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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0298200 |
| Transcript ID | LotjaGi5g1v0298200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sec-independent protein translocase protein TatA; TAIR: AT5G52440.1 Bacterial sec-independent translocation protein mttA/Hcf106; Swiss-Prot: sp|Q94G16|TATB_PEA Sec-independent protein translocase protein TATB, chloroplastic; TrEMBL-Plants: tr|I3S6U9|I3S6U9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0298200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61498793..61503058) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTCATTGTAAATAAAGATAAGATTTTCTGAGAATATAAAACAAAAAAATTCCCTAAATTTATGAAGCCCAAATGATA GGTGAAACAAGTCTGCTTAGACCATTGGATTACAGATAGGATTGTTTGTGCTCCCAGGAATCAAGGGTCGAAGCAGAAGC AATCATCATTCGAATTCATCGAAGACACTGTCTTCAAAATGACACAATCGTTGGCAATGGTTTCTTCTACTGTGTTATGT CCTAAACTGGGGGCATGTGCAGTGTCACTGTCCCCCTCTGCAACTCCACACACAAAAATCCAACGTTTTCATCTCTCTTC ATGGTTATCTCCAATGGGTCGAAGCCTTTTCTCACCTTGGAATGGTTTAAAGCATCTGGGTATCTCAACTAAACCAAAAC CTCTTTTTCATATAGGTAACGATCAATTCTCATGTGGGTTTGTTTTCTCATATGGGGTTTCATGTTTGTTGAGCTCATTG TAGTTGTTTGCAGATAGAAAGGGTAGGTGTAAGGGTAAGCTGGTTTATGCTTCTCTCTTTGGAGTTGGAGCCCCTGAAGC CCTGGTTATTGGGGTCGTTGCTTTACTGGTTTTTGGTCCTAAGGGTCTTGCTGAGGTGAGTTTGTGTTTGTACCACTCTT GCTTTGGCTTCATTCTCAGTTTACAAGAATTATGAATGCCTTTGTCTCTGCAATTTTCGTTAGATGTTTGCTGTATGCGA ATTTGCAAATACTGGTTATTCGGATAGTTTAAAGGATCTTGGATGATTGTATATCTTGTTAAGACTTGAGTTTTCTATTC TAAAAGGTTAATATGTTGATCATTTTTTGATGAAGTGGTTTGGTACTTTGTCAAGGAACCATCCATCTAACAGTTTGAGT AATTAGGTGGAGGTCCAAGACTGGTTTTTATCTGAAAAATTCATAAAAGCATATCCTTGCAAGAAGTTTGTTTCTTTTTA ATGTAGCTCATCAGGGTGAATGTGTGTAATAGCATATAGTGGACTTGAAGAGTCCTGTTATTTCTTGTTTTGTAATTGGA GGTAAAAATGGGCTATTGCACCATACTTGTTAGGTAGAATGAGCATCAAGTTGGAAATTATTGGGCTACCTATCAGCCAT GGTTGGTGCCTTTGTTTCTTAAATAAAAATGTTAAAGTTACTCATTAGTTGCAGGCGGTTTACGTACGTAGAATGGTTGA GAAATGTATAAGAATACTGTATCAGATGATGAATTTTTCCCAAGTTCTGAGAATCCTTAATTTTTCATGCTAATCTTACT GGATATGTTACAACTTTGTGTTCAAACTCTAGCTAAGAGATAGGATATGGCTCCCTCTCTTTATGTTATTTACCAAATAA TATACAGTGAAACAATGCGAGATAATGTGTTGTTCCACATATTTGCTTGAGAGAATGTTTTAGGGAAGCTGTGTAAGTTG TCCTGTTATTCATGGTATGATAATCTCATAATCGTCCACATTCTCCGATGATTGTTAGTATTGAACAAGACTAACTTGAG ACAGTTTAAGCTGACTAGAGAGGAACCCTTGAGACTTAATGGATACATTACTTACAAATTTTGTGAAGTCGTTGTTGTTG CTGGTTGTAAATATTTCTTCTCTTTTTTTCTTTTCTTATCTACTGAGTCATTGAATGCAGGTTGCTCGAAATCTGGGAAA AACATTGCGTACATTTCAACCGACCATTAGAGAGCTTCAGGTTGGTGCAAAATACTTTAGACTAAATTGCTATGCTGATG