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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0307900 |
| Transcript ID | LotjaGi5g1v0307900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-L-fucosidase 1; TAIR: AT2G28100.1 alpha-L-fucosidase 1; Swiss-Prot: sp|Q8GW72|FUCO1_ARATH Alpha-L-fucosidase 1; TrEMBL-Plants: tr|A0A1J7FTS4|A0A1J7FTS4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62580530..62586177) extracted from Lotus japonicus Gifu genome v1.2.
CGACAACTCGAAGAGTTGGAACCAACCAAAGTGCATATCACAATGCAATCTTTACTGTCTTAAGTCCATAGTTCCATTAA TAATATTTTGTCTCCATCCCCAAACATTCATTTTCTTCCACTTACATAAACAAGAAGAATTGAAGAACAATCAAAAGTAT CATGGCTAGGCTATGTCACTCTTCTTTCTTAATCACAACACTATTACTCCAGTTTTTCAGCTTCTGCATTTCTTGGCATG AGCAAGTAGTACCAACACCCCCATTACCAATTCTCCCACTACCAACATTTTCCCAGTTGAAATGGCAACAAAGGGAGATC ATAATGTTCCTTCATTTTGGTGTCAACACATTCTCAGACAGAGAATGGGGCACAGGCCATGAAAGCCCAGCAATTTTCAA CCCAACGGGCCTCAGCACAGCCCAGTGGGCCAATGTGGCAGCAGAGGCAGGAATTTCACTAATGATATTAACTGCAAAAC ACCATGATGGGTTCTGCCTCTGGCCTTCTAAGTACACCAAACATTCAGTCATTAGCAGCCCTTGGCAAGGTGGTAAAGGC GATGTTGTTGGAGAGTTTGTGAATGCAGCTTCTGCACAAGGAATAGATGTAGGGATCTATCTTTCACCATGGGATAGGCA TGATTCTAGATATGGGCATGATTTGCTTTACAATGAATACTACATGGCTCAATTGCAAGAGCTTCTCAACAAGTGAGTTC CTATTCTGTTCTGTTTCTCTTTTGCTGTTTTGTAATTGTTTTCTTAGCTGATTTTGCTTTTTTTTATGGATTTATTGGAT GTTTTGAAAACCTTCTATAATTGATTCCGATATAAAAAACAACTCTAGGAAAAAAACACACTCATGTGAGTTGCTTCTGA GTGTGAAAATTAACTATGAAAAAATAGAAGTGTATTTGGATCAACTTAGCAAAATTGATTTCAAACATTTGATTTGTACT TTTATGAACAAAGTTGTTTATGTAAGGTAATGTTATCAATTTTATATGTAAAATCTTAGAATTGATTATGCTTAATGTAG AAGCAACTATTTACCGTGGCAAGTACAATTGATTTTTAACTCATTTATGTATGTTTGGATTTCTGTTGAACTTAACATAA ATCAAATTTGAAGTCAGCATGTCAAAATCAGGCTTTTTATGGCCCACATTAAACTTAACATGCCAAATTCTAACTTTTTT ATTGATACTTTAAGATTCATGAAATCACATTTGCTTTTGCTTTAACACCAAAACATACACAAAATCAATTTTACCGGTGC ATCCAAGCATCATTTAACCAGTTAGAATTGATTTTAACCAACTAGATTATGCTTCACATAATCACCTTGTGTTTTAAACT TTTCAGATATCAAAATGTAAGGGAGATTTGGTTTGATGGTGCAAAGGATCCCAAGGCACAAAATGTATCATATTATTTTT CAGATTGGTTCTCTATGGTAAAGGAGTTGCAGAGTTCCATCAATATCTTCTCCGATGCTGGTCCTGATGTTAGGTGGGTG GGAGATGAAACAGGGTCTGCAGGGTACACGTGTTGGTCTACCATTAATCGAACCTCACTAGCAATTGGAAGTCCAAACAT TTCAAAGTAAGTGGTGTTTCTTTTTCAAGCAACATTGCACGCCAGAAAAGATGCCACTTTTTTCATTTTGCTTTTTACAC TGAACTCTATAGGGATCTTGAATGATAAGGTACTAAGAGCATCTCCAACGCTGGGCTCTTAGCCCAGCTGGAGGGCTTAA