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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0297900 |
| Transcript ID | LotjaGi5g1v0297900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT3G49070.2 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070; TrEMBL-Plants: tr|A0A072VNT1|A0A072VNT1_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi5g1v0297900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61478284..61480469) extracted from Lotus japonicus Gifu genome v1.2.
CTAGAACTCACTTCCAACACGCCAAACCAAGTTCACCACCACCCTTCACGTACACTACAAGATGTTACAAGATTGTATTA TCTTCTTAAGTCTTACTTACAAGCAAAAGCAAAAACTAAAATTATTAAATATCGAAAAAAATTCTCTTGCAGAGAGAACA GTACCTTCTTGACAATTTCTCTGAGTTCCTTTATCGACAAGAAGATTTCAATTCAAGTGCAAAAGCTTCATCCGTTAATA TCTCAGAAAAGGTTGGCCTATTGTTCAATTTCAATTCGGAAAAATATCATATTATTGTTGACACTCTTCTCAAGCTTGTT CCTTTTAACAATTTCCATGATTCATTATATGATCTTCTGATTTTTCTCTTGCATTTTTTATCTGCAGAATCAATTTATTA TCTTGAAACAGAAATGAGGAACAAAATGATTCGGCGGATGAAAAAGTTGTTTTCGTGTCCTGGTAAATATTGAACATATA TAGAGGCTTTATGATTAGTACTATCAAAATGATAAAATGGCCAACCTTGGTACAGCTTGAAGATATACTTATGGATATAA GAATGAAATTTCACATGTTAATAAGTCACTCTTCGCTCAAGGAAGATGATTGTTCTGCTTTTGTAAAACAGAGCATTTGT TTTTTATACCATTTATTTATTAATTAATCTCATACTAAGTATATAAAATCATTTATCAAATAAAAATATTAGTATACTTC CCAAAGTAATAGTTAATGTTGTTTTAAACTTTTTGAAGTAATAAAGAAATAAATTTTTAATATTTAAAAAATAAAAAGAA TATTATTAGGGGGTTGCTTCCATACCCTCTAAAAATGAGATGATTCATTATTCTTCAGTATATTGTTTAAAATATCATGA CTAAATTGTAAATTATACAAAATATTATAGAAGATAACATGGCATATCAATGCAAAATATACAAAACCTCTTCGTTTTAA AGGGTACTAGAGAAATAGTATATTATTTAATGGTAATGTATGTATTACATGATGAATTTCTTTGGTGATTCAGGGTGTAA GACTAATTCTCCAAATCATCAAACATGTGTGGACGTGCAAGAGGAATATGCAAATGCATTTCGTACCGAGTCATATATTG ATTTTTGGACACGTGTAAATGCATATTCCAACAATGAGTCCTATGCTTGTTTATCGAGAGAGTCCACCACATCGACTCGA CTTCCCTCTTATCGTTTGTTTGCAGAACACCTATTGGATCCAGATCAACCCACGGTTATTCGAATTTTATCTGAAGTCCA ATACCAGCCCAAGATCCATTCTCTCCTATTAGATTATTTTGCCCACACTGCAAATGCTTCTCTACTATGCAGTCACCTAT TAAAAGACATTGATCGTGTACGTTTCAAGTATACATCATTTAAGACCATTCTTCATTCTGTTCCAACCCATCAAAATCCT TCTTCATTAGTAATGAGCCATTTAATTGAATTTTCCAACTCCTTAAACCCATTTGCAACATCTAGCCCATCTCCATGTCA AGTTCAGGCCACCCAAGCCCGTTGCTCCATATTACAAAAGCAATTCGAGTCAAGCCGAGACACGGCCCAAGCCAAGCTCC GATTGATAGCTAGGTTAAAACGTGGTTCAACTTGTTTTCTCGTGATAGTTATAACGGCTTCGCTTGTTGTACTTGTGGCG GCTCATGGATTTGCACTACTGGTGGCTATGCCAGCACTGGCTTCAATGAATTTGGCTTCGGAAAGAAAGTTGGCTATGGT GGCGGCTCAACTTGACACAGCCGCCAAAGGAACTTATATATTGAACAAGGACATGGAGACAACGGTCCGGCTTGTGGCTC GACTAAATGATGAGCTTGAGCACATGAGGACTATGGTTAAGTTTTGGCTTGAGAGGAAAAATGACAAAATTCAACCTGAT GGTGAAGTGGCACTCCTGTTGAAAAAAAATCAATGTAATTTTAGTGATCAATTAGATGAATTGGAGGAGCATTTGTATTT GTGTTTCATGACTATTAATAGGGCTAGATACCTTGTGCTGAACCAGATCACTACTTCAGCTTGATCCCATGATACCATTT TATATCAATGATTAACTAATAAGTTATTTTACATTTGTTGATCATGTAAACTTGTTTTTTTTAATGGATGTGGTCATGTT GTGGTACTTCATTTATTATAATGAGA
