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LotjaGi5g1v0307400.1

Overview

Field Value
Gene ID LotjaGi5g1v0307400
Transcript ID LotjaGi5g1v0307400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120; TrEMBL-Plants: tr|I1NGM8|I1NGM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:62536113..62539991) extracted from Lotus japonicus Gifu genome v1.2.

AAGGGATTACAATGTGCTTGCGTACCTACTACGTACTACTAGGTGAGTTGTTTAGTATGCAATTAAACATGCGCATAAAT CACAAATAAATAATTTACGAAAAAGAAAAGTAAAATTAAATAATATTACATAGAAAAATGAGGAACCTGATCAAGATTGA GTGTCATAATCGGAGTGAAGGTTCAATGTTTTTCCCTTTCCAGCTATACAGACAGGGATTCCCTCTTTAGAAATATCCAA ATATCCAATACCAGAGCAAGAGAATCTATTTTATTTATTCAACAAGATCAGATTTTGGGCCAGAAATAATCACTTATCAC AATCCTCTGATCAGAAAATCCATGGCGGAAGATAAGATTCAACGTATCATATCTTCAACTTCTGACAACGATGAAAAGAA GATCAATCGTAGGGAAGTTGAAAGACAAAGGAGGACCCAAATGTCGGTTCTATGTGCTTCTCTCCGCTCTTCACTCCCTC TTGAGCTCATCAAGGTCTTTATTTAACTTCCATGTTTCCTCTTATATACACCACCAATATTTTATATTAATTTATCACAT TTTCAACATCCTAGTTTCTAATCTAGGCTAGCTAGCTATACTTTGGTTTTTGTATTAATATATAGTTTTAGTTTTATGCT AAGTAGTATAATTTATTCTGAAGTCAAAATTAATTCTAAGAAAATTAAACTTCTGTAATTTGTTTCTGGATACGAGAACT GATTCAGAGAAAAATGAAGTGTATATATCCAAACATGTGATAACTGATAAGTCATTAGATCAATAGAGCTCTCTCCCTCA CTCTTTATACTATGGGGAGTGTCATTAATCAAATTGCAAATTTGTTTAACAAAAAAAATGTGTTTAATTTGGTTTTAAGA GTTTGAATCTTCATTTTTTTTTTTTTGAAAAGCAAGAGTTTGAATCTTCATGTGTGGTTACAGGGAAAGCGTTCTGTATC AGATCTCATAGGGGAGGCTGTAAATCATGTCCAATTTCTGAAGCAAAAGATCAATGCACTTCAAATTAAGAGAGATGAAC TCAAAGAGATGATGGTAAATTTAAGTTTTGTTAAAACTGAAACTGTTGGAGCAGATCATTCAAGTGCACTAGGGAAGTGT GTCAGCATCAATCTCATTCCAGGCGGTGTGGAAGTTGCAGTGTACGGTAGTGGTTTTGAAGAAAACAGTACACGTTTATC AGTTTTGATGCAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCTTCCTTAGTAAATGGGAGAATCTTTC ATACTATCAAGTCTGAGGTAATTAACTAGCTAATTAATTAATTAAGATATACTCTTGTATCTTTGCAGTATGCACTACAG GAAATAGCGTCAAAATTTAGCATCTGATGCCAATGCTAATTACTAATTAGTATCGATTTTTTCCCACTCTAATTTCTGAT TTTCTTTTCTTGTAGTGTGCTATTAATCTAGGGTGTATATATATATATATATATATATATATATATAAGAGTTTGGACAT TTACACTTTTATGAGTATATAAAATTGTTGAATAGGTGAAGGACCTGACATGCCTTGATCTTGCTAGGCTTCAACACAGA TTGGATCAAGCAATCTTGTCAAGGTAACTATGCCGGTTGAGAGGACCATGTGGGATTTGTGATCAGTGCTAATTAATGAT CACTATTATATTCTAGCTAAACTTTGCTTTGTTGATTTACGCATATACTTTGTACCTGTTATGTAGTACTTCTAATGTCA ATTTCTTACTACTGAAGTCAATGTGTGAGTAGTGACCAGGATTCTCAGTTTGCCTGATGATGTGGAGAAAATATTTCGTG GAGTGTCTGCATCCAATTTAAGAAATGATGAGAAAATAGATAACTCATAGTTGTGATGTATAATGTGGTGTATGTTGAGT CCCTGTAAGTTTTGGATGTTTAAAAATCAAGATTTGTTAAACATAATTGCTGATGTTTGATGTTTTTGTTAGATTTTAAA ATAGTTGCAAAGGATAGGCACAAGGATTGTGAAGATATAGCCGTGTGACTCATTGATCTGTTTAAGAGTAGATCAAGTAT ATACTAATACAATGGTGGCTTCAAGAATTAACAGTTTTATTAATTTTTTCGACTTTGATTTCTAGACAGTTCAGATTCTA TTTAGATCCTTCCTTGCTTCAACTTGGTATTAGTTACTCCATCTGTTCCTATTTAACTGTTCAGGAAGAGAAGAAACACA CATATTAAGGAGTGCAATTAATTTTGTTAGTTTTCATAAAAGTAGTATTTGTTTTTCATTTTTACCCTTTAGATTGCATT TTATCTTTCTTCATTTATTGTTCTGATAAGGGTATTAGTTGTAAAAACATCATTTAATGCTCTCTTAAAATGCTAAATGG ACAGTTAAATAGGAACAAATTATTTTTCTCAAAGTGGACAGATAAATAGGAACGGAGGGAGTAATACTTAGTATGCATCA TGAAGAAAAGTATAAGATAAGAGTAATGATTGATTCACACTCCACTTTCTTTTCTATCTTATTTTAACTATTTTTAATTT CTTTCTACATCACCTATAATTTCACTTATTTCTCTCTCTTTTCTTCCTATTTCATTAAAGTGGAGGTGAAAATGCCGAAA