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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0307400 |
Transcript ID | LotjaGi5g1v0307400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|I1NGM8|I1NGM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62536113..62539991) extracted from Lotus japonicus Gifu genome v1.2.
AAGGGATTACAATGTGCTTGCGTACCTACTACGTACTACTAGGTGAGTTGTTTAGTATGCAATTAAACATGCGCATAAAT CACAAATAAATAATTTACGAAAAAGAAAAGTAAAATTAAATAATATTACATAGAAAAATGAGGAACCTGATCAAGATTGA GTGTCATAATCGGAGTGAAGGTTCAATGTTTTTCCCTTTCCAGCTATACAGACAGGGATTCCCTCTTTAGAAATATCCAA ATATCCAATACCAGAGCAAGAGAATCTATTTTATTTATTCAACAAGATCAGATTTTGGGCCAGAAATAATCACTTATCAC AATCCTCTGATCAGAAAATCCATGGCGGAAGATAAGATTCAACGTATCATATCTTCAACTTCTGACAACGATGAAAAGAA GATCAATCGTAGGGAAGTTGAAAGACAAAGGAGGACCCAAATGTCGGTTCTATGTGCTTCTCTCCGCTCTTCACTCCCTC TTGAGCTCATCAAGGTCTTTATTTAACTTCCATGTTTCCTCTTATATACACCACCAATATTTTATATTAATTTATCACAT TTTCAACATCCTAGTTTCTAATCTAGGCTAGCTAGCTATACTTTGGTTTTTGTATTAATATATAGTTTTAGTTTTATGCT AAGTAGTATAATTTATTCTGAAGTCAAAATTAATTCTAAGAAAATTAAACTTCTGTAATTTGTTTCTGGATACGAGAACT GATTCAGAGAAAAATGAAGTGTATATATCCAAACATGTGATAACTGATAAGTCATTAGATCAATAGAGCTCTCTCCCTCA CTCTTTATACTATGGGGAGTGTCATTAATCAAATTGCAAATTTGTTTAACAAAAAAAATGTGTTTAATTTGGTTTTAAGA GTTTGAATCTTCATTTTTTTTTTTTTGAAAAGCAAGAGTTTGAATCTTCATGTGTGGTTACAGGGAAAGCGTTCTGTATC AGATCTCATAGGGGAGGCTGTAAATCATGTCCAATTTCTGAAGCAAAAGATCAATGCACTTCAAATTAAGAGAGATGAAC TCAAAGAGATGATGGTAAATTTAAGTTTTGTTAAAACTGAAACTGTTGGAGCAGATCATTCAAGTGCACTAGGGAAGTGT GTCAGCATCAATCTCATTCCAGGCGGTGTGGAAGTTGCAGTGTACGGTAGTGGTTTTGAAGAAAACAGTACACGTTTATC AGTTTTGATGCAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCTTCCTTAGTAAATGGGAGAATCTTTC ATACTATCAAGTCTGAGGTAATTAACTAGCTAATTAATTAATTAAGATATACTCTTGTATCTTTGCAGTATGCACTACAG GAAATAGCGTCAAAATTTAGCATCTGATGCCAATGCTAATTACTAATTAGTATCGATTTTTTCCCACTCTAATTTCTGAT TTTCTTTTCTTGTAGTGTGCTATTAATCTAGGGTGTATATATATATATATATATATATATATATATAAGAGTTTGGACAT TTACACTTTTATGAGTATATAAAATTGTTGAATAGGTGAAGGACCTGACATGCCTTGATCTTGCTAGGCTTCAACACAGA TTGGATCAAGCAATCTTGTCAAGGTAACTATGCCGGTTGAGAGGACCATGTGGGATTTGTGATCAGTGCTAATTAATGAT CACTATTATATTCTAGCTAAACTTTGCTTTGTTGATTTACGCATATACTTTGTACCTGTTATGTAGTACTTCTAATGTCA ATTTCTTACTACTGAAGTCAATGTGTGAGTAGTGACCAGGATTCTCAGTTTGCCTGATGATGTGGAGAAAATATTTCGTG GAGTGTCTGCATCCAATTTAAGAAATGATGAGAAAATAGATAACTCATAGTTGTGATGTATAATGTGGTGTATGTTGAGT CCCTGTAAGTTTTGGATGTTTAAAAATCAAGATTTGTTAAACATAATTGCTGATGTTTGATGTTTTTGTTAGATTTTAAA ATAGTTGCAAAGGATAGGCACAAGGATTGTGAAGATATAGCCGTGTGACTCATTGATCTGTTTAAGAGTAGATCAAGTAT ATACTAATACAATGGTGGCTTCAAGAATTAACAGTTTTATTAATTTTTTCGACTTTGATTTCTAGACAGTTCAGATTCTA TTTAGATCCTTCCTTGCTTCAACTTGGTATTAGTTACTCCATCTGTTCCTATTTAACTGTTCAGGAAGAGAAGAAACACA CATATTAAGGAGTGCAATTAATTTTGTTAGTTTTCATAAAAGTAGTATTTGTTTTTCATTTTTACCCTTTAGATTGCATT TTATCTTTCTTCATTTATTGTTCTGATAAGGGTATTAGTTGTAAAAACATCATTTAATGCTCTCTTAAAATGCTAAATGG ACAGTTAAATAGGAACAAATTATTTTTCTCAAAGTGGACAGATAAATAGGAACGGAGGGAGTAATACTTAGTATGCATCA