CCACTTTCTTGATGCTTTGACTTTATTGAATGCCATTTTCCCCCTTTAGGATGTTTCAAGGGAATTTAAAAGTACACTTG AACGAGAGATTGGTCTCGATGACATTTCAAGTCCAACACAGAACCCATACAATTCCAATTTCCAAAACACCACATCAACT CCATCATCCACTGATAGTACAAAGAGTTCTCCGATTGCTGTTGACCCTGGTGAGTAATCTACTATCTATTTTCTTACTTG CTAAGCAGTTTATAAAATCTGGACTGGTTATTTATTCTTATACAACGAATGACTGATTATTTGTTTCACCTTTCCTGCAT GCATTTTCTTTTTCTGTTCATATGTTTCTATAGTTGCTTGTAAGAATAAGTACTCTTTTAACAAAAGAAAAAAGGAGCTT GCACTTACGTCTGAAATGGAACAATTAATAGGTCAATTGGTATCTCACAGGCCCTTACCAAGGTGCTATTGTTATGAGGT GGAGGTCCGATCCCACATACACCTATTTCCCACTCCCACTAGTGCATCCTACAACTGGAGTGGAAAGTGGAATAATAAAA GAAGTCATGCAACTAACGGATCTAAATTATGAAATTGAATCTTAATGATTTGATGAAAACTTCCAGAAACTTGATTGTGA ACTCTACTCAAGCTTATTTATCATTCGGATCCTCCCTTTGTTCAGTAGATCAGGTGAGGTATTCACACTGATTTGAGCTT TAGACTTGATGGATTCCCATGAATCATGATTCATGAAGTAAGAGCAGTTGTTTTATACATATTGATGTATAGGTTGTCTA GGTAGGTTTGAGATTATTTCCAACTAAGTATGTCTTAGGTAGCCAGAAGATAACAATCTTTTTTCCTTTGAGATTAAAGT TAGTAAATATAGACAAAGAAGCAAAGTATGTTTGTAAACTTCTATTATTCTGCTGATATTATTTTTGTATTGTTAGGTCA TTCTCTTTTATGAACTTGACATCACTAACAACTAGTTTAGTACTGTCATTAAAGAACTATCCCAAAAGTTTAAAATGTTG AGTAACGAAACATGAATGGTATGGACTCTAGACAACTTGTCATACGGGCTCTGATATCATGTCATGAACCAATTATCAAA ACAACTTAAGTTGTTAGGTGAAGACACATGAATGATTTTATATTATACTTCTAATGAGGATCAAAGTCCAAAATGCTGAG AAATAGTTCAACTTAAGATGTAATATTCTCATATATAGGTTTAATTGGTTAGCAATAATCCAAGGAGGTGAACTACTACT AGGTACAAGTTACGAGTTACAACGGCATAGTTCACTTGCTCAGAAATAGTTCAGAAGTTTCTTTTCTTAAAGGAAAGAAA CTGCACACTTTGGTAATAAAATCCGATACAGTTTTTAAAGAAATTTTACTGTTTGTTTGTCTTGATAGTTGATACCTCCC AGAACCGAATGGATCATAATGATATTACATAAACACAAGAGTTTTCTTTTTCTTCATATGCTGTGGCTGAAGACAAGTAC TACTAGATATCATGTACACCACTGTTATCAAATATTAATTACGGCATTTGATCACCCGCTTGGTTAAGAAATGATATTTG TTTCTGCCTAATAATGCAAGTTCCAAAATTGCCAACATACAAGCTTGATGACAAATACCAGAGTGAAATTATCTCTCATA ATGCAGATGGCACGCAAGATCCAAGTAGAGCATACAGCTCTGAAGAGTATCTTAAGATTACAGAGGAGCAGCTAAAGGCA TCTGCTGCACAACAGCAACAGGGACAGACACCCCCTCGTAAAGAAGGCGAGTTGGAACCTCAAATCCAGCCTCTTGGTTA GTCTTTTTGGTGGCAGTTTTCTCTGTTTTTACCCCACTTTCCATCTTTTTTACTTCACCATACTTACTTTGATATGGACA TATGGTTGTTCAGCTGCTAAGGAAACAGCTACTACTGTGTCACCGCCTCAGAAGCCAGAAAGTGAGACAATACCTCAGGA TTCATAGGGAGTAACTAGTAACTTGTCCAATTATCTGTTCAGTACCAGGAATGTGGGCACTACTATTAGCTTGATTGATG GGAAAATGAATGAGGGTCACACAATTTTGTTGCCTCCTTGTCACTTGAGTTGTGTAAAAAGTAAAGAAGAAAACTATTGA CATGTAGTGTTTTCTGAATTTATTGTAGTTATTAGTTGATGACTTACCAATGTTGATCATCTTCCACACACCCTGCCCCC TATAATAATTTAAATACTATTTAAGAAAAGAAAAATATGATCATATGCATTCAGAAAATGCTATGGCAGTAGTTGGATTC ATGAGTACCAGCAAGCAATTTATGGTAAGTTTTTATTGGTCATGAGATTTCACAATCAATAGTCGAAATTCATTATATAA TTGTCATTTAAACCTCTAGCATTCTCACCACCAAGCGCGTAGATCAATTGGTGCGGAGTTGCTCTACCTTAAGTACGGGT CTAGTGTTCGATTCCTTGTGAATGCG
