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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0303700 |
| Transcript ID | LotjaGi5g1v0303700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | IQ domain-containing protein; TAIR: AT5G62070.1 IQ-domain 23; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|V7BBY0|V7BBY0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0303700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62176102..62179676) extracted from Lotus japonicus Gifu genome v1.2.
GAGGTTGAAGCATAAACATTAAACAAAGTTCCATGTCCGACACTACTCTCTCTCAAGTGTCAAACTACAAAATCCAACTC CCACTTCTTCTTCTTCAGCTCACTTCTTCTCTCTCAGCTGAACTCATTTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCT CTCTCTCTCTCTCCTCTAACCTCTTCACCATTCACCAATGACATGACACATGGGCTTTCTCCGGCGACTCTTCGGCACCA AAAAATCCACTCCTCCCACCGACGGTTCCTCCTCCTCTTCCAAATCTCATAAGAAACGATGGAGCTTCATCAAACACACC ACCAAGTCACTCCCACCACCACCCACCGCCTACACCACCCACTTTGACTCTTCCTTCGACGCCAACAAACATGCAATCGC CGTCGCCGCCGCTACTGCCGCCGTCGCCGAGGCCGCTCTGGCCGCCGCCCACGCCGCCGCAGAGGTAGTCCGCCTCACAA ACAACACCGGTAGCAGCACCAGAACTAGACCCACCAAGGGTGTGACGCATGCTGGCCGGAGCCGGTTGCCGGTGGAGATC TCCGCCGTCAAGATACAGTCAGCGTTCCGTGGTTATCTGGTAAGTATAGTAGAATTCTTTTTATAATTATTGTTATAATT TTTCTTTTCTTTTTATATAATTATTGTTACTTTTCTTATCATGTGCTACATTTTTTTTTTATTTATTGCTTTAAGTTTTT ATATTGCACATGGATGAATTTTCAGTCAGAAACTAAGGAGAGTTTTTACTATGTTTAAGTTGAGTGTTTCATCACTCTGA TTCAATTTAATTTATGTGTGTTTGGAATAGAATTAGTGTGTGTTTTTTTGGTTAAATAGCTTAATAAAATGCTGTTCTGT TTTGGAATTTTTTGAGTGTGAGAGAATTGAAGAGAGGAAAATGAGGTTTGTGAATAGTACAAGGGAGCTAGCCCCACACA TTTGATGAGTTATGACTTATGATAGTTACCTTTACAGCGGGGAAACCAGAATGGGAATGGTATGCACCCAAAACAAGATC AAAAAGATAAGAAGTGGCCCTGTGACAACTCATGATCAAGGCATGGTCATGAACTCATGGTCCTGAGATTGGTTGGTAGG GTCTTGCTATTACTGAATGACAATGTAACAATTAGGAAGGAGAGTGATGAGCAAGTTTGTAACCACTAGTTTTGTTTTTG GCTGGTTATAGACAGAGTATTTGTGACCAGGTCGTTTTCTTGGCTTTGACACATCAAAAGGAAAGAAAAACCATTTCTTT GGGGAAAAAGAGGCTTTCCACCTCACTTTCATATAAATAGATATTCTAACTTTCACGTGAAAGGACTAACTCTGGTTAAG GACTTAAGGTTACCAATAGACTAATGTATTCATTTATTTGTGAAGATCACTTATTTCTTCTTTCTTTGGTAATTTAGCAG ATGCTGCATGGTATTTTATTTGTTCTCTTTCCTTATTACAATATAATATAATAAGAAATGCTTGTAAGTAATATTTTTCA ATGAATTTAAAAGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTG TGAGGAAGAAAACTGCAGATATGCTGAGACGCATGCAAACTTTGGTGCGATTGCAGACCCAAGCACGTGCAAGTCGTGCG CACTTGTCAGATAATACGCGCTCTTTCAAGCCTTCACTTTCTCATTATCCTGTAAGCAAACATAACATCTATTTTTGTTT