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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0304600 |
| Transcript ID | LotjaGi5g1v0304600.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TraB family protein; TAIR: AT5G52030.1 TraB family protein; Swiss-Prot: sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein; TrEMBL-Plants: tr|I1LDV2|I1LDV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62277875..62282307) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAATGAAAAATAGAATGTGACTAAACCAGTTATGTGTGGCCTAGACAGTAGATACGACTCGTTTCTTCACAGACTT CACGACTAAAAGTTCTGCATTGCTTCCTCACCCTTCACTTCAACTCCTTGTTATCATCATCTTCCTCACTCATCTTCCAT TCCATGGACTCCATCATCAAATCACCCTTCCCAGTTTTCATGACCAACCCATTTTCACTCTCTGCAAGACCTCTCAGCAG ACCCTTCAAGGTTTCCATCAAACCACCACCTCCAGGTTTCGATTACAGGCTAGAGATATTCGAGGAGTCCAGAGCCGCCA TAGCTGCATCTCACCCTGAGTTGCTCGACTTGGCTGACAATGGGAGCTTGGTTTTGGTCCAGAAGAAGAGGTTCGGACCT GTCCCTTCTTGGAGAACTGAATTTGTCGAACCTGAGTCAATATGGTTGGTGGGAACTACCCATGTTTCGAAAGAGTCTGC TTTTGAAGTAGAGCGTGTTGTAAAGGCTGTTAGGCCAGATAATGTGGTTGTAGAACTCTGTAGAAGCAGGTAACCACTCA TTTTTTCTTCACCACCATGAAAAATTTGATATTGTTATGTAGAGTTCTATTCATGTGAGTTATTTCAGCTATACAATTCA AGACATTTGAAAAGAAGGTTTTAATCTATGGGATGATTTCAACTTTTGATGTTAAGGTTGTGAATCTTGTCATAGATATG GCTGCTATATATCTTAACAATTTTACAAACCATGTAGCTTGTGGTTGTGCCTAGCTTTTTGGTGTGTGTTGGATTTCAGT TAGCAAAGGTTCAAACCACCTTAAAAGGAAATCCTTGTCTCACAATAGATTGGAAGAAAAATTAGTTTTAGGTGAATGTA CAAGAAATCCAAATTACTCTTCATAGTAAGAAAATTCATTTAATTATTTTCCAAAATGAGCGAGAACGCTATCTTAAGGA GGGTTGTTGGACAAGAAAGCAATGTAGGCAAGTTATTGTGGTTTGTTGGTTCCCTGTACTTTTGTGTGTGGTTAATATGA ATGTGTGAAAATTTCATAAGAGATAAGCTCCACTTATAACTCATATTATCTGTGGCTTTTAATTTTATTTTTCAACTGAA ATCATAAGTTATGTATATGTCAAAAAATTGTTTATTGTCAATCTACATCTGAACTTCAATTGCTGCAGATTTCATTTCCA GAGCTGGGATCATGTATGCTACTGCTGATGATGAGCTTGGCAAACAATTAAGGTCTAATATGTTTTCTTTGAGCGGGACT GGGTTTTTTGGAGCTGTTGGTCGTAGCATAAACCTGGGTAAGCACAAATTTGTTTGACATGTTTCTCTGATTGCTATAAA AGAATGTTATTTATTGTTTATCTAAATGCCAGGTGGTCAAACTGCTTTAGCATTACGATTACTTCTGGCTGCTTTTTCAT CAAAGATCTCTTCAGATATTAACCGACCCTTCGGTGATGAGGTAGTTTCTAAGTATTCTATCTTTGTAGCACTTGGATGT AGGACTTCTTTTGACTAAGGCAATGTCTGTTACGCAGTTCCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGGCGCAAA TAGTTTTGGGAGATCGGCCAATTGAAATAACAGTATGTACATATTACATCACGAAACACAGGCAAAAATAGTTCTTTAAA GGAAATAAATTAGCTCAGTTTTTTGTTTGGATTTTTATATGTTGAATTTGAACCATGCCAAACAAGTGAAAAGTTCTGAA TGATCTTGGATGCTGGAGTTCGTGATTACATTTTATGTGGTAAATCACAGACAACATTCTCTTTGTCTATAATCTGTCTT GCAGCTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGTGAGATCAGTTATTCGTGCGATAGCAT CTTCATCTAATATTTCTTCAAATGAACTTGAGGTAGCTTCCTAGCCATGGCATAAGATTTAAATTTATACTCTTTTTTCC TTGTTAAGAGTCATGCTTTTATATGCTCGATCCATGATTGTTGAGGAATGAAAAATTGAGGTACTTTGAACTGTCTATTC AAGATAATTAACTCACTTTGAAAATAATCCTCATTTTTATACAATGATTTATAGAACTAAGGTACTCTGGAAAAGTTCAT ATGATCTGCATTAGTAATCTACATTTCTTCTATTGAACGTGAGCTGTGCCATCGCTCAACTTAGTTTTATTGGAAAGCTT GCTATGATGGTATTTTGTGCAAGACACTTTGATGCAGTGGGGTATACATGGATGCATTTGCAACCTTTTTTTTCAAGCCT GTATTTCACTACCTGTGCTCTGTAGTAAGGGTTTACAGTGGGTGTTCTCGGCAAAGGAACCATACAATGTGAGGGGATGC AGGATCTCAACATTCTTTTTGCTGCCATACAAATTTTGCAGTACATAGATAAAAAAAGAGGATGTGACAGGAAGAGGGAG AGGGAGATGAATAATTAATCCTGATGCTTTTATAATGTATGTTTTGCCAAAGTTTGCCATGGTAGTTATTTGGAAAAACT GAATAGTCAAATCTTGTTAGTTGCAGGAAGCTAGGTCAGATGGTGGTAAATTTCAGCTTTATGAGCAACTGAGTTTTTCA TATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATTGTAAGTTTTACCTTGTATATATGGCTTTCTTTCTTTCT TATTTGGTTCCTTAAGCATTGGGATCCATAAATGCCTTTCAATCTCTTTCAAATTATTCATTTCCCTCTTATTTTTTTCT