CDS sequence (LotjaGi5g1v0298200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACAATCGTTGGCAATGGTTTCTTCTACTGTGTTATGTCCTAAACTGGGGGCATGTGCAGTGTCACTGTCCCCCTC TGCAACTCCACACACAAAAATCCAACGTTTTCATCTCTCTTCATGGTTATCTCCAATGGGTCGAAGCCTTTTCTCACCTT GGAATGGTTTAAAGCATCTGGGTATCTCAACTAAACCAAAACCTCTTTTTCATATAGATAGAAAGGGTAGGTGTAAGGGT AAGCTGGTTTATGCTTCTCTCTTTGGAGTTGGAGCCCCTGAAGCCCTGGTTATTGGGGTCGTTGCTTTACTGGTTTTTGG TCCTAAGGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTACATTTCAACCGACCATTAGAGAGCTTCAGG ATGTTTCAAGGGAATTTAAAAGTACACTTGAACGAGAGATTGGTCTCGATGACATTTCAAGTCCAACACAGAACCCATAC AATTCCAATTTCCAAAACACCACATCAACTCCATCATCCACTGATAGTACAAAGAGTTCTCCGATTGCTGTTGACCCTGA TGGCACGCAAGATCCAAGTAGAGCATACAGCTCTGAAGAGTATCTTAAGATTACAGAGGAGCAGCTAAAGGCATCTGCTG CACAACAGCAACAGGGACAGACACCCCCTCGTAAAGAAGGCGAGTTGGAACCTCAAATCCAGCCTCTTGCTGCTAAGGAA ACAGCTACTACTGTGTCACCGCCTCAGAAGCCAGAAAGTGAGACAATACCTCAGGATTCATAG
Protein sequence (LotjaGi5g1v0298200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQSLAMVSSTVLCPKLGACAVSLSPSATPHTKIQRFHLSSWLSPMGRSLFSPWNGLKHLGISTKPKPLFHIDRKGRCKG KLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSREFKSTLEREIGLDDISSPTQNPY NSNFQNTTSTPSSTDSTKSSPIAVDPDGTQDPSRAYSSEEYLKITEEQLKASAAQQQQGQTPPRKEGELEPQIQPLAAKE TATTVSPPQKPESETIPQDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 81 | 81 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 9 | 251 | 243 | 1.7E-96 | – | |
| PANTHER | 9 | 251 | 243 | 1.7E-96 | – | |
| Phobius | 82 | 106 | 25 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| TIGRFAM | 89 | 134 | 46 | 1.2E-15 | ||
| Pfam | 90 | 140 | 51 | 1.2E-23 | ||
| Phobius | 107 | 260 | 154 | - | – | |
| MobiDBLite | 146 | 260 | 115 | - | – | |
| MobiDBLite | 151 | 196 | 46 | - | – | |
| MobiDBLite | 209 | 223 | 15 | - | – | |
| MobiDBLite | 237 | 260 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Protein transport by the Tat complex | The process in which folded proteins are transported across cytoplasmic membranes of bacteria and membranes of organelles derived from bacteria (chloroplasts and mitochondria) by the TAT complex. |
Expression pattern of LotjaGi5g1v0298200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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