GAGCCGGCTCTTATTTTTTCTGTGCGTTGGAGAGAGCCTTCAAGCTCTTAGCTACAGTGCAGAGGCTCTTCTGCAAGAGC TTTTGCTTTGTGGGCTCTTACATTAAAAAATTATCTTCTCTCACATGCTCCTCATCAACTACTTTCAGAGGGAAGAAACG GTAGAAGGGAAGAAGAAGAACAACAGATTTGAAATAAACTACACAAGAACATAACCAAAATCAATTTTTTTTAAAAAAAA AATCCAAACTTTACAACCAAAATCAAACTGAATGATAAAAAATCAAACTTTTACACTGCAACTGATATTTACATAGAAAA AAAAAATCTCTGAGCCTTGCATGTCCGATCTGCTTGAAAGGGATATGATCTGGAGACTTGCATGTGCGAAAAAGGGGCTT CCTTTCCCCTGATCTGATCTGGTGGCTCCGATTTGGGTGGTGGTCAGTCGATTTGGGGGCGATGAGGTGGATTTTGGCTG TGGTGGTGGGTGTTTGAGGCGGTGAGGTGGGTTGGGTTTCGGTGGGTTGGGTTTCAGTGGTGGTGAGGTTGCAGTGAGGT TGCAGGTAGAAACAGAGAAGAGAAGAGGGGAGAAGAAGAGAAGAGGGGAGAAGAAGAAGAAGAAGAGAAGAGGGTTTCGA GGAGGCAGGGGAGAAGAGGGGAGAAGAAGAAGAAGAGAAGAGGGGAGAAGAAGAGAAGAGGGTTTCGAGGAGGCAGGGGA GAAGAAGAGAAGAGGGGAGAAGAAGAAGAAGAAAAGAGGGGAGAAGAAGAAGAAGAGGGTTTCGAGGGGGAGAAACGGCT AGGGTTAGGAATTGGGGCTGAAATGGGTTTATATATAGGGTGACCGGTTGGGCAGGTCACCCTCCCGTTGTGGACCGGTT TCAGACCGGTTTTGACCGGCTGGAGCCGGTTTTTTTACTGTTTTAGGTTGTCTGACCGGTTTGGCCGGTTATCAGACCGT TTCTCTCACATTTTCAGCTTTTATACATTATATATAGTGTGCACTTCATCATTTTACACATCAATTTTTACTCCCACAAG TTCTCTCTTGTCCAAAGATTCAAACAAAATTCAAAATGGATCACCATCATTATCAACAATACTATGAATTGTTGGACGAT CAAACACTTCCCACCAATGAAAGTTCTCAACCTCCGCCGGTGTTACAACAAGGAAACCAACCTTCACAGGTGTTTCGACC TACGCCGTCATTTCCTTTCGTATTTATTTTGTTAATGTAATGTATTAAGGTCTCTCTTAGGGATTGTTGTACTCTTTTTC CTTCACTAGGCTTGTATCCCAATTGGGCTTTTCCTAGTAAGGTTTTAATGAGGCTCTCTCTCTCAAGTTTGGCTCTCTTT TATTTCTATAATTCAATACAATGTACTTTTTTTAAAATTTTTAAGTTAACATGTTCAAATTTAAAATTTATTTTTTAAAT TTTTTAGTAAAATTAATTTTAAATTAAATTAGTATAAGTAATAATTAAATTAATTTCTAGTTGAAGTATTGATATACTAT TAAATTTTAAATCTAAATTAGGTGAAAATAAATATCATTATTTAATGTTGTATGGTGGGACAGGGTGGGACCCTTGTAAT AGTAATTTAAGAGCTCATGCATTGGAGCAAAATCTGCTTCAGGCTCTTAGCAGGCTCTTAAGTCTGACGTGGCAAATGAA TAGTGCTGAATAGTGTATAAGAGCTCAGATAAGAGCCCAAGGCATTGGAGTTGCTCTAAGTACTAGTAACTGAGAAGCTT GAGTGCTAGATTTCTTTATTAGAAAGAAAGTGCAAGCTTTCACAGTTTCACCCATAAGGAAAAAGAGGAAAAAAAAAAAA ATAGTAAACAAACTGCATTTCTTGTGTGAGCCTTCTTTCTGTCTTATTAGACAGTATGGGTACTAGGTAAGTCTCAAACA ACCAAACTGTCATAATATTAAAAGACTCCTTTGTGCATCAAACGTGGTGGGTGCTAGGTGAGTGTTAAGAATTATTGCAT GTTTAGTTTAAATACACAGCGAAAAACCACAGTGAGTCCAAAATTATGGTGCACAGTCGTAAAAGCTAAAAGAAGTTACT TTTACCCACCGTAATTTAGCTTCATTGTGTATCCAACATGCAGTTAATTCTTCAATGTCATAATCAATTTTCACGTGTTT GAATGTTTCTTTTCATAATTAATTATAGCTCTAAAATCAATTTTCACTTAACTTCTGACAAAGCTAATCCAAATACAGAC