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LotjaGi5g1v0307500.1

Overview

Field Value
Gene ID LotjaGi5g1v0307500
Transcript ID LotjaGi5g1v0307500.1
Lotus japonicus genome version Gifu v1.2
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|G7ID49|G7ID49_MEDTR Transcription factor; Found in the gene: LotjaGi5g1v0307500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:62545760..62548895) extracted from Lotus japonicus Gifu genome v1.2.

TCGGGTTGTTGATAAAGTCACTAATAATACTATCACTTTCCCCCTTGTTGTGTGGGGAATATTATTTAATTTATTTGGTA CAAGGTCCCTACGATCCCTTCTACTTCATTATCATCTACATACCAAAAATTGATCTGAACAATCAGTCGAAGAGGTGACG TGACCAATCATGTTTCCTTTACAACGAAGCAATAAGCTGGCGACCCCGTTTTCAAATAGTGTCCGCCACCGGCAACACAA AATCTCCGAAGATCAGATCCTCGATGATTGTGATTCCCTGGTTGTTGATTTCTCTGATAAAAAACTCTCTAGTGGCCGCA CCAAGAGAATACTTTATCATAGTACTGCTGGTACGACTCATGCTAATAACTCTGAAGAATTTAAGAAGAAAAAGATGGTT CATAGAGAGATTGAGAAGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTCCTCCCTCTCCACTT CATCAAGGTGAAATATCTATTTTCCATATGTGCTCTTTTTTTTTCAGCTCAGTTTGATCTTTCAAGTAATTGACAAGATC TTCCCACTCATAGTTTCGAGTATTTTGTATGAAAAAACTCAGCTCGCACTTATCTTGACATAAATGCTGCTAGCTCGAAC ATGATTGATTTTGATAGAGAATTTAGAGCTTTGTTGATAAGATTGACAAACCCTTTTGAAATCAGCTTAAATTAATTTTA TTTCCATTAGTAAGAACCCAAATGGGGAGGTCTCTATGTGTTTATTTATTGTGTGTCATCACTCTTCACACAAACCCTAG ATTCTTCTCTCCTGATTTATTGGAGTGCTTGAAGTTTTGTGACTTAATTATTTTCTAACTTTAGGGTTACTCTAATTAAT AATGGGCTTTCAGGGAAAGCGTTCTTTATCTGATCAGATGAATGAGGTAGTGAATTACATAAACCACCTGCAAAAGAACA TAAAAGAGCTCAGTGACAAGAGGGATGAACTTAATAATCTCTCCAATATTCTCAAGAAGGACCATGCATCTGCTAGTTTC ACTTTCCACCAGAGTGATGGATGTGTGGGAATTGAAATCACTAGTGGCTTCAGAGAGGAAGAAGGGTTACCAGTTTCGAA ATTGCTGGAAATTTTGTTAGAAGAGGGGCTTGAAGTTGTTAGTTGCATTTCAACCAAAGTTAATGGAAAATTACTCCACA GTATGCAGTGTGAGGTATGGAGATCCAGGGAATGTTATCATTTTGTTTTCTTATTTTACAAATCTTACTCTAATATTTTT ATGTTTATCCTTCACAGGTTAACAGCAATTCCGAAAGTGTAGATCTAACTGAGCTGAGAAGGAAAATTTCCAATGTTATT CAATCATTTTCATGTTCTGATTAACTATGTGTGGAATTGGAAATAGGTGACTCATCTTCCCAATTACAGAAAATTAAAAA ATTAGGCTTAGTCTGAGGTATATCATCTAACTGCTTGTAACTAATCGAGTGTGGCTTGTAACTGCGTATAATAAGATTTG TGACTTACATTAAAGTTTGTAAACATGTTACAGGTTAGAAACATGTATCTTTTACCCAACAATTGGTTAACCTGTTGGAA TAACTCGTTTGTGACATGGTATCAGAACTATGATTAAGTTGTTTAGAGTTTGATCTTTACTATCAGCAATTACTTTTATA AAAAGTTGAATTTCTGTACATAGTAGGTGACTTGTGCATTGTACATACTCCATGACTTCATGCCAAAATGAACTCTTAGA TAAGGGAGCATGAGAAGTTACAATATTTGTTATACATGATTATAAACTAAACTTAATAACTTACCAGCAGTGTAACAAAA CATGTTATGTTTGGTGCATGCATGATCCAAAAGATTACTGATTGCCAAGGAGTGTATGGTCTAGTCAAAAACCTTAGTTA AGGCAATTTAACATCCGGCTATAACACTTATGAACCTTTATTTTGCTCTCCAACTCCGTTACATAGAATCTGTGGCTAGT TTTTATAGGCGTAGCAAAATATATAGTTTCATATCTTTGTATGGCTCTATATAAATTTTTCCTGGAACCTTTTCGGTGTA TATGAGTCATATCTTTTATCATATTGCTTGCATTTAGCTTACTAATATGAGCAGTTTTACTCATAAACCACGGTTTTACA AGTAACATCTGGCACATATAATTCACAATCCATGTGTTAAAATTAAATTTCAGACAAATTATTCTACTTGTGAACAATGT TTTTCTTTTTACGGTGGGCAAAGCATATTAATAATAATTCCACCAGTATCTATATTTTTTATTGAGTGAATGCTTGCAAA