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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0296700 |
| Transcript ID | LotjaGi5g1v0296700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-carotene hydroxylase; TAIR: AT4G25700.1 beta-hydroxylase 1; Swiss-Prot: sp|Q9SZZ8|BCH1_ARATH Beta-carotene 3-hydroxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SJ50|I3SJ50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0296700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61360788..61364142) extracted from Lotus japonicus Gifu genome v1.2.
CTGTCATCGTACTTTGCTCCAACATCAACCCTTGGTCATTCTCCAAACTACGTAAATGCCCAAATGTTGCATAAAAATTA AAATACACTACCAAAAAGCAATGGCTTTGCTGTAATTTAGGGAAAATGTCAATGGCAGATGTCTCAAAGAACATCCTACA GCTTTAATTGTTCCACGAGTTCTGTTTTGTATTGAAATTGAAATAAACCGACCACTAGTCGATCACCTCAATTGTGTGGA CAAAAGAATTCTGGTTTATATGCAACCCCTCTCTTTCAACTCTCCCCACATCAACAACAACAACACTCTTTGCTTCAACT CCAACCTCAATCCACTACTCCTCTATGGCGGCAGGACTCACCGCCGCCACAACCTTAAACCCCTCCAGTCTTCTCCAAAC CTCAACCCTTTTCCCTAAGCTAACCCCAACATTGTTCTTCACCCCCTTAACCTTAAGAACTTCCCATCACAGAACAGTCC TTCAAACCCGGAGAAGAATCAGGGGCTTCACCGTGTGTATCCTTACAGAGGGTCCAAAACCAGGCATACAGATCAAAACA GAGGAAGAAGAGGAACCACCTCCCAACATAGTGATTCCTCAAATCATGTCAGCACGTGTGGCAGAGAAATTGGCAAGAAA AAAGTCAGAGAGGTTTACTTACCTTGTTGCAGCTGTTATGTCTAGCCTTGGTGTCACTTCTATGGCTATCTTGGCAGTTT ACTATAGATTCTCATGGCAAATGGAGGTAGCTACAAAAAATCCTCTAAATTTATGCTCATTTTCTTTATGTATCTAAGTA TTATGACATTAATTTGTGTATGAATGTTGGATTGGATTGGTGTATAGGGTGGACAAATTCCTATGTCTGAAATGTTTGGC ACATTTGCCTTATCAGTGGGAGCTGCAGTAAGTCCTGACCCTTTTCTCAATTCAGCATTGTGAAGCTCTTGAATGTGAAA TTTGGTAACTTTGGGTGCTAAATCCAACTGGGTATGTCTGATTTTCAGGTGGGCATGGAGTTTTGGGCTAGATGGGCTCA CAAAGCTCTCTGGCATGCTTCCTTGTGGCACATGCATGAAGTATGCTTCCAATTCATCAATTTCCCTTTTCTTCAAAATT GAACCTTATCATCAAATCAACCAATTCATTCAATCAAAACATGAATTTGAATCGTTTTGCAGTCACACCATCGACCAAGA GAAGGACCGTTCGAGCTGAACGATGTTTTTGCTATAATCAACGCTGTTCCTGCCATTGCTCTTCTCTCCTATGGTTTTTT TCACAAGGGATTGGTTCCTGGACTCTGTTTTGGTGCTGTAAGTGTATCTTTCATAATCTACTTTTTAATCAATTAATCCC TTAATTAACGGTTTCATAGGGATCTGTTAATTGTAATTAAGGATTAAGAATGATAATGATTTGACTGTAATGCCCCTGGT GATTCTCTTTATTGACATCATTAACTTCGAGCAGGGTCTAGGAATCACAGTGTTTGGGATCGCCTATATGTTTGTCCATG ATGGATTGGTCCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTTCTGCTCATCAA GTAATTGTTATTTTAACCTTAATCAATTGCTTAAATAATAGTTTACTTTTGATTAGTACTTGATCAATGTGGCGTGTACG TGTTTGTTTCTGTTTCTACTGGACTAGGATTTGATCTGAGATTACTTTGATTTTGTTGTCTGTTTTCAGCTACACCATTC GGACAAATTCAACGGGGTGCCATATGGGCTGTTTTTGGGACCAATGGTGAGTCATCACATTCATATTTCTTCTCCTTAGG TTTGGTTTCATTAAAATAACCCTTTTAGATGCTAAGTTAATATTTTATTATTGGTTAAGTGTTCATGAAAAAACCTAGAT ACAAAGTCAGTAGGTAGTCGCTAAGCATTAGAATTCTCAGCAAATGAACACACTTCATTAAGTATGGAGGACCCTCTATA TAGTCGAGGTCTCCCTAGATTACAAATGTAGAAAATCAAACCATTACAAAATAAGAGGGAGAGAATCAAGTGATTATATT AATATGAAAAACATAATAAAGTGAGCTAAGATTCTAGCGCAGTATGAGTGACTTAGTCGGCCTAATACCCTAGTAAGCCA CAACCCTCCAAGACTTGGAGTCAAGCAAGTGTTGGCGACAAAGCCTTACAATCCGGCCCAGAAGTGGTTTCATCTTAGAC CGCATTTGGGTTATGTTGTCAGCCTACGTAGTCCTAACTGTCTACTTCACTTGGTATTTGTAAATTTAAAAGATTTTACT AGTAGTGGAATGAAATAGGACCTTATAATTTATGAAAGTTTTTTGACATATTTTTTATAATTTAACAAAATTTAATTATT ATTCTAAGAATTCTATTGACATTTTTTAACTATATGTCGTATTTATTTAAAAAAACCAATGAAGTTGTTTTTTGAAACTA