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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0294500 |
| Transcript ID | LotjaGi5g1v0294500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat protein-like; TAIR: AT3G49180.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5ZLL7|WDR91_CHICK WD repeat-containing protein 91; TrEMBL-Plants: tr|A0A0R0I5Q8|A0A0R0I5Q8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0294500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61193200..61194942) extracted from Lotus japonicus Gifu genome v1.2.
GCATCAACTCCAGTATCTAGAAATGCAACCATATATTGTGGCACCGAAATTTTGTCGCTTGACTGGGAATGTAAATCAGA CCGCTTGGTATGTGAATTGATTTATCAAGGAGATTGAGAGATTGAAATTATTCAGTTTTATTCATTATATGAGACTGTAA ATTCAAATGATAAAGCTGTTCCTTTTGATAAAAGCTTCTAATAGGTACATCTGATGGGTGCATTAAAGCTTGGAATGTGG ATGCAAAGAGAGTTGTTTGTGACCTTAACACAACAGAAGAATTTCCAAGGTATTTCCTAATCATATATTGTTAGGTTTCT CTATTCATCATTTTTTAACTGACACGTGTGGTTTTACAGTGTGTTGGACATAAAGTGCAGTCCCGTTGAACCTATTTTCG TGTCTGCAGCAGCTTCTAGAGGGTATTCACTAAAATTTTAAATATTGAATTCTTTATTGTAGTAGTAAATTGGTTTAATT TGGTGATTCAATCCTCTGTTTTCATACAATGCTAGTCCAATTATCATATATAAATTTTTCTGTTTGGATTTTGGACATAC GAATTAAACTACAGTTAAATACCATTGGTCAAGGTATCTGGCCTTTTATTATGCTCTCAATGGACATCCTTTCTATTGTT TATTTTTTGTTAATTTACACTGTTAACACATTTTAGCAAGGAATTCTGAGGACCATGTTGTCTGTACAGGGCTGGTTCCA ACTATCCTCACAACCTGGGTTTCGCTTCACTAACTGTGTGGAACATGAAGACGTGGAAAGCCATGGTATGTGCTTCTTTG AATAGAATGTTTATGTTAATGTTGTTTTATGGCTATGTTTAATTTTGAATTTCATAAAGACAGTCCTTCCTCTTGGAGAA GATCCACCAGCAATTACTTCTCTATGCTTCAATCACAATGGGAAGATTTTAGCAGCATCTGCTGTGGATGGAATGATTCA CATGTTTGGTATCCTTAATTTCATTTATTCGACTACTTCTCTATGTTAATATATTTCGTAATTCACCTGTTGCTGGAATT GCTGACTTCCATCATAGCGCGTAGCTTGTATTTAAGAAGTCATAACTGCCCTTGCTGGAATTGCTAATTTGATGCTTTTA TTGTGCTTTCTCGAGGTTCCTAATGAATATTGGGATCAGATATTTGGTGTTCGTGTGTATTTTTATATCATATGTGAAAG ATTTTTTACGTGAAAGTGAGAGGAACAAATCTTGACCATTAGATCTAACCATAAATGGTTAAGATTAAAACATGAACGCA TGTGACCATTAAATAATTTTTAATTTTGACCATCCATGTGTCTAAATTTATCCCCCTCACGGCCTCACCCCATTCTCGCT AGATACAACCCTATATATGTGTGTGTATAGAGAACCTATTGTGAATGTATAAGCTGGGGGTCACATAGTTTGACAATCAT GTCTTCCTTATCAATCCAAAGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCTGCACATGATTCTTCTATCAGTTCA ATTTTTTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTCTGATGGGAAGGCAAGTACTGCTAATTTAATGTTATT CTTGCTTGTAAAGTGGATGCCACACTTCATACTAATTGGTTCTTTGTTATCAGATTTTCGAGTGGAGTTTGCAAAATCAA GGTCAAATCTTGTGGTCAAGAGACTGTAGCAGGTATATTTATAGTTTGGCACCTTATGATTAG
CDS sequence (LotjaGi5g1v0294500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACGTGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTCTATGCTTCAATCACAA TGGGAAGATTTTAGCAGCATCTGCTGTGGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCT GGCCTGCACATGATTCTTCTATCAGTTCAATTTTTTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTCTGATGGG AAGATTTTCGAGTGGAGTTTGCAAAATCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGCAGGTATATTTATAGTTTGGC ACCTTATGATTAG
Protein sequence (LotjaGi5g1v0294500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSIFFGPDETSIFSLGSDG KIFEWSLQNQGQILWSRDCSRYIYSLAPYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 104 | 104 | 9.2E-72 | – | |
| Gene3D | 1 | 107 | 107 | 8.0E-17 | ||
| SMART | 3 | 44 | 42 | 0.0032 | ||
| SUPERFAMILY | 3 | 107 | 105 | 7.14E-19 | ||
| ProSiteProfiles | 12 | 95 | 84 | 14.424 | ||
| Pfam | 15 | 67 | 53 | 7.5E-6 | ||
| SMART | 47 | 86 | 40 | 0.68 | ||
| ProSiteProfiles | 54 | 89 | 36 | 9.773 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0294500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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