TAAAAAAAATTGTTGGAATAGGAATCCAATCACTCAAATGCAAAAAAATTATCACTTTCATAATGAAGAAATACTGATAT ACCTAGCTTACCTACAATATTTTTCTTATGGTTAGAGTTACTTGGTGAGTTGAGCTAACCAGCATGGGAACTTGCTTATC ACAATGCAGGTATCTAAGTACTGGTGATCCAAGAGGGACAGATTGGCTACCAGCAGAATGTGATGTTTCAATAAGAAAAG GATGGTTTTGGCACAAGTCAGAATCACCAAGAAAGCTAAGTGAGCTACTTGATATTTATTACAATTCAGTTGGGAGGAAT TGTGTGTTACTTCTCAACGTACCTCCCAATACAACTGGTCTTATATCTGACACTGATGCTCATAGATTGAAAGAATTAAG AAGTGCAATTAACACAATATTTCACAAGAATCTAGCTGAAGATTGTTATGTTAAAGTTAGTAGCCAGAGAGGAGGAAATG AGGGAGGGTTTGGACCAGAAAACATGCTAGACAGTGATCACTTGTGGTCCTACTGGGCCCCAAGGGAAGAAGAAGAAGGT GAAAATAATGACCATTGGATTGAAATTTGGGGCAAGGATGGGAGTTTGAGATTCAATGTGATTAGAATACAAGAAGCAAT TGGACTTGGTCAAAGGATCAAGCGGCATGAAATTTATGTGGATGGTAAGCTGATCATCAAAGGGACAACAGTGGGTTATA AGAGGCTTCACAGGCTTGATGGAGATGTGAATGCTCAGGTTGTGAGGATCAGAATTAAAAAGGCAAGAGCAGTGCCTCTT ATTTCTTCTATTGGTCTGCATTTTGATCCTTACTGGCACTCAAGTTTTACTGTGACATGAAGAGCTAAATTTGAGAAAAG GATCATAACTTGCATAAAAGAAACCTATCACATAAAGAATATTGTAATCTTGTTCTGTGTTGTAAAGAACAAAGTATTCA TTTAGGTGATAATTTCATGCTTTTCAATGTGTTAAATTTTGGTTGCATATGTGGTAGACTACTGACTATCAAATACATAA AATAAAATAAAAAAACTGCTGAGGGAAATCATGAATATATTAGAATAAAAGCTATCAATTTCTTGGCGATTCTTATAAAT ATAAAAATCTAGCCTTACATCCAGTCAAGTGGGAGGAAAAAAAGCCTAATCAATAACAAAATAAACAAAAAAATAGCACT ATACTATACCTAAAAAATTTGGATGTTAATGGATTGGGGACACATTGAGCCTATCTGAACTTGAATACTCCACATAACCT GTGAACTCTCATGCAGTTAAGCTCCCATTATGAACAAAAATGAATGCTCAACTCTCAGTCAGCTTCACCATCTCTTTCCA TTTGAGTTGCTATGACCTCTCCCACCACCATTGGAAAATCTGTCATTCCTGCCGCCACCACCACCTCTTCCACCTGAAAA CCTGTTCCCCCAACTTCTATCACCACCACGACCACCACCATCTCCAAATCTGCCCCCTCTTGATTGATCTTTCTGTTGTA AACGCGGCAATGCTTTTAAAACCTCTAAACTTACATTCGCTGCATTTTCCTGACCTGAAGGACAAGTATGATTGAATGAA AAATAAGACCAAAATAAAAGCTATATGTAGAAATGTTGATGCATACCC
CDS sequence (LotjaGi5g1v0307900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGGCTATGTCACTCTTCTTTCTTAATCACAACACTATTACTCCAGTTTTTCAGCTTCTGCATTTCTTGGCATGA GCAAGTAGTACCAACACCCCCATTACCAATTCTCCCACTACCAACATTTTCCCAGTTGAAATGGCAACAAAGGGAGATCA TAATGTTCCTTCATTTTGGTGTCAACACATTCTCAGACAGAGAATGGGGCACAGGCCATGAAAGCCCAGCAATTTTCAAC CCAACGGGCCTCAGCACAGCCCAGTGGGCCAATGTGGCAGCAGAGGCAGGAATTTCACTAATGATATTAACTGCAAAACA CCATGATGGGTTCTGCCTCTGGCCTTCTAAGTACACCAAACATTCAGTCATTAGCAGCCCTTGGCAAGGTGGTAAAGGCG ATGTTGTTGGAGAGTTTGTGAATGCAGCTTCTGCACAAGGAATAGATGTAGGGATCTATCTTTCACCATGGGATAGGCAT