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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0295300 |
| Transcript ID | LotjaGi5g1v0295300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|A0A0B2PUB6|A0A0B2PUB6_GLYSO Reticulon-like protein; Found in the gene: LotjaGi5g1v0295300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61265526..61272726) extracted from Lotus japonicus Gifu genome v1.2.
CTCATATTACAATACCACTCTAATAATTCCAAATTGCTTGCTAGAGTAATTTTATAACAAAACAATTTGACACTTTAAAA AAAGAATGCAAGCACAGAAGGTTTCCGTTATTCATTCCCAACCACCATTCCGAACTTGAGGCTCGGACTCAAAACGAACC CGCCAAATATTACTCCCTCTCTCTCTCTCTAACAACTGACCCTAATCTCTGTGACTCGTTCCTTCCTTCCATTCTTCCAT TTCGCATCCATGGCGTCAGGGGAACCAGAATCGTTCGTCGACAAGATTGAAGAAAAGTTTCACGACAACAACTCCGATTC CGATTCGTATTCTGATTCCGACGACGATCACAACAAGAAGAAGAAGCCACCGGTTCCGTCCTCCAAACCCAATGTCTACC GCCTCTTCGGCCGCGATCGCCCCGTTCACAAGGTCTTAGGCGCTGGAAAACGTAACTAACTCCTCTCTCTCTCTCTCTAT AACCGCTTCCATCTGCATTGATTCACAATAACTCATCACGCGCGTTTTGATTTTTCATTACCCCGTAGATTTGTCTGAGT TTCAAGCGTTGTTTAATGTGATCTGAGCTAGGCGAATCGATTTATTTTTAGAACGGAGAGAAAATACTTCCAGACTACCG CCAGTGACATGCTGGGAGGCGAATCGATTTATTTGGATGAATGATAATTGAAGTGTTTTTACCTAATTGCATTTCAATTT ATTGTTATGATTGTTGTGGAGATGTTCTATTAATCTCATTTTGATGTATCGATTTGATTATTTTCCGCGCGGCTTAAATG TCAATTGTTACTGGATTAGATGTTTGATTTAGATGAATTTTGGTTTGTTATTGCTAATTGCATCGTCGTTGTGGTTGTAA TCATGTTAGTTTGCAATGTATTGGAGTTTGGTTTGTTATTTGATAATGTATTATGATTGTTTATCACAACAAGGTGTAGT AATTGGATAGGAAGCTAGGACGGTCTTTGTTCGCAAAATAGTTGTGAAAACGTGAAACATTTTCAAATTGATAATGTTGC TATTTGAGGTTGGTGTTGTTAACGATAACCTACTGTATTGTTGGAAGCTAGATATAACTGAAATGGTAAAGGGGTTTTGA ATAGTTCACCCACTTCATGTAGAACAATTTCCTTCTTTGTGATAATTCACCCTTCCTGTTGCATTTGCACATGTTCCCTT GCAGCTGCTGATATTCTGCTATGGAGGAGCAAGAGAAGTACAGCAACTGTACTCGGTGCCGGCACTGCCTTGTGGATTTT CTTTGAGTTGCTGGAATATCACCTCATAACTTTTGTTTGCCATTTATCCATTTTGTCTCTGGCTGGCCTGTTCTTGTGGT CCAATGCATCTGTTTTTATCCACAAGTAAGCAGTTGGAAATTCTCATTCTGATCCTTTTCGTTGAGTTTATAGTTAAAAT TAAGGACTTCACTTAATGTGAAATATTGGTATGGAATAGTGAATACCAGAATTACTCTTCATAGCAAATTGTTGCATCTT CTATCTTAATCATGGGCGGACCTACCACAGGGCTTGGTAGGTCCAATGCCCTGGCTCAAAGAAAAAAAAATGAAAATTTC TTTGGACTAGGTAGGTTTTTTTGACAAAAAAAAAAATAGAGAAAAGACAAATTTATAAGGAAAGACAAAGTTTAGGGACT TAATCATAAAATTTGCCTAGGCTTCCTAAAATTTCTAGTTCCGCCACTGATCTTAATATATGCAATTTCTTATGATCATG ACATTTTTCTCAACCAGGTCTCCACTGCACATCCCGCATATTGCGATTCCTGAGGATTGTGCGCTTCAGGTTGCTTCTGC TATAAGAGTTGAAATTAACCAAGCCTTTGTTGTTTTGCGGCAGATCGGAACTGGAAGAGATATAAAGAAGTTCCTTAGCG TAAGCTGATTCCTCCCTTCACCCCTGTGTAAAGCTATAGTTATATGCTGTAACCGTCTTGCTTTTTCCCATTGAACTCAA