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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0297900 |
| Transcript ID | LotjaGi5g1v0297900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT3G49070.2 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070; TrEMBL-Plants: tr|A0A072VNT1|A0A072VNT1_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi5g1v0297900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61478284..61480469) extracted from Lotus japonicus Gifu genome v1.2.
CTAGAACTCACTTCCAACACGCCAAACCAAGTTCACCACCACCCTTCACGTACACTACAAGATGTTACAAGATTGTATTA TCTTCTTAAGTCTTACTTACAAGCAAAAGCAAAAACTAAAATTATTAAATATCGAAAAAAATTCTCTTGCAGAGAGAACA GTACCTTCTTGACAATTTCTCTGAGTTCCTTTATCGACAAGAAGATTTCAATTCAAGTGCAAAAGCTTCATCCGTTAATA TCTCAGAAAAGGTTGGCCTATTGTTCAATTTCAATTCGGAAAAATATCATATTATTGTTGACACTCTTCTCAAGCTTGTT CCTTTTAACAATTTCCATGATTCATTATATGATCTTCTGATTTTTCTCTTGCATTTTTTATCTGCAGAATCAATTTATTA TCTTGAAACAGAAATGAGGAACAAAATGATTCGGCGGATGAAAAAGTTGTTTTCGTGTCCTGGTAAATATTGAACATATA TAGAGGCTTTATGATTAGTACTATCAAAATGATAAAATGGCCAACCTTGGTACAGCTTGAAGATATACTTATGGATATAA GAATGAAATTTCACATGTTAATAAGTCACTCTTCGCTCAAGGAAGATGATTGTTCTGCTTTTGTAAAACAGAGCATTTGT TTTTTATACCATTTATTTATTAATTAATCTCATACTAAGTATATAAAATCATTTATCAAATAAAAATATTAGTATACTTC CCAAAGTAATAGTTAATGTTGTTTTAAACTTTTTGAAGTAATAAAGAAATAAATTTTTAATATTTAAAAAATAAAAAGAA TATTATTAGGGGGTTGCTTCCATACCCTCTAAAAATGAGATGATTCATTATTCTTCAGTATATTGTTTAAAATATCATGA CTAAATTGTAAATTATACAAAATATTATAGAAGATAACATGGCATATCAATGCAAAATATACAAAACCTCTTCGTTTTAA AGGGTACTAGAGAAATAGTATATTATTTAATGGTAATGTATGTATTACATGATGAATTTCTTTGGTGATTCAGGGTGTAA GACTAATTCTCCAAATCATCAAACATGTGTGGACGTGCAAGAGGAATATGCAAATGCATTTCGTACCGAGTCATATATTG ATTTTTGGACACGTGTAAATGCATATTCCAACAATGAGTCCTATGCTTGTTTATCGAGAGAGTCCACCACATCGACTCGA CTTCCCTCTTATCGTTTGTTTGCAGAACACCTATTGGATCCAGATCAACCCACGGTTATTCGAATTTTATCTGAAGTCCA ATACCAGCCCAAGATCCATTCTCTCCTATTAGATTATTTTGCCCACACTGCAAATGCTTCTCTACTATGCAGTCACCTAT TAAAAGACATTGATCGTGTACGTTTCAAGTATACATCATTTAAGACCATTCTTCATTCTGTTCCAACCCATCAAAATCCT TCTTCATTAGTAATGAGCCATTTAATTGAATTTTCCAACTCCTTAAACCCATTTGCAACATCTAGCCCATCTCCATGTCA AGTTCAGGCCACCCAAGCCCGTTGCTCCATATTACAAAAGCAATTCGAGTCAAGCCGAGACACGGCCCAAGCCAAGCTCC GATTGATAGCTAGGTTAAAACGTGGTTCAACTTGTTTTCTCGTGATAGTTATAACGGCTTCGCTTGTTGTACTTGTGGCG GCTCATGGATTTGCACTACTGGTGGCTATGCCAGCACTGGCTTCAATGAATTTGGCTTCGGAAAGAAAGTTGGCTATGGT GGCGGCTCAACTTGACACAGCCGCCAAAGGAACTTATATATTGAACAAGGACATGGAGACAACGGTCCGGCTTGTGGCTC GACTAAATGATGAGCTTGAGCACATGAGGACTATGGTTAAGTTTTGGCTTGAGAGGAAAAATGACAAAATTCAACCTGAT GGTGAAGTGGCACTCCTGTTGAAAAAAAATCAATGTAATTTTAGTGATCAATTAGATGAATTGGAGGAGCATTTGTATTT GTGTTTCATGACTATTAATAGGGCTAGATACCTTGTGCTGAACCAGATCACTACTTCAGCTTGATCCCATGATACCATTT TATATCAATGATTAACTAATAAGTTATTTTACATTTGTTGATCATGTAAACTTGTTTTTTTTAATGGATGTGGTCATGTT GTGGTACTTCATTTATTATAATGAGA