TGAAGAAAAGTATAAGATAAGAGTAATGATTGATTCACACTCCACTTTCTTTTCTATCTTATTTTAACTATTTTTAATTT CTTTCTACATCACCTATAATTTCACTTATTTCTCTCTCTTTTCTTCCTATTTCATTAAAGTGGAGGTGAAAATGCCGAAA TGATTTGTGAACAAAAGTGTTATTTTAGTTATATTTTGAGTTATAACCGTGTATAAACCATTAGTTTAAAAGCGTTGTGA TAAGAAAAACAGAAAAAAGATGGATAAATATTAAAAAAATTATAAAATCAAGTGTGAAAAATTGAAATGTCATAATGGTT TTTTTTAATATAGAAAATAGAAGAATTGATTGATAGATAATGATCAATATATAGTACAAATATCACATAACAATGTGAGC AAAAGTCCCCCAAATGCTAAAAAGCAAACCTGTAAACGAGCTCGTCCCATAAAACACTATAAAGTACACTAACCGATAAA CACAACCATAAGGGCCTTACCCCAAATCAAGCATTAAACGACCAACGAAAGCAGGATTCTGTCGGGGACCTAGATGCGGT GAGAGGAAGCCTCGCAAACCCAGCAAAAACAGAACCTCATATTAGCATTGAGGAGACAAGAATTAGCCCAAGACATCGAC CAAAGGCGTAACAAAATCGAACCATACTCTAATGACCACCAACGACAAACCCATAACACACCAAAAGCCCGAACAAGAGT AGCTTGGCACGAGAACACCTCGGCACAAACGGAACAACGTTGTAAAGAACCAGCCTATGCAAAAGGAGCATCATCCTAGC CAATCAAACATTGTCTCTACAACTTGGCACGAGAACACCTCGGCACAAACAGAACAACGTTGTAATCCTAGCTTGTTCGT TGACAAATCCAGGTAAGAAAAGGGAATTTCCTGAATAATAGACCCAACACATACCCCAACAACTATGCTGCCACCAAGAC TCATTATCCCTTTGTTGGGACCAGTTCAGCAGATTGAAGCTCCTCAAATGGGACCCCAGTGGCTGGATCTTCCTGCTCAG TTGTGTCGCAAACAAATGAAAAGCCCCCCGTGTTCAGAATGAGAAATTATTTATCGGAGCTATACCGACTTTTACAATGG GGGAGGTGCTTGTATCAACATTTTTTGTTTTTTCAGCTGTTCAAAAGTGTAGTCGTAGACTTGAAAAATATAGCCGTGAA GTCTTTAGCCCTTTTAGGCTCCTTTAAAAACTTTGCATCTTACAATTTGTCCTTTATCTTTACTGTTCTATGATTATAAA TAGACTTCATCTTCGAAATTCAATATTGTCCTTCATCAATAAAAAGTAGGTACCAATTGGCAGATTAATTTACCGAAGCA TTCTCTAGTTCAGAGACCCAAAGGACTCTACATCTGACT
CDS sequence (LotjaGi5g1v0307400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGATAAGATTCAACGTATCATATCTTCAACTTCTGACAACGATGAAAAGAAGATCAATCGTAGGGAAGTTGA AAGACAAAGGAGGACCCAAATGTCGGTTCTATGTGCTTCTCTCCGCTCTTCACTCCCTCTTGAGCTCATCAAGGGAAAGC GTTCTGTATCAGATCTCATAGGGGAGGCTGTAAATCATGTCCAATTTCTGAAGCAAAAGATCAATGCACTTCAAATTAAG AGAGATGAACTCAAAGAGATGATGGTAAATTTAAGTTTTGTTAAAACTGAAACTGTTGGAGCAGATCATTCAAGTGCACT AGGGAAGTGTGTCAGCATCAATCTCATTCCAGGCGGTGTGGAAGTTGCAGTGTACGGTAGTGGTTTTGAAGAAAACAGTA CACGTTTATCAGTTTTGATGCAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCTTCCTTAGTAAATGGG AGAATCTTTCATACTATCAAGTCTGAGGCTTCAACACAGATTGGATCAAGCAATCTTGTCAAGGTAACTATGCCGGTTGA GAGGACCATGTGGGATTTGTGA
Protein sequence (LotjaGi5g1v0307400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEDKIQRIISSTSDNDEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQIK RDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRLSVLMQILLQEGCDVVSCVSSLVNG RIFHTIKSEASTQIGSSNLVKVTMPVERTMWDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 181 | 181 | 2.2E-69 | – | |
MobiDBLite | 1 | 20 | 20 | - | – | |
PANTHER | 1 | 181 | 181 | 2.2E-69 | ||
Gene3D | 11 | 87 | 77 | 8.1E-9 | ||
SUPERFAMILY | 17 | 91 | 75 | 3.01E-11 | ||
CDD | 18 | 74 | 57 | 3.97224E-7 | ||
ProSiteProfiles | 18 | 70 | 53 | 11.712 | ||
Pfam | 19 | 70 | 52 | 3.1E-5 | ||
SMART | 24 | 76 | 53 | 0.0041 | ||
Coils | 67 | 87 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0307400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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