TGATTTGTGAACAAAAGTGTTATTTTAGTTATATTTTGAGTTATAACCGTGTATAAACCATTAGTTTAAAAGCGTTGTGA TAAGAAAAACAGAAAAAAGATGGATAAATATTAAAAAAATTATAAAATCAAGTGTGAAAAATTGAAATGTCATAATGGTT TTTTTTAATATAGAAAATAGAAGAATTGATTGATAGATAATGATCAATATATAGTACAAATATCACATAACAATGTGAGC AAAAGTCCCCCAAATGCTAAAAAGCAAACCTGTAAACGAGCTCGTCCCATAAAACACTATAAAGTACACTAACCGATAAA CACAACCATAAGGGCCTTACCCCAAATCAAGCATTAAACGACCAACGAAAGCAGGATTCTGTCGGGGACCTAGATGCGGT GAGAGGAAGCCTCGCAAACCCAGCAAAAACAGAACCTCATATTAGCATTGAGGAGACAAGAATTAGCCCAAGACATCGAC CAAAGGCGTAACAAAATCGAACCATACTCTAATGACCACCAACGACAAACCCATAACACACCAAAAGCCCGAACAAGAGT AGCTTGGCACGAGAACACCTCGGCACAAACGGAACAACGTTGTAAAGAACCAGCCTATGCAAAAGGAGCATCATCCTAGC CAATCAAACATTGTCTCTACAACTTGGCACGAGAACACCTCGGCACAAACAGAACAACGTTGTAATCCTAGCTTGTTCGT TGACAAATCCAGGTAAGAAAAGGGAATTTCCTGAATAATAGACCCAACACATACCCCAACAACTATGCTGCCACCAAGAC TCATTATCCCTTTGTTGGGACCAGTTCAGCAGATTGAAGCTCCTCAAATGGGACCCCAGTGGCTGGATCTTCCTGCTCAG TTGTGTCGCAAACAAATGAAAAGCCCCCCGTGTTCAGAATGAGAAATTATTTATCGGAGCTATACCGACTTTTACAATGG GGGAGGTGCTTGTATCAACATTTTTTGTTTTTTCAGCTGTTCAAAAGTGTAGTCGTAGACTTGAAAAATATAGCCGTGAA GTCTTTAGCCCTTTTAGGCTCCTTTAAAAACTTTGCATCTTACAATTTGTCCTTTATCTTTACTGTTCTATGATTATAAA TAGACTTCATCTTCGAAATTCAATATTGTCCTTCATCAATAAAAAGTAGGTACCAATTGGCAGATTAATTTACCGAAGCA TTCTCTAGTTCAGAGACCCAAAGGACTCTACATCTGACT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0307400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAAGATAAGATTCAACGTATCATATCTTCAACTTCTGACAACGATGAAAAGAAGATCAATCGTAGGGAAGTTGA AAGACAAAGGAGGACCCAAATGTCGGTTCTATGTGCTTCTCTCCGCTCTTCACTCCCTCTTGAGCTCATCAAGGGAAAGC GTTCTGTATCAGATCTCATAGGGGAGGCTGTAAATCATGTCCAATTTCTGAAGCAAAAGATCAATGCACTTCAAATTAAG AGAGATGAACTCAAAGAGATGATGGTAAATTTAAGTTTTGTTAAAACTGAAACTGTTGGAGCAGATCATTCAAGTGCACT AGGGAAGTGTGTCAGCATCAATCTCATTCCAGGCGGTGTGGAAGTTGCAGTGTACGGTAGTGGTTTTGAAGAAAACAGTA CACGTTTATCAGTTTTGATGCAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCTTCCTTAGTAAATGGG AGAATCTTTCATACTATCAAGTCTGAGGTGAAGGACCTGACATGCCTTGATCTTGCTAGGCTTCAACACAGATTGGATCA AGCAATCTTGTCAAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0307400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEDKIQRIISSTSDNDEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQIK RDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRLSVLMQILLQEGCDVVSCVSSLVNG RIFHTIKSEVKDLTCLDLARLQHRLDQAILSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13935:SF115
1 190 190 3.9E-79 –
PANTHER
PTHR13935
1 190 190 3.9E-79
IPR015660
MobiDBLite
mobidb-lite
1 20 20 - –
Gene3D
G3DSA:4.10.280.10
11 87 77 8.0E-9
IPR036638
SUPERFAMILY
SSF47459
17 91 75 3.01E-11
IPR036638
CDD
cd00083
18 74 57 1.49606E-6
IPR011598
ProSiteProfiles
PS50888
18 70 53 11.712
IPR011598
Pfam
PF00010
19 70 52 3.1E-5
IPR011598
SMART
SM00353
24 76 53 0.0041
IPR011598
Coils
Coil
67 87 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006357
Biological process Regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Subterm of
Regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0307400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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