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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0307300 |
Transcript ID | LotjaGi5g1v0307300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|K7LL60|K7LL60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62529507..62535237) extracted from Lotus japonicus Gifu genome v1.2.
AGAAACACGAGAAAGAAATGAAAAATAAAATGATTTTTTTTTGCTGTGATAGATAAAATGAAGTGATAGACATAAAAAAA TTTAAAAATTGTCGAATAAAATAGAAATTAAGTGAAGTGTGAATAATTAAAACTCTTAGATACCTTTTTATACCTTTTTA TAGTTGACCAAACAAATAATCTTAACGCCGATAAGGGAACAGTAAAAAGCACGTTTTGAATAACTGGCACCCAAAGAACA TAAAATATTATAAAATGCCTACATATAAATATTTTGGAAAATTTTATCTGAATCTTTTCAGGATTTCAAACATAAAAAAA CAATTAACCTCAATGATTAGTTTAGTGGAGCATGAGAATGGAGGGGTATGACAGAGTTTTGTATCTGACATGTCGGAAAT TTGAACTGTCGCTAGTCTCCTTGAGGTAATATACTAATTTAAGTCTAAGTTTTCTTTAAGTCATATTTAAGCCTTGACGT TTTTCCATATACTATAGACCGAGACACTATCCCCTCATCTAAAAATTGTAGAAAAAGAAACATAAAAAATAAAAATAATT GAAGATGCTATCCACATAACTAAAGCAAACATAAAATTCTTGCAAAAAAGAAAAGAAAAAAACTAATTAAAGCCAAACAC ACCATGCATGTCCCATGAGAACATTAATTTATAGACATAAAATCAAAAGCAAGAGCAATGATATGGCGGCAGGTGTGATT GATTCTTAGCTTATACAAAAGATACATATCCGAGGATCCTATATTATATCAGTCAAGTAAGGAAGTCTGAAACCCTTATT ACCCAAATTAACTTCAATTTGTTTGTCTTAGTATCTTTGTGAGCCCAAAGCAAAGATACAATATGAACCCTTTCCACTCC ATTGATGAACTGTACTTTTCATCTGCTAATTATTCCCTACCAATCCAAACAACCACACCACTAACACTAGATCAGATCTC GCCTGATCCTGTGATGGATATCAGTGATCTTCCTTGTGCAAAAGATCACAAGAGTTCCAATATTCATGAAATAAAGAAGT GGATGCATAGAGAGTCAGAAAAGCAAAGAAGGCAAGAAATATCAAAGCTTTGCGCCACCTTTAGATCCCATCTTCCCTTA GCATATATCAAGGTAATTAAACACCATAGACACATTAGTATTTTCATTTTATCTTTAGATTTTCAGCTGTCTAGACTCAT AGAGTAATAGAAATTTGAAACTCATTTAGGCAGGTTCGGAAGATTGATTTGAGTTTATCTTTATAGTATAGTTACTTATG CAAGTGTTTGTGAGAGTTTAATAATTTATGACTTACTTACATGCTGTTTGAGCTTATTTTCATAAGCTGTTAAAATTAAC TTATGAATAAATGTTTATATAAATGTTTGTGAGAGCTTATACGATACGTTGTGACTATTTATAAGCTGATTGATCTTATT TTCATAAGCTAGTTGCTCAGGTTAACTTATGAATAAACGCTTGTGCAATGGTTTGTAAGAGCTTATGTAAATAGTCTATC ACTAACATATAAGCTCTCTGAGCTTATTTCAATAAACTTACCATAAACTTATCAAATTAGCTTATGAATAAAGATTTATG CAATGAAGACTTATTGTTGTAAGAGCGAAATTAAGTTATTTACCCAAATGCTCGTTTAACCATTAATTAAAAAGATATTG CATTTCAATGTGAGCATATGTATGTTGATTATATACTGTCATCAGGGAAAGCGTGCTACATCTGATCACATACATGAGGG CACGAATTATATCAAACACCTTCAGAATAATGTGAAAAAGTTGCAAGACAAGAGGGATGAGTTAATGAAGTTGTCAAATT TTAATCATGTTGGCTCAGAGAGTGCAAACTTTGCCACCTATGTCATTGTTCATCCTTGTTTGGGAGGCATTCAGATTAAG TGCAGTTACAGCTTCAAGAAACATGCGTTTCCATTGTCAAGAGTGCTGGACATTGTCCTCAAAGAAGGGCTTAATGTGAT CAATTGTATTTCCACCAGAACAGATGATCACAGGTTCATTCACACTATCCAATCAGAGGTATTACCATATATCAAATTAT AAATTGTCTGTAATTAATTATGATCATCATTAGTTCTGATTTTTATTATAATCTGCCTTGAAGGGTCCACACTTTTTGAT GAATGAGACTAACTACACTGAACTGCAAAGCAAGCTAATCGCTGCGATATCATCTTCAAGTAATTAATTATAGCATTTTT