CDS sequence (LotjaGi5g1v0297900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAACAAAATGATTCGGCGGATGAAAAAGTTGTTTTCGTGTCCTGGGTGTAAGACTAATTCTCCAAATCATCAAAC ATGTGTGGACGTGCAAGAGGAATATGCAAATGCATTTCGTACCGAGTCATATATTGATTTTTGGACACGTGTAAATGCAT ATTCCAACAATGAGTCCTATGCTTGTTTATCGAGAGAGTCCACCACATCGACTCGACTTCCCTCTTATCGTTTGTTTGCA GAACACCTATTGGATCCAGATCAACCCACGGTTATTCGAATTTTATCTGAAGTCCAATACCAGCCCAAGATCCATTCTCT CCTATTAGATTATTTTGCCCACACTGCAAATGCTTCTCTACTATGCAGTCACCTATTAAAAGACATTGATCGTGTACGTT TCAAGTATACATCATTTAAGACCATTCTTCATTCTGTTCCAACCCATCAAAATCCTTCTTCATTAGTAATGAGCCATTTA ATTGAATTTTCCAACTCCTTAAACCCATTTGCAACATCTAGCCCATCTCCATGTCAAGTTCAGGCCACCCAAGCCCGTTG CTCCATATTACAAAAGCAATTCGAGTCAAGCCGAGACACGGCCCAAGCCAAGCTCCGATTGATAGCTAGGTTAAAACGTG GTTCAACTTGTTTTCTCGTGATAGTTATAACGGCTTCGCTTGTTGTACTTGTGGCGGCTCATGGATTTGCACTACTGGTG GCTATGCCAGCACTGGCTTCAATGAATTTGGCTTCGGAAAGAAAGTTGGCTATGGTGGCGGCTCAACTTGACACAGCCGC CAAAGGAACTTATATATTGAACAAGGACATGGAGACAACGGTCCGGCTTGTGGCTCGACTAAATGATGAGCTTGAGCACA TGAGGACTATGGTTAAGTTTTGGCTTGAGAGGAAAAATGACAAAATTCAACCTGATGGTGAAGTGGCACTCCTGTTGAAA AAAAATCAATGTAATTTTAGTGATCAATTAGATGAATTGGAGGAGCATTTGTATTTGTGTTTCATGACTATTAATAGGGC TAGATACCTTGTGCTGAACCAGATCACTACTTCAGCTTGA
Protein sequence (LotjaGi5g1v0297900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNKMIRRMKKLFSCPGCKTNSPNHQTCVDVQEEYANAFRTESYIDFWTRVNAYSNNESYACLSRESTTSTRLPSYRLFA EHLLDPDQPTVIRILSEVQYQPKIHSLLLDYFAHTANASLLCSHLLKDIDRVRFKYTSFKTILHSVPTHQNPSSLVMSHL IEFSNSLNPFATSSPSPCQVQATQARCSILQKQFESSRDTAQAKLRLIARLKRGSTCFLVIVITASLVVLVAAHGFALLV AMPALASMNLASERKLAMVAAQLDTAAKGTYILNKDMETTVRLVARLNDELEHMRTMVKFWLERKNDKIQPDGEVALLLK KNQCNFSDQLDELEEHLYLCFMTINRARYLVLNQITTSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 357 | 357 | 3.8E-150 | – | |
| Phobius | 1 | 215 | 215 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 14 | 14 | - | – | |
| PANTHER | 1 | 357 | 357 | 3.8E-150 | ||
| Pfam | 203 | 355 | 153 | 8.4E-8 | ||
| Phobius | 216 | 245 | 30 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 246 | 359 | 114 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0297900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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