAGTGAGGGAGCTTCTCAAAGAGATTGAATTAAGCAGTGAAGAGAGCAAGAAACAGACTTCAATA AAATATTCAAAGTTATTTAGCTCTGCCACCATTGTCTTTGCACTGACCATAGTTATTCTGGCTTTCACATTGACAAGTGA TGGATGA
Protein sequence (LotjaGi5g1v0290200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRWQAPPARNAGLGVAAMSYVAVDYLRHLSPTWHSRLQPALWTLLALAAVARVPSYRHWSAEFRAAIPFLASMLFMLAAL LFEAISVRSVTAVLGLDWHRNTPPLPDTGQWFLLALNEKLPSVIVEILRARIIGLHHFLMLFMMLAFSVLFDSVRAPGLG LGARYMFTMAIGRLLRAISFPSTILPSARPWCASSRFRVPSYPHRWAQKYYVPYASDHNAINQLIKLDKAYVDIGSPAAD YQPEWGSASFLIDFLRPTASEGPSWFSLLKKAGGGCNDLLYSGHMLVAVLTAMAWTEAYGGFSSALIWLFVAHSAQREVR ERHHYSVDCIVAIYVGILLWKMTGFIWSQKDASRDRNLSKLEKIQSRLVQAAKDSDIEEVRELLKEIELSSEESKKQTSI KYSKLFSSATIVFALTIVILAFTLTSDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 35 | 35 | - | – | |
PANTHER | 10 | 428 | 419 | 1.1E-201 | – | |
PANTHER | 10 | 428 | 419 | 1.1E-201 | – | |
Phobius | 36 | 53 | 18 | - | – | |
Phobius | 54 | 64 | 11 | - | – | |
Phobius | 65 | 85 | 21 | - | – | |
TMHMM | 65 | 87 | 23 | - | – | |
Phobius | 86 | 131 | 46 | - | – | |
TMHMM | 132 | 151 | 20 | - | – | |
Phobius | 132 | 151 | 20 | - | – | |
Phobius | 152 | 285 | 134 | - | – | |
Pfam | 275 | 342 | 68 | 7.9E-14 | ||
Phobius | 286 | 311 | 26 | - | – | |
TMHMM | 288 | 310 | 23 | - | – | |
Phobius | 312 | 322 | 11 | - | – | |
Phobius | 323 | 340 | 18 | - | – | |
TMHMM | 325 | 347 | 23 | - | – | |
Phobius | 341 | 404 | 64 | - | – | |
Coils | 377 | 397 | 21 | - | – | |
TMHMM | 405 | 424 | 20 | - | – | |
Phobius | 405 | 424 | 20 | - | – | |
Phobius | 425 | 428 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0290200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…