AACCAATAAAGTTAGAAGAATTAAAAAAGAATACTAACTTTCACTTTATTGAAGTTTCTTCTGCATATAGTTTTGTTGAA AGTAGGTTGTCACATTTAAATTTCATTGAATTATTGTGAGATAAGATGAGCGTGTGTGTGTGTGTGTGTGTTAGATCTAA ATTTTTTAATAAGCGTTGTTTAAGGTTTGGATATTTCTTGTGGTGCAGGAACTTGAAGAAGTAGGAGGGCTAGAAGAGCT AGAGAAGGAAATAAGTAGGAGAAAAAAATCATATACTGGTTCATGAGAAACTGACTAGCATTAAATTTAAAGGTGTCTGA AAGAATGTGTGTAGAGAACTATACAACAAATGAATGAAATGATTTGATTCTTTTTTGCGCTTACACAGTTTTTGATGTTA ATTATATAGGGATATTTAGCTAACAGAACAACAGGTTCAAAACTATGTAGATCAACCGATATTGGTGGTGATCTTTCATT CTTCATTTTTATTTTTCCTTCGTACAAACATGCTCACTCATGTGGATACATTAATGCCATATAAAGTCCCTAAACCCTCA GAATTCAACCAAGAATCCAAGTGACTTTTTAGTGGAGATTTGTTTTTAATCAGCGTTTTATTCTTTATGAAAAGTGAAAA CAATTAGGGATGAGAACCGTCAGTTTCGGGCTCGTTTAGCCCAGCCCAATCCGACCAAAACTGACATGGGCACTGTGCAC CCATATTCGGCCCAAATATTGGGATCAATTTGTTCAGGTGAGATGGACATCATATGGGTTAGCACGGATTGGGGCAACCA AAATTTCTAGTCTTCATAATTTATGAGTTTTGATTATAAAAAATCTGTAATTTTCAATTGACTATTATCTTGGGC
CDS sequence (LotjaGi5g1v0296700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAGGACTCACCGCCGCCACAACCTTAAACCCCTCCAGTCTTCTCCAAACCTCAACCCTTTTCCCTAAGCTAAC CCCAACATTGTTCTTCACCCCCTTAACCTTAAGAACTTCCCATCACAGAACAGTCCTTCAAACCCGGAGAAGAATCAGGG GCTTCACCGTGTGTATCCTTACAGAGGGTCCAAAACCAGGCATACAGATCAAAACAGAGGAAGAAGAGGAACCACCTCCC AACATAGTGATTCCTCAAATCATGTCAGCACGTGTGGCAGAGAAATTGGCAAGAAAAAAGTCAGAGAGGTTTACTTACCT TGTTGCAGCTGTTATGTCTAGCCTTGGTGTCACTTCTATGGCTATCTTGGCAGTTTACTATAGATTCTCATGGCAAATGG AGGGTGGACAAATTCCTATGTCTGAAATGTTTGGCACATTTGCCTTATCAGTGGGAGCTGCAGTGGGCATGGAGTTTTGG GCTAGATGGGCTCACAAAGCTCTCTGGCATGCTTCCTTGTGGCACATGCATGAATCACACCATCGACCAAGAGAAGGACC GTTCGAGCTGAACGATGTTTTTGCTATAATCAACGCTGTTCCTGCCATTGCTCTTCTCTCCTATGGTTTTTTTCACAAGG GATTGGTTCCTGGACTCTGTTTTGGTGCTGGTCTAGGAATCACAGTGTTTGGGATCGCCTATATGTTTGTCCATGATGGA TTGGTCCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTTCTGCTCATCAACTACA CCATTCGGACAAATTCAACGGGGTGCCATATGGGCTGTTTTTGGGACCAATGGAACTTGAAGAAGTAGGAGGGCTAGAAG AGCTAGAGAAGGAAATAAGTAGGAGAAAAAAATCATATACTGGTTCATGA
Protein sequence (LotjaGi5g1v0296700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGLTAATTLNPSSLLQTSTLFPKLTPTLFFTPLTLRTSHHRTVLQTRRRIRGFTVCILTEGPKPGIQIKTEEEEEPPP NIVIPQIMSARVAEKLARKKSERFTYLVAAVMSSLGVTSMAILAVYYRFSWQMEGGQIPMSEMFGTFALSVGAAVGMEFW ARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGIAYMFVHDG LVHKRFPVGPIANVPYFRRVASAHQLHHSDKFNGVPYGLFLGPMELEEVGGLEELEKEISRRKKSYTGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 103 | 103 | - | – | |
| PANTHER | 1 | 306 | 306 | 5.4E-166 | – | |
| PANTHER | 1 | 306 | 306 | 5.4E-166 | – | |
| Phobius | 104 | 127 | 24 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 128 | 146 | 19 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 147 | 169 | 23 | - | – | |
| Pfam | 153 | 281 | 129 | 3.9E-13 | ||
| Phobius | 170 | 189 | 20 | - | – | |
| Phobius | 190 | 210 | 21 | - | – | |
| TMHMM | 194 | 211 | 18 | - | – | |
| Phobius | 211 | 215 | 5 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 216 | 237 | 22 | - | – | |
| Phobius | 238 | 309 | 72 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0296700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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