CCCGAATTCATGTCCATTCATACCATTTTCAAACTTTCATTTTTTACCATGCTATATATAGTCTAGTGGTTAGATTTGTC CTTCATACAAACTTTATACTAACACTGACACTAGCCCTGGGACTAATAACATGTTTCGATCAACTCTTCTTTTCATAATC AATTATAGCATCTAGAAATTACTAACAATAATTTTCTGTGAAAATAGATTCTGACTTTATAATTAATTGTTGTGTTTATG TCCTGCTACCAGGTTATTGGTATCCTGTGGGTTGTCTCAGTTGTTGGCAATTGGTTCAACTTCTTGACCTTGTTTTACAT ATGTAAGCATACTTCTATTATTCTCATTGTCATGTGTTTCTACTGTGTTTTATGCTAAACGGTATTTCTTAACACTGAAT CCATTTGGTGAGATACAGTCTTTGTGTCACTGTTCACATTGCCACTGATATATGAGAAATACGAAGACCAGGTTGATGCA CTAGCTGAGAAGGCAATGATTGAGATCAAGAAGCAGTATGCAGTTCTTGACGCTAAGGTTTTGAGCCAGATACCGATACC GGGGTTGAAAAAGGATTAGAATCAGGTTTACTGTTAACAGTAGATGGTTGTTCTGTTCTGATGTCAAATTTCTAAGTCTT ACCGTAACTCATTCTTCCTCTATCAATTATTTGAGGAAAATTTAGTTTGAGGAATAAAAAGTCCACCTAAAATTAAATGT TAGAGCATCAACATTTTGTTGTATAAATTGACTTGATGAACGTGTAACCCTGTCATCTAAGTGAGTGCTTGCCAAGTTTA ATTTTCACCCTCTTTTTCCTATTTGTTGTTTTTGGCTTTGGTGCTTTTATTCCATTGTTGGTCATTAAAAGAAATTCCTT ACCTGGAAATCGATGACTAAACGAAATTTAAATATTTGATGAATTTGAATGAGTTTAAAGTGCGTCCTAGTTAGCGTGTT TACATTTCTGCTAATAATAATTAAAAGCACATTCAAGGAAAATTTATACTCACAGTACATAATGGATTACAGAAAAAATC ATTTTAAGTGAACTTAAGCCTGGTTTTTACCACTCATTCTATTTGTGTGTGAATACTAGTTGATTGCAATGTAAGTTGAC TTTAATCTCAATTCATTAAAATAGTAACATTCATTTTTTATCTCAAAATAAGTGTTAATATTCTTTTGCACGGGTGTTAA CATGGATCCGACCTTAACATTCATCATTTCATGGACGTTGCTAATTGTTTCAGAGAAGGTTTGACAAAATTGAGTCATAG AGTGGATCCCATGTTGGATTCGGAACGTTGCCTGATGAACTCACGTGATCGCCGAACTTGCGTCGGATTTTCCTACAATA TATAATAATTCTTTTTTTTTGTTACAAGAGAAAGGATACAATATATAATAATACATGACTTTGAATTATTTTCTTTTTTT CAAACTCTTAAAAAAAATTGGTAAATTTTCAAACTCTTAATTTGCTACTAATTCTACAAAAAAATGAACAATATATAATT TTATTGTGATTCAAAATGTTCATTGTATTTTATTTTGTTCCTTCGTGCAAGTTGTGTAAAAAGTACACAAGTTTTCAAAG ACAAACTACATATTTATAATACTTTACGGCAAATTAAGATCATATGCATTTTTTAATTACATTTCGGCTCAGTAATACGA TAAATTCACATTTATAAAAATGTAGGGATAAATAAATTTAAATATAAACTAGTGGAATTTTTTCCCTATAAAAAGAGAGG TAATTTGAAGTACCTCATTTTTTTAGTAATGAATTGGGTTTGGGTTGTTGAGGTGATGAGTGCCAGGTTTGAACCCACAA CATGTTAAAAGCATTGGATATCCCAAGCCACTCATGCCGCAGGTTTTGGCAAGATAATGTAGCAAACTAATTTTTATAAA AAACTCTATAACGAAATTATGCATATATCCAATAAAAAGAGGATTTTCTTTTCATTCTTTCACGGGTGTAAATATATTTG TTGAGTATGACTCATAGGTAATGTTAAGGAACCCCACAATACAATTTAGGGGTATAATTTTAATAGGTGCTTGCTGTGGT ACCTTAATTTAAATGAGGGTACAGTAACTTAAATGATGTAAAACCATTTTATCTCCAAATCTTTTTACTTCTAAAAGCCT CTAGACCCATCATTCATGAGTATTTTAGTAGATTATTTCATTATCTTGTTATTCGCCAGACACCAATTTCCATAACTCAC CCTTATTATGGTCAATAACTCTCTTGTTCTTACATCGCATACATTTCCACTTCCACCACTAGATTCTGATTTAAAAATAG CTGGAACAACGGACATGATGTCTAAATTCCAACAAAAGTTAAAAGGTCTAATTTTCTCTCTTTTTTTGCCATTCAATTTC