CDS sequence (LotjaGi5g1v0297900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTACATGATGAATTTCTTTGGTGATTCAGGGTGTAAGACTAATTCTCCAAATCATCAAACATGTGTGGACGTGCA AGAGGAATATGCAAATGCATTTCGTACCGAGTCATATATTGATTTTTGGACACGTGTAAATGCATATTCCAACAATGAGT CCTATGCTTGTTTATCGAGAGAGTCCACCACATCGACTCGACTTCCCTCTTATCGTTTGTTTGCAGAACACCTATTGGAT CCAGATCAACCCACGGTTATTCGAATTTTATCTGAAGTCCAATACCAGCCCAAGATCCATTCTCTCCTATTAGATTATTT TGCCCACACTGCAAATGCTTCTCTACTATGCAGTCACCTATTAAAAGACATTGATCGTGTACGTTTCAAGTATACATCAT TTAAGACCATTCTTCATTCTGTTCCAACCCATCAAAATCCTTCTTCATTAGTAATGAGCCATTTAATTGAATTTTCCAAC TCCTTAAACCCATTTGCAACATCTAGCCCATCTCCATGTCAAGTTCAGGCCACCCAAGCCCGTTGCTCCATATTACAAAA GCAATTCGAGTCAAGCCGAGACACGGCCCAAGCCAAGCTCCGATTGATAGCTAGGTTAAAACGTGGTTCAACTTGTTTTC TCGTGATAGTTATAACGGCTTCGCTTGTTGTACTTGTGGCGGCTCATGGATTTGCACTACTGGTGGCTATGCCAGCACTG GCTTCAATGAATTTGGCTTCGGAAAGAAAGTTGGCTATGGTGGCGGCTCAACTTGACACAGCCGCCAAAGGAACTTATAT ATTGAACAAGGACATGGAGACAACGGTCCGGCTTGTGGCTCGACTAAATGATGAGCTTGAGCACATGAGGACTATGGTTA AGTTTTGGCTTGAGAGGAAAAATGACAAAATTCAACCTGATGGTGAAGTGGCACTCCTGTTGAAAAAAAATCAATGTAAT TTTAGTGATCAATTAGATGAATTGGAGGAGCATTTGTATTTGTGTTTCATGACTATTAATAGGGCTAGATACCTTGTGCT GAACCAGATCACTACTTCAGCTTGA
Protein sequence (LotjaGi5g1v0297900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYYMMNFFGDSGCKTNSPNHQTCVDVQEEYANAFRTESYIDFWTRVNAYSNNESYACLSRESTTSTRLPSYRLFAEHLLD PDQPTVIRILSEVQYQPKIHSLLLDYFAHTANASLLCSHLLKDIDRVRFKYTSFKTILHSVPTHQNPSSLVMSHLIEFSN SLNPFATSSPSPCQVQATQARCSILQKQFESSRDTAQAKLRLIARLKRGSTCFLVIVITASLVVLVAAHGFALLVAMPAL ASMNLASERKLAMVAAQLDTAAKGTYILNKDMETTVRLVARLNDELEHMRTMVKFWLERKNDKIQPDGEVALLLKKNQCN FSDQLDELEEHLYLCFMTINRARYLVLNQITTSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 212 | 212 | - | – | |
| PANTHER | 15 | 352 | 338 | 5.0E-150 | – | |
| PANTHER | 15 | 352 | 338 | 5.0E-150 | ||
| Pfam | 197 | 350 | 154 | 8.2E-8 | ||
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 213 | 241 | 29 | - | – | |
| Phobius | 242 | 354 | 113 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0297900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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