GATTCTAGATATGGGCATGATTTGCTTTACAATGAATACTACATGGCTCAATTGCAAGAGCTTCTCAACAAATATCAAAA TGTAAGGGAGATTTGGTTTGATGGTGCAAAGGATCCCAAGGCACAAAATGTATCATATTATTTTTCAGATTGGTTCTCTA TGGTAAAGGAGTTGCAGAGTTCCATCAATATCTTCTCCGATGCTGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGG TCTGCAGGGTACACGTGTTGGTCTACCATTAATCGAACCTCACTAGCAATTGGAAGTCCAAACATTTCAAAGTATCTAAG TACTGGTGATCCAAGAGGGACAGATTGGCTACCAGCAGAATGTGATGTTTCAATAAGAAAAGGATGGTTTTGGCACAAGT CAGAATCACCAAGAAAGCTAAGTGAGCTACTTGATATTTATTACAATTCAGTTGGGAGGAATTGTGTGTTACTTCTCAAC GTACCTCCCAATACAACTGGTCTTATATCTGACACTGATGCTCATAGATTGAAAGAATTAAGAAGTGCAATTAACACAAT ATTTCACAAGAATCTAGCTGAAGATTGTTATGTTAAAGTTAGTAGCCAGAGAGGAGGAAATGAGGGAGGGTTTGGACCAG AAAACATGCTAGACAGTGATCACTTGTGGTCCTACTGGGCCCCAAGGGAAGAAGAAGAAGGTGAAAATAATGACCATTGG ATTGAAATTTGGGGCAAGGATGGGAGTTTGAGATTCAATGTGATTAGAATACAAGAAGCAATTGGACTTGGTCAAAGGAT CAAGCGGCATGAAATTTATGTGGATGGTAAGCTGATCATCAAAGGGACAACAGTGGGTTATAAGAGGCTTCACAGGCTTG ATGGAGATGTGAATGCTCAGGTTGTGAGGATCAGAATTAAAAAGGCAAGAGCAGTGCCTCTTATTTCTTCTATTGGTCTG CATTTTGATCCTTACTGGCACTCAAGTTTTACTGTGACATGA
Protein sequence (LotjaGi5g1v0307900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARLCHSSFLITTLLLQFFSFCISWHEQVVPTPPLPILPLPTFSQLKWQQREIIMFLHFGVNTFSDREWGTGHESPAIFN PTGLSTAQWANVAAEAGISLMILTAKHHDGFCLWPSKYTKHSVISSPWQGGKGDVVGEFVNAASAQGIDVGIYLSPWDRH DSRYGHDLLYNEYYMAQLQELLNKYQNVREIWFDGAKDPKAQNVSYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETG SAGYTCWSTINRTSLAIGSPNISKYLSTGDPRGTDWLPAECDVSIRKGWFWHKSESPRKLSELLDIYYNSVGRNCVLLLN VPPNTTGLISDTDAHRLKELRSAINTIFHKNLAEDCYVKVSSQRGGNEGGFGPENMLDSDHLWSYWAPREEEEGENNDHW IEIWGKDGSLRFNVIRIQEAIGLGQRIKRHEIYVDGKLIIKGTTVGYKRLHRLDGDVNAQVVRIRIKKARAVPLISSIGL HFDPYWHSSFTVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| PANTHER | 24 | 488 | 465 | 5.7E-224 | ||
| PANTHER | 24 | 488 | 465 | 5.7E-224 | – | |
| Phobius | 25 | 493 | 469 | - | – | |
| SUPERFAMILY | 35 | 345 | 311 | 6.32E-87 | ||
| Gene3D | 36 | 354 | 319 | 8.7E-122 | – | |
| SMART | 38 | 352 | 315 | 2.4E-12 | ||
| Pfam | 76 | 340 | 265 | 7.1E-35 | ||
| Gene3D | 361 | 481 | 121 | 3.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Alpha-L-fucosidase activity | Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0307900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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