ATAATTTCATCTAGTTGGGGTACCGTACCCAAAAGAATTTCAGAGTACCACGGAATTTACCATTCTAATATGAATCATTA GTATCTTGTATATGCTTATAACACTAAAATCCTATGATATTTTGAATCCTGATCAAATAAATGGAACTATAATGGCTCTA TACTCGCAGTCCACAGCCCTAGAAATTTAACGGAACTATGTGAGTAAAGCTTTTGTGTGTTCCTTGATCTACTATTTGTT TACTCATTATTGAAAACCTTGAGGGTAGGTTTATAATTCAATTATTGAATGCACTAGAACCACACGTTGGATCAGCTATC TGTCTTCTTCAGACAAAGTAGCTTTATTGAAATAAAGTCAACAAGTTAGCTTCAATTGGTCTCGCACTCTCGCCATGGTT TTCCTCAGTTGTCTACCTTTTAGCGTCATTTTTCAGATCTGAACTTTGGTAGAGATATTTTCCTTCCTTATCAGAGTTCC AGAACACGCTTTCTATTTCTCACATACCCACCATTATAGATCTTCACCATTTTGTCTCTGGCTGGCTTGTTCTTGTTGTC CAACGCATCTGTTTTTATCAACAAGTAAGCTGTTGGAAATTCTCATTCTGATCCTTTTCCTTTAGTTCACAGTGAAAATA TAAGGACTTCTCTTAATGTGAAATATTTGTATGGTATAGTGAATACCAAAATTACTCTTTGTAGCAAATTGTTGCTTCTT CTATCTTAATTTATGCAATTTCATATGATCATGACATTTTTCACAACCAGGGTCTCCACTGCACATCCCACATATTGTGA TTCCTGAGGATTGTGCTCTTCAGGTTGCTTCTGCTATAAGAGTTGAAATTAACCAAGCCTTTGTTGTTTTGCGGCAAATC GGAACTGGAAGAGATATAAAGAAGTTCCGTAGCGTAAGCTGATTCCTCCCTTCACCTTGTGTAAAGCTATAGTTATATGC TGAAACCGTATTGCTTTTTCCCATTGAACTCCAATGTAATTGAGTTTCAACCTGAATTCATATCAAGTCATATTATATTC AATTTTTCATTTGTGTACCATGCTTTATATATTTTACTAATTTTAGTGGTTACATTTGTCCTTCATACAAATTTTATACT AACACTGACACTAGCAGTGGGACTAATAGCATGTTTCAATCAGTTCTGTTTCATAATCAATTATAGCATCTAGAAGTTAC TAACATGAAATTTTCCCTAAAATTGGTTCTGACTTAAAATTAATTGTAGAAAGATTTTTAAACATGGACTAACATGTTTA TGTTCTGTTACCAGGTTATTGGTGTCCTGTGGGTTGTCTCAGTTGTTGGCAATTGGTTTAACTTCTTGACCTTGTTTTAC ATATGTAAGCATACTTCTATTATTCTCATATTCTCATGTGTTTCTACTGTGTTTTATGCTAAACGGTATTTCTTAACTTA ACACTGAATCCATTTGGTGAGATACAGTCTTTGTGTCATTGTTCACATTGCCACTGATATATGAGAAATACGAAGACCAG GTTGATGCACTAGCTGAGAAGGCAATGATTGAGATCAAGAAGCAGTATGCAGTTCTTGACACTAAGGTTTTGAGCCAGAT ACCGATACCGGGGTTGAAAAAGGATTAGAATCAGGATTACTGTTAACAGTATATGGCTGTTCTGTTATGTTCTGATATCA AATTTCTAATTCATACCGCAACTCATTCTTCCTCTTTGAGGAAAATTGAGTTTGAGGAATAAAAGTCCACCTAGTCCAAA TGTTAGAGCATCAACATTTTGGTGTATAAATTGACTTGATGAACGTGTACCCCTGTCATCAAAGTGGATAAAATATGAAA AATAATAAAAATTAATGAGTTATATGATAAGTGATGGGAAATAAAATATAAAAGTAGAGGTAACTTTGAAGTAGTACCTC ATTTTTGAGGTAATGAATTGAGTTTTGTTGATGAGAAGGTGAGGGTGTGTGCTAGGTTTGAACCCAAAACATGTTAGAAG CATGCGATAACCCAAGCCACTTGTGCTGCTGGATTTGGCAAGATTATGGAGCAAACTAATTACTACTATAACGAAATCCT GCATATACATCTAATTTTGCATATACATATAATACTGAACCCATATGTGAATGAGGTGCTTTAAGGTGTTGTCTAAGGTG CAATAGTGAGTGGGTGATGCACAAGTGGCATTCATGTTTGGGCCAATAGAATCACACCAGCTATGGAAAGAGATGAGAAG TCTGGAAGGTCATGGTATTTGTAATTTTGAATATTTTATCTGTTTCATTTTAGATTGGCTTTAGATCCAATTTTAGTTTT CTTTTTCAGGTGTTTTTTAAATTTCTAGATCATTGCTGTTAAAGGTAAAGACTAAGGCTCTGTTTGGGATAGCGTTTTTT