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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0307300 |
| Transcript ID | LotjaGi5g1v0307300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|K7LL60|K7LL60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62532248..62534414) extracted from Lotus japonicus Gifu genome v1.2.
TGTCTTAGTATCTTTGTGAGCCCAAAGCAAAGATACAATATGAACCCTTTCCACTCCATTGATGAACTGTACTTTTCATC TGCTAATTATTCCCTACCAATCCAAACAACCACACCACTAACACTAGATCAGATCTCGCCTGATCCTGTGATGGATATCA GTGATCTTCCTTGTGCAAAAGATCACAAGAGTTCCAATATTCATGAAATAAAGAAGTGGATGCATAGAGAGTCAGAAAAG CAAAGAAGGCAAGAAATATCAAAGCTTTGCGCCACCTTTAGATCCCATCTTCCCTTAGCATATATCAAGGTAATTAAACA CCATAGACACATTAGTATTTTCATTTTATCTTTAGATTTTCAGCTGTCTAGACTCATAGAGTAATAGAAATTTGAAACTC ATTTAGGCAGGTTCGGAAGATTGATTTGAGTTTATCTTTATAGTATAGTTACTTATGCAAGTGTTTGTGAGAGTTTAATA ATTTATGACTTACTTACATGCTGTTTGAGCTTATTTTCATAAGCTGTTAAAATTAACTTATGAATAAATGTTTATATAAA TGTTTGTGAGAGCTTATACGATACGTTGTGACTATTTATAAGCTGATTGATCTTATTTTCATAAGCTAGTTGCTCAGGTT AACTTATGAATAAACGCTTGTGCAATGGTTTGTAAGAGCTTATGTAAATAGTCTATCACTAACATATAAGCTCTCTGAGC TTATTTCAATAAACTTACCATAAACTTATCAAATTAGCTTATGAATAAAGATTTATGCAATGAAGACTTATTGTTGTAAG AGCGAAATTAAGTTATTTACCCAAATGCTCGTTTAACCATTAATTAAAAAGATATTGCATTTCAATGTGAGCATATGTAT GTTGATTATATACTGTCATCAGGGAAAGCGTGCTACATCTGATCACATACATGAGGGCACGAATTATATCAAACACCTTC AGAATAATGTGAAAAAGTTGCAAGACAAGAGGGATGAGTTAATGAAGTTGTCAAATTTTAATCATGTTGGCTCAGAGAGT GCAAACTTTGCCACCTATGTCATTGTTCATCCTTGTTTGGGAGGCATTCAGATTAAGTGCAGTTACAGCTTCAAGAAACA TGCGTTTCCATTGTCAAGAGTGCTGGACATTGTCCTCAAAGAAGGGCTTAATGTGATCAATTGTATTTCCACCAGAACAG ATGATCACAGGTTCATTCACACTATCCAATCAGAGGTATTACCATATATCAAATTATAAATTGTCTGTAATTAATTATGA TCATCATTAGTTCTGATTTTTATTATAATCTGCCTTGAAGGGTCCACACTTTTTGATGAATGAGACTAACTACACTGAAC TGCAAAGCAAGCTAATCGCTGCGATATCATCTTCAAGTAATTAATTATAGCATTTTTTGTGCTTAATTAGCAATATATAC TTTCATCTATTTGTATTCTTCAATTTTGTGTGAAGATTCATATTGTAGAATTTCTTTTAACAACTTAAATACTAAATAGC TATTGTAGGTCAAGAGGAGTTTGATGGAAGAGGAGTATCCTACATCAGATGATGAAGATTGAAGACAAGGCATGTCCTCC ATATAATTGCATTAGCCCAAATTAATGTTTTGGATTAGATGCTACCCTTCAACTTGCTAGTTTAAAACACACTAGTGATT ATACCCGTGCGATGCACGGGCGCTAAATCATTATTTTCGTTGAAACAAATGCGATTAATTTAAACCAACAATAATTCATT ATTTTATTACAATTTATGAGATCCCAACTACTCATTTATTCACATAATTATTTTTTCACAATATCAAAACTAAGAACACA AACAGGAAACATCAACAGGTATAATACGCTAAGAAACATAAAATCAATGTATTCAATTGAAACCATTGAGCCACAAAGCA CTCAATTGTTTCGAACAATTACAACTTTAAAAGTATCAGGCGCTTGCAACTTGAAAAATTTCAATTGATCGGTGAAACTG AACCTGCTTGCCCTGCAATACTCATACCATCCAATGCCTATCATGCATTTGGGGTAGCTCGTTTCGTCCCAATTCAAAAA CCACTCAGTAACATAACCATTTGGCAACACCATGTTAATGAATGTAGGATGGTGAGACAAATGATCTTCTAGTATTCGAG TTGGGAT
CDS sequence (LotjaGi5g1v0307300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCTTTCCACTCCATTGATGAACTGTACTTTTCATCTGCTAATTATTCCCTACCAATCCAAACAACCACACCACT AACACTAGATCAGATCTCGCCTGATCCTGTGATGGATATCAGTGATCTTCCTTGTGCAAAAGATCACAAGAGTTCCAATA TTCATGAAATAAAGAAGTGGATGCATAGAGAGTCAGAAAAGCAAAGAAGGCAAGAAATATCAAAGCTTTGCGCCACCTTT AGATCCCATCTTCCCTTAGCATATATCAAGGGAAAGCGTGCTACATCTGATCACATACATGAGGGCACGAATTATATCAA ACACCTTCAGAATAATGTGAAAAAGTTGCAAGACAAGAGGGATGAGTTAATGAAGTTGTCAAATTTTAATCATGTTGGCT CAGAGAGTGCAAACTTTGCCACCTATGTCATTGTTCATCCTTGTTTGGGAGGCATTCAGATTAAGTGCAGTTACAGCTTC AAGAAACATGCGTTTCCATTGTCAAGAGTGCTGGACATTGTCCTCAAAGAAGGGCTTAATGTGATCAATTGTATTTCCAC CAGAACAGATGATCACAGGTTCATTCACACTATCCAATCAGAGGGTCCACACTTTTTGATGAATGAGACTAACTACACTG AACTGCAAAGCAAGCTAATCGCTGCGATATCATCTTCAAGTAATTAA
Protein sequence (LotjaGi5g1v0307300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPFHSIDELYFSSANYSLPIQTTTPLTLDQISPDPVMDISDLPCAKDHKSSNIHEIKKWMHRESEKQRRQEISKLCATF RSHLPLAYIKGKRATSDHIHEGTNYIKHLQNNVKKLQDKRDELMKLSNFNHVGSESANFATYVIVHPCLGGIQIKCSYSF KKHAFPLSRVLDIVLKEGLNVINCISTRTDDHRFIHTIQSEGPHFLMNETNYTELQSKLIAAISSSSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 227 | 181 | 4.0E-84 | – | |
| PANTHER | 47 | 227 | 181 | 4.0E-84 | ||
| Gene3D | 55 | 132 | 78 | 4.9E-8 | ||
| ProSiteProfiles | 57 | 109 | 53 | 11.687 | ||
| CDD | 58 | 114 | 57 | 8.6961E-9 | ||
| SUPERFAMILY | 58 | 126 | 69 | 4.58E-12 | ||
| Pfam | 59 | 110 | 52 | 5.1E-7 | ||
| Coils | 99 | 126 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0307300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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