TGTGCTTAATTAGCAATATATACTTTCATCTATTTGTATTCTTCAATTTTGTGTGAAGATTCATATTGTAGAATTTCTTT TAACAACTTAAATACTAAATAGCTATTGTAGGTCAAGAGGAGTTTGATGGAAGAGGAGTATCCTACATCAGATGATGAAG ATTGAAGACAAGGCATGTCCTCCATATAATTGCATTAGCCCAAATTAATGTTTTGGATTAGATGCTACCCTTCAACTTGC TAGTTTAAAACACACTAGTGATTATACCCGTGCGATGCACGGGCGCTAAATCATTATTTTCGTTGAAACAAATGCGATTA ATTTAAACCAACAATAATTCATTATTTTATTACAATTTATGAGATCCCAACTACTCATTTATTCACATAATTATTTTTTC ACAATATCAAAACTAAGAACACAAACAGGAAACATCAACAGGTATAATACGCTAAGAAACATAAAATCAATGTATTCAAT TGAAACCATTGAGCCACAAAGCACTCAATTGTTTCGAACAATTACAACTTTAAAAGTATCAGGCGCTTGCAACTTGAAAA ATTTCAATTGATCGGTGAAACTGAACCTGCTTGCCCTGCAATACTCATACCATCCAATGCCTATCATGCATTTGGGGTAG CTCGTTTCGTCCCAATTCAAAAACCACTCAGTAACATAACCATTTGGCAACACCATGTTAATGAATGTAGGATGGTGAGA CAAATGATCTTCTAGTATTCGAGTTGGGATAGGCTGTTAAGGGAAAATTAAAATTAACAATACTAAAAGATAAATAATTA TGGGATTGAGATATAATAATGAATAACATACCAATCTTTTATCACCTCTACAAAGTTCAGGGGTTAGATCTATTGTCCAT ATGGGGTCACGCCCAAAAGGCTCTGCATTATTAGGGCCAACATAATTTATTTCCATCTCACCATCACCAAATATTCGTAT GTCATAATGATTATCATGAATATGACAGAGATGAATTATAGATGTTCCTTCCAAGTTATGTTTGTGGCAAATTCTCTGAA ATACTTCCTCAAACTGAACTCCTGTTCCACATCTTGTAACCAAGCAATGGAAAACGTTCCCAACAGGGTCAAACAAAACA ACCATCTCATTTTCAAGCACGTGTGAATGTGAATCTATAAACTGCCTGGGTAAATCCATGGAATTCTAACAAAAGAAAAC CATTAACCAATTAAATTTATAATCGGGTTACTAAATAATGAAAAGAATACAACTTATTCATATAAAAAAAACATACACGA TTTGCATGAAGTAGCGTGTGGAAAGATCTTGCATGAGTGGGAAGGGAGGCAAAGTGTGTTGGTTGCATGGTGGAAATGGG AGAGGTGATTCAATAGTTTGATTGTGTGGGTGCATGAATCAAATTAAACCAGTCATATATATAGGGAACAATGAGACTAA AATAAAGTACCATTGCTAAGTGATGGTACAATGCAATTATATGTGGATAGAGTATTTGAATGTTTTAAATGTTAACTTTA AGTTGTTGGAATCTAAGTTAGGTGAGGGACAATAGTAGAATAAGAACATAGTGTCTTGTCACCTTTTGGTCACATGGCTA TACTTGCAAAAAATATCTACCTTTTATGACAAAATATATAAATTTACTTGCTTGGTAAGGTTTAGTTGAAGCTATAATAT TCTCGTGTAGCATTAATAATCAATGGATATCTCTTTTCATAACAAAATATCATATAGTACAATTAGCTATCATGTGTTTT ACTACAGACAAAATATTCAGTAAATCCCTAGTCATTCTACCTCAGCTTTTACAACCCATTCAATAATTCAAGTGTGTGTG TGTGTGTGGGGAACTTTGACATGAATTACAATAAGTTGGGTACATCTATAATTCACCACAGAAACAAAATAGACTAATAT TCTCAATGACTACTACCATGAACCAAGTTTAAAGGAAATCATTGAAGATGAAACAGACATCCAACACCATCCATACATGA CAACTTATCAACTCAAGTTCAGCAAAATTAACAACACAAACATATAATTAAACACTCCATACATAGCAAATTTAACTACT AATGCAGCCAATATAATTACTAATACTAATAGACACATAAAGTCTAGAGATAACACCACCAATTCAAAGATAAACCCATT ACAAAATCCAAAGTTCCTTCCCAAATCCAAAGACCAAACTTCAGCAGCTCCCAAATTAGTGGCGGATAATGACAACCTTG TAGGTGTCGGCTTGAGGCATCTTATAGAATACTAACTGGTCACGAGCACGGAGACGTTGGTTCGTAGCAAAATCATACCA ACCAACCCCGAACACACATTGCCATGGCCTCTCTGTGGCCCATTTCAGAACCCATCGCTCCACGGACTCATCAGGTAATA TGATATTCAGTGATGATGGATGGTGTTTGAGCTTGGTATTCACATATTTTGCAGGGATGCTCTATAAAAAATAAATAGAG ATATCAATAATGGCACAAATCTATCCATATAAAGTATGTGAAATAGACTGAGATACAAATACACTACCAACACTTGACCG