TGCTCAAACGCACGTTGCGTTCACCCAAACGCCGTTCCGAAGCTTTCCGTCCCCGTTTGGATGAGCGTTTGCAACAACGC AAAAACGCTAAAAGTCGCCAAAACAGCGTTCTACTGGAATCGATAATTTGGAGCGTTCACTACAACAAACAGTGCATTTT GCGGCGGTTGCAGAAGCCCTTTTGCGGCGGTTTTAACCGCCGCTAAATGCATCTTGCGGCGGTTTCCAAACCGCCTGGTT TACAGCCGTCGCTACGCTTTCTGCGGCGGTTAGTTACAACCGCTGGAACAACCGCCGCAAAACACTCATTTGAATTTTGC GGCGGTTGGAACCGCCGCTGGTAACGAGTTCAAGGTAAAAAAAAATAGTGTCACTCTGCGGCGGTTTCAACCGCCGCAAA T
CDS sequence (LotjaGi5g1v0295300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAGGGGAACCAGAATCGTTCGTCGACAAGATTGAAGAAAAGTTTCACGACAACAACTCCGATTCCGATTCGTA TTCTGATTCCGACGACGATCACAACAAGAAGAAGAAGCCACCGGTTCCGTCCTCCAAACCCAATGTCTACCGCCTCTTCG GCCGCGATCGCCCCGTTCACAAGGTCTTAGGCGCTGGAAAACCTGCTGATATTCTGCTATGGAGGAGCAAGAGAAGTACA GCAACTGTACTCGGTGCCGGCACTGCCTTGTGGATTTTCTTTGAGTTGCTGGAATATCACCTCATAACTTTTGTTTGCCA TTTATCCATTTTGTCTCTGGCTGGCCTGTTCTTGTGGTCCAATGCATCTGTTTTTATCCACAAGTCTCCACTGCACATCC CGCATATTGCGATTCCTGAGGATTGTGCGCTTCAGGTTGCTTCTGCTATAAGAGTTGAAATTAACCAAGCCTTTGTTGTT TTGCGGCAGATCGGAACTGGAAGAGATATAAAGAAGTTCCTTAGCGTTATTGGTATCCTGTGGGTTGTCTCAGTTGTTGG CAATTGGTTCAACTTCTTGACCTTGTTTTACATATTCTTTGTGTCACTGTTCACATTGCCACTGATATATGAGAAATACG AAGACCAGGTTGATGCACTAGCTGAGAAGGCAATGATTGAGATCAAGAAGCAGTATGCAGTTCTTGACGCTAAGGTTTTG AGCCAGATACCGATACCGGGGTTGAAAAAGGATTAG
Protein sequence (LotjaGi5g1v0295300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGEPESFVDKIEEKFHDNNSDSDSYSDSDDDHNKKKKPPVPSSKPNVYRLFGRDRPVHKVLGAGKPADILLWRSKRST ATVLGAGTALWIFFELLEYHLITFVCHLSILSLAGLFLWSNASVFIHKSPLHIPHIAIPEDCALQVASAIRVEINQAFVV LRQIGTGRDIKKFLSVIGILWVVSVVGNWFNFLTLFYIFFVSLFTLPLIYEKYEDQVDALAEKAMIEIKKQYAVLDAKVL SQIPIPGLKKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 1 | 251 | 251 | 1.6E-142 | – | |
| PANTHER | 1 | 251 | 251 | 1.6E-142 | – | |
| Phobius | 1 | 77 | 77 | - | – | |
| MobiDBLite | 8 | 40 | 33 | - | – | |
| ProSiteProfiles | 68 | 251 | 184 | 45.854 | ||
| Pfam | 69 | 224 | 156 | 4.9E-52 | ||
| Phobius | 78 | 94 | 17 | - | – | |
| Phobius | 95 | 99 | 5 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 100 | 119 | 20 | - | – | |
| Phobius | 120 | 172 | 53 | - | – | |
| Phobius | 173 | 190 | 18 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 191 | 195 | 5 | - | – | |
| Phobius | 196 | 213 | 18 | - | – | |
| Phobius | 214 | 251 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0295300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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