TATCGGAAGATGTGTCGTAGAAGCCTTTTTTAGTTAGTTTAAGTCTATCAGAAGGACCATATTAGAGTGATTATATAATT GAATTTAAATATGGACTTCAGGCTAAATGTAGATTAGTTATAACTTCTGTATTGTTTGTGTTCATTTCTTAGCAATATAT ATGTAGTTTAAGTGCTTGAATCATATATACAGCAGAATAAATTAAAGTAATATTAGTTACCTTACAAAAAAATTAAGTAT TTGATATTTGTTTTTATTCTGCGTTTGGATTTTTGTTGATCGCTATAAGATAATTGCCATGCAAGCTAATTTCAAAATAT TTTTGTGTTTATTTTTTTCATTAAATAAGTCTCTCATGATGTGAATTGTGGAGAAAAGCAAGTAATAATACCCATTTGGC GTTAAGAAAATTGCTCCCAATCTGATCACTCGTTGCTAGATTTGTTGGAATTAAGTTGGCGGTTTCTATGAATGAAGTTC AGTTCTTTTTTATTATTAAAATAATCAATAGTTATTTATAATTAATTATATATTATTTAATATCAATTGGCCTATTAGCT CAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCATGGGCCATGTTAAATTTTTCGTTCT TTTTTTTTTGTTAATTTGCTTGATTTTTCCCACTAACACATGAACACAAAGAGATAATCTTGAGACAGAAAACACTCCCA CCGATGGGCTAGCCCTCTAACATAGATTTATTTCCTTACAAATGACGCGAATACAAGACTTTGCTTTAAGGACTTAAGTA TGTATGTATCACTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0307500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTCCTTTACAACGAAGCAATAAGCTGGCGACCCCGTTTTCAAATAGTGTCCGCCACCGGCAACACAAAATCTCCGA AGATCAGATCCTCGATGATTGTGATTCCCTGGTTGTTGATTTCTCTGATAAAAAACTCTCTAGTGGCCGCACCAAGAGAA TACTTTATCATAGTACTGCTGGTACGACTCATGCTAATAACTCTGAAGAATTTAAGAAGAAAAAGATGGTTCATAGAGAG ATTGAGAAGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTCCTCCCTCTCCACTTCATCAAGGG AAAGCGTTCTTTATCTGATCAGATGAATGAGGTAGTGAATTACATAAACCACCTGCAAAAGAACATAAAAGAGCTCAGTG ACAAGAGGGATGAACTTAATAATCTCTCCAATATTCTCAAGAAGGACCATGCATCTGCTAGTTTCACTTTCCACCAGAGT GATGGATGTGTGGGAATTGAAATCACTAGTGGCTTCAGAGAGGAAGAAGGGTTACCAGTTTCGAAATTGCTGGAAATTTT GTTAGAAGAGGGGCTTGAAGTTGTTAGTTGCATTTCAACCAAAGTTAATGGAAAATTACTCCACAGTATGCAGTGTGAGG TTAACAGCAATTCCGAAAGTGTAGATCTAACTGAGCTGAGAAGGAAAATTTCCAATGTTATTCAATCATTTTCATGTTCT GATTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0307500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFPLQRSNKLATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSEEFKKKKMVHRE IEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELSDKRDELNNLSNILKKDHASASFTFHQS DGCVGIEITSGFREEEGLPVSKLLEILLEEGLEVVSCISTKVNGKLLHSMQCEVNSNSESVDLTELRRKISNVIQSFSCS D
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13935:SF95
11 241 231 1.4E-79 –
PANTHER
PTHR13935
11 241 231 1.4E-79
IPR015660
Gene3D
G3DSA:4.10.280.10
64 154 91 5.6E-9
IPR036638
CDD
cd00083
72 130 59 7.99296E-8
IPR011598
SUPERFAMILY
SSF47459
72 143 72 7.72E-12
IPR036638
ProSiteProfiles
PS50888
73 125 53 12.646
IPR011598
Pfam
PF00010
74 126 53 3.5E-8
IPR011598
Coils
Coil
115 149 35 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006357
Biological process Regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Subterm of
Regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0307500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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