TCAGTGACCATCGGTTTGGTGAGCACATTCAACCACGCAAAATACCCATCATCATGATCTGCAAAATCCTCATCATCATC ATCAACAGGATCCTCTAGCACTTGATAATTAACCTCCGTGACCTCGTCATAAAATATCCTAATATTGAAATGGCCAGTCC CAGTATACGTATAATGGACACGAACAATATCAGCAATGTTGTGTGCTTGGCAGATATCTTCGAAACCTTCCGCAAAAAGC AATTTACTGGCTTCTGATCTGACCTTAATTGCAAACGTGTTGTCCATTGGATCCGAGAGAAGGACATTCTGCAACTGTCC AACATCAGGGAATTTTCTCACGAACCACTTAGGAACAACGACAGATTCCTACAGAAAAAACATGGAATGATCAGTAACTA TATATGTATCATAAAATTGCTTAATATACAACATCAAAGATGAATTGCAACATTATTTGTAAACTAAGAGACAATACATG ATAAAGATAAAGCTAAGTACAATATAAACTTGTCACTAAAAATGTGAAAAAAGTGATGGGAAAGCTGAACATAAACATGA ACATAGCAGATTCTCAATATTTCAGCTTTGAGCTTTCTTTCAAAAGCAAATCTAACATAAACCCTGAATTATAAGTCAAA TATACAATTTTATTTACACATAAACACTGATCAATTTTTTGATCCATGATAATGTCAGAACCAGCAACATTCTATTAGGT AATGTCATAAACACAGATAACATGAACTGAAAGTGAAACTATTGCCAATTGTAAATTAACTACTTTCACAACTCCCAGTC TTAAAATCCTTCTTTGGCCAAATAAATATCCTCAGCTAATTAAGTGCATTTTACGAACCAGTTAAAACTCATTGAGGAGT ACATAATGTCTAAAGATGGGGGAGGGGTTGCATATCAATAAACAGTTAAAC
CDS sequence (LotjaGi5g1v0307300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCTTTCCACTCCATTGATGAACTGTACTTTTCATCTGCTAATTATTCCCTACCAATCCAAACAACCACACCACT AACACTAGATCAGATCTCGCCTGATCCTGTGATGGATATCAGTGATCTTCCTTGTGCAAAAGATCACAAGAGTTCCAATA TTCATGAAATAAAGAAGTGGATGCATAGAGAGTCAGAAAAGCAAAGAAGGCAAGAAATATCAAAGCTTTGCGCCACCTTT AGATCCCATCTTCCCTTAGCATATATCAAGGGAAAGCGTGCTACATCTGATCACATACATGAGGGCACGAATTATATCAA ACACCTTCAGAATAATGTGAAAAAGTTGCAAGACAAGAGGGATGAGTTAATGAAGTTGTCAAATTTTAATCATGTTGGCT CAGAGAGTGCAAACTTTGCCACCTATGTCATTGTTCATCCTTGTTTGGGAGGCATTCAGATTAAGTGCAGTTACAGCTTC AAGAAACATGCGTTTCCATTGTCAAGAGTGCTGGACATTGTCCTCAAAGAAGGGCTTAATGTGATCAATTGTATTTCCAC CAGAACAGATGATCACAGGTTCATTCACACTATCCAATCAGAGGGTCCACACTTTTTGATGAATGAGACTAACTACACTG AACTGCAAAGCAAGCTAATCGCTGCGATATCATCTTCAACTATTGTAGGTCAAGAGGAGTTTGATGGAAGAGGAGTATCC TACATCAGATGA
Protein sequence (LotjaGi5g1v0307300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPFHSIDELYFSSANYSLPIQTTTPLTLDQISPDPVMDISDLPCAKDHKSSNIHEIKKWMHRESEKQRRQEISKLCATF RSHLPLAYIKGKRATSDHIHEGTNYIKHLQNNVKKLQDKRDELMKLSNFNHVGSESANFATYVIVHPCLGGIQIKCSYSF KKHAFPLSRVLDIVLKEGLNVINCISTRTDDHRFIHTIQSEGPHFLMNETNYTELQSKLIAAISSSTIVGQEEFDGRGVS YIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 47 | 228 | 182 | 2.0E-84 | – | |
PANTHER | 47 | 228 | 182 | 2.0E-84 | ||
Gene3D | 55 | 132 | 78 | 5.6E-8 | ||
ProSiteProfiles | 57 | 109 | 53 | 11.687 | ||
CDD | 58 | 114 | 57 | 7.35359E-9 | ||
SUPERFAMILY | 58 | 126 | 69 | 5.23E-12 | ||
Pfam | 59 | 110 | 52 | 5.7E-7 | ||
Coils | 99 | 126 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0307300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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