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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0297500 |
| Transcript ID | LotjaGi5g1v0297500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT2G19630.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9ZUN0|FB113_ARATH Putative F-box protein At2g19630; TrEMBL-Plants: tr|A0A0R0K107|A0A0R0K107_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0297500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61436440..61437859) extracted from Lotus japonicus Gifu genome v1.2.
GTTATGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCATGTCTCGCTCAACGGCATACGCCTCT TTTTGGAAGAGTTTTACTAAAGAATACCGTGTGCATGTCTCGCTCAACGGCATACGCCTCTTTTTGGAAGAGTTTCTCTT TATTGAGAACTCTGCAATATTAGTTCAAATATTTTGATTATATACAATGAAATATATTGCTTGCACTCAATCATTCTGGC GACGACTCTATCTTCTTTCACCAGATTTTTTATCATAATTTATATTGTTTTCATAAGATCTTGTGTAAAGTTAGATAAGA TCTTTTACCTATTAAGTTTATATATCTTCACGCATTGCACGAGTAACTTCACCTTATGTTTGTTTGTTGCTACACATTCA TAGCCGCTGCACCATGCAACTCGAGGAGAAGCGACTCTGTCTTGAGCAGCTATTGATTCCTGAGGAACTCATCACGGAGA TCCTGTTACGTCTCCTGGTGAAATCCCTTATGCGGTTCAAGTTGGTGAGCAAATCATTCAACTCTCTCATCTCTAGCCCC CACTTTGTGAAGCTGCACCTTCATCGATGCTTCCTTCCAAACGCCAACCCGCTCATAATATTCTGTCCTCCAGATGATGA CGTCGACGAAATCGAATATTTGCCACTCAAATCCTTACTCAAAACCCCTCCTTCAACCATCTTGGACGAATTGCAGTACT TGCCCGTCAATTGGGAAGGCCCGCACATTGTAGTAGGTTCTTGCAATGACAATAATTGGAGACACACTGGTTGTTGTTTC CCATCCAATCTTACCACTCTTATTGGCGATTACAAAGGAGTTCACTTGAATGGAACTCTTAACTGGTTAGCCATTCTCAA AATTTATGAGGATAATTATGATTTTGAACTTCATAAGTATGATTTTGAGTGGGACAATGGCTCATGCCTGATTACTTCCT TTGATTTGAATAAGGAGGAGTTTGTGAGGTTGTTGTTGCCTGTTATGCCCCACAAGTTCAGTGCTCCACATCTTGGGGTT CTGGGTGAATGTCTCTGTGTTTCTGTCGATGACGGGCTAGACAATTTTGTGATTTGGCAGATGAAGGAGTTTGGAGATGA TGGATCTTGGATTAAATTGCTCAGCATTAATTATCATCAAGACATAAAACCTCGTGGCTTGCCGTTTCCCTTTGGGTTTG CTAAGTACATGTTTGACAATGGTGATGTCCTCATGCTGCCAGAAAAGTACCTCTACAACAAGAGAGATAATAGATTGAGT CCTCTTAAATTTATAAATAATTTGTATTTATCCAGTGCCACAATTTGCTGTGAAAGCTTGATTTCACCTCCTTAAAATTG ATGGCAGGACAACATTGAAAGATTTTGATCTCAAATATGAATTTCATATTTTAATCAGAA
CDS sequence (LotjaGi5g1v0297500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACTCGAGGAGAAGCGACTCTGTCTTGAGCAGCTATTGATTCCTGAGGAACTCATCACGGAGATCCTGTTACGTCT CCTGGTGAAATCCCTTATGCGGTTCAAGTTGGTGAGCAAATCATTCAACTCTCTCATCTCTAGCCCCCACTTTGTGAAGC TGCACCTTCATCGATGCTTCCTTCCAAACGCCAACCCGCTCATAATATTCTGTCCTCCAGATGATGACGTCGACGAAATC GAATATTTGCCACTCAAATCCTTACTCAAAACCCCTCCTTCAACCATCTTGGACGAATTGCAGTACTTGCCCGTCAATTG GGAAGGCCCGCACATTGTAGTAGGTTCTTGCAATGACAATAATTGGAGACACACTGGTTGTTGTTTCCCATCCAATCTTA CCACTCTTATTGGCGATTACAAAGGAGTTCACTTGAATGGAACTCTTAACTGGTTAGCCATTCTCAAAATTTATGAGGAT AATTATGATTTTGAACTTCATAAGTATGATTTTGAGTGGGACAATGGCTCATGCCTGATTACTTCCTTTGATTTGAATAA GGAGGAGTTTGTGAGGTTGTTGTTGCCTGTTATGCCCCACAAGTTCAGTGCTCCACATCTTGGGGTTCTGGGTGAATGTC TCTGTGTTTCTGTCGATGACGGGCTAGACAATTTTGTGATTTGGCAGATGAAGGAGTTTGGAGATGATGGATCTTGGATT AAATTGCTCAGCATTAATTATCATCAAGACATAAAACCTCGTGGCTTGCCGTTTCCCTTTGGGTTTGCTAAGTACATGTT TGACAATGGTGATGTCCTCATGCTGCCAGAAAAGTACCTCTACAACAAGAGAGATAATAGATTGAGTCCTCTTAAATTTA TAAATAATTTGTATTTATCCAGTGCCACAATTTGCTGTGAAAGCTTGATTTCACCTCCTTAA
Protein sequence (LotjaGi5g1v0297500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLEEKRLCLEQLLIPEELITEILLRLLVKSLMRFKLVSKSFNSLISSPHFVKLHLHRCFLPNANPLIIFCPPDDDVDEI EYLPLKSLLKTPPSTILDELQYLPVNWEGPHIVVGSCNDNNWRHTGCCFPSNLTTLIGDYKGVHLNGTLNWLAILKIYED NYDFELHKYDFEWDNGSCLITSFDLNKEEFVRLLLPVMPHKFSAPHLGVLGECLCVSVDDGLDNFVIWQMKEFGDDGSWI KLLSINYHQDIKPRGLPFPFGFAKYMFDNGDVLMLPEKYLYNKRDNRLSPLKFINNLYLSSATICCESLISPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 124 | 123 | 5.1E-6 | – | |
| ProSiteProfiles | 9 | 54 | 46 | 9.789 | ||
| PANTHER | 13 | 117 | 105 | 1.5E-24 | – | |
| PANTHER | 13 | 117 | 105 | 1.5E-24 | – | |
| SMART | 15 | 55 | 41 | 7.2E-7 | ||
| Pfam | 15 | 53 | 39 | 4.6E-5 | ||
| SUPERFAMILY | 15 | 61 | 47 | 1.18E-10 | ||
| PANTHER | 111 | 259 | 149 | 1.5E-24 | – | |
| PANTHER | 111 | 259 | 149 | 1.5E-24 | – | |
| Pfam | 142 | 269 | 128 | 3.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0297500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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