AAAGAAGTTTTGGTAAACCAACTGAAAATTATATAGATAAAAAGGTTATAAACAGAGAGAGTAAACACGCATGAAGTTCT TGCATAAAGATATATCTTCAATTCAAATTGATAAGGAGTCAACTTTCATGTCATCAGTCCTACTTGTGTGGTTTTTGCAG TATCTTGCATGGTCTCTGAAGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTTGGTGTCATTGGAAAAGGCCACAT GAATGGTGTTGTATATGGACTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCAGATGATG GGGGCTGGATTGATGGCCTAGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCATCTTATGGGCCTTATACGAATTC ATAAACGGCAGAACATAAACCAAACCCATTACTTATTCAGATTTGGTGAGAAATCCCAATCTTCAAGAGCAAAAGATTAT ACTAAGAGATTTTATCTTAGTTGTACATCATGATTTACATAAAGCAGGTACGCCATTGCTTTGTTATGAAGAAAAAAGAG ATACAACAGGAGAGAAGAAAGGGAGTGCTAGTTTTATATTTTGCTAGTTATGTGATGGGAATATTGTTTGCAAGTAATAT TTCCCATTGCACTAAAATACAGATATGAAAATTGTAACTATTTGTACCACAATGCCACTGGTTAGAGAAACAGGTTCATG TACTTTCTTACATAAATTGGTCACTTTTTTATCAGCCACTGAGCTTGAACTGTTAGAATGGAAGCTTCATAAATGTTTGT GGCAGAGACTTTGAAAATTCAAGAAGCTCCATGCTTAGTGGTTTGAAAATAGTACTTTAGGATAAAGTTCATTGTTGTGT AATCAAAATTTGATGCATTTTTTTAAAAATAGATTATAAACAATAATTAAACTTTTCAGCACATCACTTAAGCATTAACT ATTTTTCAGTCCAAAAGGCCCATTTAGAATGAAAATAAAAGGAATAGCATAACAAATGCAGAAATTTAGAAACTAAAAAA ACAGTGCAATATTGGATTCATCGGGTGTATCTAAGCTAATATATACCCTACAAATCATGCAATATTGCACTGTTTTTTTA TCAGCATTCATTGACTTTCTTAGTATACATGGAAATAAAATAATAAAACATGACCAAAGCAATGGAATTGTTGAATTGGA AAAGGAATGACTCTAAAATGGAAAAAACCATGATTTTAGCCAATATCTGCAAAACTTTCCCTCTGTGGAGGGTAGCAATT TGAATACACTAGCCGTTGAAAATTAATCTCATGGTACGTGAATAGTGAGTACAAATACTCCAATTCATGAAAAATCTTTG CAGGATTTCTCTTCTTAATCAAAAGCAAAAGGATTGAGGAAAAGAAAATCTTTTGGGGTGCAGAATATTAACTTATTGGA TCTGTTTTAATTTTTCGGAGGATTGTTAATTTGGTATACAATGATATCAGGTCGTTGTGCAGCTTGCAAGAATCAGAGAA GGAAGTGCCCTTCAGATTGCATTTTCTCTCCTTACTTCCCTCCCAATGATCCTCAAAGATATCTGACAGTTCACAGAATC TATGGTGGCAGTAACGTTGGAAGAATGCTTCAG
CDS sequence (LotjaGi5g1v0304600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGGTGGTCAAACTGCTTTAGCATTACGATTACTTCTGGCTGCTTTTTCATCAAAGATCTCTTCAGATATTAACCG ACCCTTCGGTGATGAGTTCCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGGCGCAAATAGTTTTGGGAGATCGGCCAA TTGAAATAACACTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGTGAGATCAGTTATTCGTGCG ATAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGTTGCAGGAAGCTAGGTCAGATGGTGGTAAATTTCAGCTTTA TGAGCAACTGAGTTTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATTTATCTTGCATGGTCTCTGA AGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTTGGTGTCATTGGAAAAGGCCACATGAATGGTGTTGTATATGGA CTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCAGATGATGGGGGCTGGATTGATGGCCT AGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCATCTTATGGGCCTTATACGAATTCATAAACGGCAGAACATAA
Protein sequence (LotjaGi5g1v0304600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGGQTALALRLLLAAFSSKISSDINRPFGDEFRAARKASEEVGAQIVLGDRPIEITLQRAWKSLKWTEKVSLVRSVIRA IASSSNISSNELELQEARSDGGKFQLYEQLSFSYPSLLPPLIHERDIYLAWSLKRSKAVNNCKSVVGVIGKGHMNGVVYG LVSDTGSLRFRDLAGKNSDDGGWIDGLVKSLVRDTIIGIILWALYEFINGRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 3 | 209 | 207 | 1.6E-122 | – | |
| PANTHER | 3 | 209 | 207 | 1.6E-122 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| CDD | 17 | 158 | 142 | 1.84903E-32 | – | |
| Phobius | 18 | 23 | 6 | - | – | |
| Pfam | 23 | 157 | 135 | 5.4E-14 | ||
| Phobius | 24 | 212 | 189 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0304600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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