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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0291900 |
| Transcript ID | LotjaGi5g1v0291900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT4G23365.1 carboxyl-terminal peptidase; Swiss-Prot: sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr|B9N9S3|B9N9S3_POPTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0291900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60896424..60898426) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGATTCAAGTTTATAGATGGCTGCTACTCTAGTAATGTGGTTTTGTTCATTTTATGTGGCGATTTCTCTCATTTTCT GTCTTCATGGAGTTGATGGAAGTTTGGAGTCAAACATCACTCATCCAAAGACTATCAAGGTATACACTAACTTTGATTCA TAGAGTTCAGCGCAAACAAATTAAAATCCTTTCATTTAATAAAAAATTTCATGTGTTTTGTGAAATTTTTAAAAAAATGC AGACCGAATATGGAGACATCTACGATTGCGTGGACCTATACAAGCAACCCGCCTTTCAACATCCTTTACTCAAGGATCAT AAAATCAAGGCTTTTCCTGAGCAAATTGAAGATTCCAACAATTTAAGTTATGGATTGAAGGAGGGATGTCCACTAGGAAC AGTTCCCATAAGGAGAATAACAAAGGAGGAACAATTACTAGCTGAAGACATGTTCACACAGCAATTTCAACCATCTGCGA CAACCTTTCAAAACAACAAGCAACAAAGTAGGGTGAGCATTCAAAACTAGTTTCTTTTTTTCCTTTCTGAAAAGTAAATA GAGTTTGCATATATAAATGATTTTCTTGTAACATTTTTTGGAACTGATTAAAATTCATTAAGCGGAAACGATATATGTTT CAGTTTTCAGGAATCGTAGCAAGACCCGTAAACCGCAAGTATGGTGAAGCTTTAGCATATATGAGCACACATAACCCATC AGTTGGGAATGGACAACTAAGTGGTTCTGTCATATCTGCTGAATGTGATGTTGGTGGTTTTGATACCGTACGAGCTGGAT GGATGGTACATGTTCAAAAATTACCTTGGCACTCTTTAAAATTATTATTGAAGATATATAAATTAATTAGAATGCATGGA TAATAATCTTGTCCAAATATCAAATTAATTAATTATATATGGAGCATATTTTGGTTTGGTGCCACAGGTATATCCAGATC TCTATAGAGGAGACAAGCGTACTCGATTTTTCACTGCTTGGGGTGTATGTTATCTTCCCTTTCTCAACCCTTAATTATCT TCTATCATCAAGTAGCTATATTTATTTCCTCTATTTATAATTTTGCTCAATTGTATGATATTTTAAAGATGAAATAAATA TTTTGGATGAAGTGTAATACTATATATTTATCTCTTAGGTGATGAGAGTGTAAGTTAAGAAATAAGCGGGGAGTGAAGTT TAATTTAAACTTCTTTAGGGGATGAAAGGGTGAAAGGGTAATTTACTCCAATGTTTAATAAGACACTTACTTCATTTTAA ATTTTTGTCGATTATTTAGGCAAGCGATATATATAAGGGAACACAAACAGGTTGCTTCAATACTTACTGTCCTGGCTTTG TTCAAATAAATCCGAAGTTACCACTTGATTTTATCATCAACCAACTCTCGGTCACTGGAGGGGCATATTCTTACATCAAG CTCCACATTACATTGGTGAGTCTTTTATTGTGATCCTAACATTGATTCATCAATTATTTATTACAAATGTTGTATTTCTC ATACTAGAATTGCTTGCATGCAGCACCTAGACGGTTGGTATTTAACTCATACCGAAGACAATTTTTTAATTGGGTATTGG CCTCTTGCATTATTCAATTGCTTAAGAGATGGTGCTAAGGTGTTAAGTTGGGGAGGGTGGGTGTCTAGTGTGACACAAAA TTTGCCAATGATGGGAGACGGTCTTCTAGGGAATATTGGCAGCGTGTTCAGGCAAGTTTTATCTGATGTCAAACCAAATT TGATGATTACACAAAGTAATTGCTACAAGGCAGGATTTAACCCCGCCAAGGGTAGTTATTGGGGTCAGAGTTTTTGGTAT GGGGGTAATGGTGGAGATTTAAGGAAATGCCCACTTTAGTGAGGTGAATCACAACTTTGTATGGAAATATATAATAATGT TTTTTTTGTTATTTGTGCTCGGGGTCCCTAACTATAGTCAGGAATCGGAATATGTCCCTAAATTATTTTTTAATGTTTTC CAT