GATTATTGTTAGCATTGAAATGTGTTTATGTGAATTATCATGTTTAAAAGATTGGTGATTATTATTACTAAGCAAAGAAT GAGTGACCATTAACCTGTCTGATTATTTTTTTTACTTGATTACAGGCTCCTGAAGAATATGAGCACCCGCTTCGAGCCTA CGGTACAAATTTGGATCGATCTTCTATCCTAAAGGTAGGTGATTCTTCTTTATACAAACGGGATTTTGAATTTGTGAGAT GAACAAATGATTTAAAGGAAATGCATGTGCTTAAAATTAGTGTCAAATTAAGAATGAGCTTTCCTATTAAACACAGTTGT TTGAATCATTTAAGTGTTGATATACCCTGAGCAGAAGTGGACTAATATGCGAAGGAGGTTTGAACCATGGAACTTAATCA CTTGGTTCTGCAGTTGATAGTTCCATAATCACTTCTAGTGTAGCTTATAGGGTTACTATGCTTTGGATTGTGTCACTGCC AATCATTAGACGTGTTTGAACATTTTGGCTTGTATTTATTTCGGGGTCTTGTGGATGGTACACCTCTCTTAATTCTGCTT GCTTCAACTGCATTTTCCTTTTTTTCAACTTGCAGAGATGTAGCTCCAATGCAAATTTTAGGAACATTAACTCAGACAGA ACGCGGTTTGGTACCAATTGGTTAGACCATTGGATGGAAGATAACTCGCGTGGCCAAACCAGAGATGCACCATCTAGAAA CGGACACCCTGATGATGAGCATAGTGACAAGATTCTCGAAGTAGATACTTGGAAACCGCACTTCAGCTCCCACCACAGTA GCACCAGCTCCTTTCAGACAGCACACTATTATTTGAGTTCTGATTATAACAATGACAACTTTATAGCGTATGAGTCTCCA TCAAAACGTTCGACAAAAGCTCCAAATCAAAGTCTCTCATCAAGGGAGGCATTACCACCTCTAAACTCGTTGAGGTTTCA CAAGGGAAGAGAGGAAGCAGCTTCCCGAACTGCTGATAATAGTCCACAATTAGCATTTTCTGCATCTTCTAGAAGTGGTG CAAGGAGAGGTCCCTTTACGCCTACAAGGAGTGAGTGTTCATGGGGTTTCTTCAGTGGCTACTCGGGTCATCCCAATTAT ATGTCAAATACTGAATCTTATCGAGCTAAGATTAGATCACAGAGTGCACCAAGACAAAGGGTGGAGTTTGAGAGATACAG AGAATGAATAAGATATAGTTCGGGAACTGAAGATTTAAATCGGAGGAAGGGGTGTGCACATAAATGAAAAAAACCTTATT GGACCTCCTTTCATTTTTGTGCACACCTTCCTCCAATTAAAATCTTCTGATCCCGAACTTTAAATCATTCTCTGTTCAAC TAGGAGGCCTGTTCATGAGGAGGGTATTTGGGATGTGGGGCCTAATTTAGACTGAGATTCTGATTCAAGGAGCGGGGTCT TTCCTATCTCCAGCCTTTTGTACAGAATTGAGAGTACCAATTTAAGGTGACATTGCTTGCCTCATGTATGAAGAAGACAA CTCTCAGTTTTTCCAGCTTGTTTTTATCTTTTTAATGTGTGGTAGCAGTTTAGAATGTAATTGTTTTTACCTGTACTCAG GCTCAGCACTGTCTTTTGTCCATACACCATCAAAATTCACATTGTTTACTGGTGTCAAGTGTGTTGATTTGTAAATCATG ACTTGGTTTGACTGTCTTGCTTAGTGGAATGTGCTTGGTTTGAATAACTTACATTGAACTAGTCCCTTTCATATGAATAT GTTAGTGATGATGGATCGAATTAATCAATATTGGGGACCCATCCATGTCGCTGCA
CDS sequence (LotjaGi5g1v0303700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTTTCTCCGGCGACTCTTCGGCACCAAAAAATCCACTCCTCCCACCGACGGTTCCTCCTCCTCTTCCAAATCTCA TAAGAAACGATGGAGCTTCATCAAACACACCACCAAGTCACTCCCACCACCACCCACCGCCTACACCACCCACTTTGACT CTTCCTTCGACGCCAACAAACATGCAATCGCCGTCGCCGCCGCTACTGCCGCCGTCGCCGAGGCCGCTCTGGCCGCCGCC CACGCCGCCGCAGAGGTAGTCCGCCTCACAAACAACACCGGTAGCAGCACCAGAACTAGACCCACCAAGGGTGTGACGCA TGCTGGCCGGAGCCGGTTGCCGGTGGAGATCTCCGCCGTCAAGATACAGTCAGCGTTCCGTGGTTATCTGGCAAGGAGGG CATTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGGAAGAAAACTGCAGATATG CTGAGACGCATGCAAACTTTGGTGCGATTGCAGACCCAAGCACGTGCAAGTCGTGCGCACTTGTCAGATAATACGCGCTC TTTCAAGCCTTCACTTTCTCATTATCCTGCTCCTGAAGAATATGAGCACCCGCTTCGAGCCTACGGTACAAATTTGGATC GATCTTCTATCCTAAAGAGATGTAGCTCCAATGCAAATTTTAGGAACATTAACTCAGACAGAACGCGGTTTGGTACCAAT TGGTTAGACCATTGGATGGAAGATAACTCGCGTGGCCAAACCAGAGATGCACCATCTAGAAACGGACACCCTGATGATGA GCATAGTGACAAGATTCTCGAAGTAGATACTTGGAAACCGCACTTCAGCTCCCACCACAGTAGCACCAGCTCCTTTCAGA CAGCACACTATTATTTGAGTTCTGATTATAACAATGACAACTTTATAGCGTATGAGTCTCCATCAAAACGTTCGACAAAA GCTCCAAATCAAAGTCTCTCATCAAGGGAGGCATTACCACCTCTAAACTCGTTGAGGTTTCACAAGGGAAGAGAGGAAGC AGCTTCCCGAACTGCTGATAATAGTCCACAATTAGCATTTTCTGCATCTTCTAGAAGTGGTGCAAGGAGAGGTCCCTTTA CGCCTACAAGGAGTGAGTGTTCATGGGGTTTCTTCAGTGGCTACTCGGGTCATCCCAATTATATGTCAAATACTGAATCT TATCGAGCTAAGATTAGATCACAGAGTGCACCAAGACAAAGGGTGGAGTTTGAGAGATACAGAGAATGA
Protein sequence (LotjaGi5g1v0303700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFLRRLFGTKKSTPPTDGSSSSSKSHKKRWSFIKHTTKSLPPPPTAYTTHFDSSFDANKHAIAVAAATAAVAEAALAAA HAAAEVVRLTNNTGSSTRTRPTKGVTHAGRSRLPVEISAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKKTADM LRRMQTLVRLQTQARASRAHLSDNTRSFKPSLSHYPAPEEYEHPLRAYGTNLDRSSILKRCSSNANFRNINSDRTRFGTN WLDHWMEDNSRGQTRDAPSRNGHPDDEHSDKILEVDTWKPHFSSHHSSTSSFQTAHYYLSSDYNNDNFIAYESPSKRSTK APNQSLSSREALPPLNSLRFHKGREEAASRTADNSPQLAFSASSRSGARRGPFTPTRSECSWGFFSGYSGHPNYMSNTES YRAKIRSQSAPRQRVEFERYRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 1.5E-136 | – | |
| MobiDBLite | 1 | 45 | 45 | - | – | |
| PANTHER | 1 | 418 | 418 | 1.5E-136 | – | |
| SMART | 114 | 136 | 23 | 1.9E-4 | ||
| ProSiteProfiles | 116 | 143 | 28 | 10.475 | ||
| Gene3D | 116 | 157 | 42 | 1.0E-10 | – | |
| SUPERFAMILY | 117 | 160 | 44 | 3.98E-5 | ||
| Pfam | 118 | 136 | 19 | 2.7E-6 | ||
| SMART | 137 | 158 | 22 | 25.0 | ||
| ProSiteProfiles | 139 | 166 | 28 | 10.091 | ||
| Pfam | 139 | 156 | 18 | 0.011 | ||
| MobiDBLite | 249 | 269 | 21 | - | – | |
| MobiDBLite | 314 | 374 | 61 | - | – | |
| MobiDBLite | 314 | 332 | 19 | - | – | |
| MobiDBLite | 350 | 371 | 22 | - | – | |
| Pfam | 355 | 416 | 62 | 2.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0303700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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