CDS sequence (LotjaGi5g1v0291900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTACTCTAGTAATGTGGTTTTGTTCATTTTATGTGGCGATTTCTCTCATTTTCTGTCTTCATGGAGTTGATGG AAGTTTGGAGTCAAACATCACTCATCCAAAGACTATCAAGACCGAATATGGAGACATCTACGATTGCGTGGACCTATACA AGCAACCCGCCTTTCAACATCCTTTACTCAAGGATCATAAAATCAAGGCTTTTCCTGAGCAAATTGAAGATTCCAACAAT TTAAGTTATGGATTGAAGGAGGGATGTCCACTAGGAACAGTTCCCATAAGGAGAATAACAAAGGAGGAACAATTACTAGC TGAAGACATGTTCACACAGCAATTTCAACCATCTGCGACAACCTTTCAAAACAACAAGCAACAAAGTAGGTTTTCAGGAA TCGTAGCAAGACCCGTAAACCGCAAGTATGGTGAAGCTTTAGCATATATGAGCACACATAACCCATCAGTTGGGAATGGA CAACTAAGTGGTTCTGTCATATCTGCTGAATGTGATGTTGGTGGTTTTGATACCGTACGAGCTGGATGGATGGTATATCC AGATCTCTATAGAGGAGACAAGCGTACTCGATTTTTCACTGCTTGGGGTGCAAGCGATATATATAAGGGAACACAAACAG GTTGCTTCAATACTTACTGTCCTGGCTTTGTTCAAATAAATCCGAAGTTACCACTTGATTTTATCATCAACCAACTCTCG GTCACTGGAGGGGCATATTCTTACATCAAGCTCCACATTACATTGCACCTAGACGGTTGGTATTTAACTCATACCGAAGA CAATTTTTTAATTGGGTATTGGCCTCTTGCATTATTCAATTGCTTAAGAGATGGTGCTAAGGTGTTAAGTTGGGGAGGGT GGGTGTCTAGTGTGACACAAAATTTGCCAATGATGGGAGACGGTCTTCTAGGGAATATTGGCAGCGTGTTCAGGCAAGTT TTATCTGATGTCAAACCAAATTTGATGATTACACAAAGTAATTGCTACAAGGCAGGATTTAACCCCGCCAAGGGTAGTTA TTGGGGTCAGAGTTTTTGGTATGGGGGTAATGGTGGAGATTTAAGGAAATGCCCACTTTAG
Protein sequence (LotjaGi5g1v0291900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATLVMWFCSFYVAISLIFCLHGVDGSLESNITHPKTIKTEYGDIYDCVDLYKQPAFQHPLLKDHKIKAFPEQIEDSNN LSYGLKEGCPLGTVPIRRITKEEQLLAEDMFTQQFQPSATTFQNNKQQSRFSGIVARPVNRKYGEALAYMSTHNPSVGNG QLSGSVISAECDVGGFDTVRAGWMVYPDLYRGDKRTRFFTAWGASDIYKGTQTGCFNTYCPGFVQINPKLPLDFIINQLS VTGGAYSYIKLHITLHLDGWYLTHTEDNFLIGYWPLALFNCLRDGAKVLSWGGWVSSVTQNLPMMGDGLLGNIGSVFRQV LSDVKPNLMITQSNCYKAGFNPAKGSYWGQSFWYGGNGGDLRKCPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 22 | 20 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 366 | 339 | - | – | |
| PANTHER | 31 | 358 | 328 | 2.7E-64 | – | |
| Pfam | 38 | 118 | 81 | 5.4E-19 | ||
| Pfam | 150 | 356 | 207 | 2.0E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0291900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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