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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0309000 |
| Transcript ID | LotjaGi5g1v0309000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A151RD65|A0A151RD65_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi5g1v0309000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62702145..62704662) extracted from Lotus japonicus Gifu genome v1.2.
ACATTTCAACAAGACAATATCAATAAAGGGAAGACACAAACAGGTTCATGCGAGCAAAGGAAACCATGATGAAGAGGAGG CAGAGGCAACCATCTTCGCGACGATGTTTGCCGGTTTTACCGGAGGAGATGATTTCCGAGGTCCTTTCTAGGGTTCCGGT GAGGCCCCTTCTGCGATTCAGGTGCGTCTGCAAATCATGGAAAACCCTAATTTCCAGTCCCCAATTCGTCAAGAACTACT CTCGCATCTCATGCTCCGACCAACGATTGGCCTGTATGACTCACACTGATTGGAGAGAAATAACAACATGTTCTTTGCAG TCACTGTGCGAAAGCCAAAACGACCTAATAGCCCCTTCGGAAACCTCTAGCTTCAGGGTGGAACGCAGGTATAATCTTAT TTTAGGGTCATGCAATGGGTTGCTGTGTTTATGTGATGATTTAGGTTTTTTCAAATTGAGGAACCCTTTTACCAAATTGG CATCCAAAAGATCGCCACTTCTTGGTCTCATGAATCAGCGGATCCCAATGACAATGGCAATGTATGGTTTCGGTTATGAT CAAGTTAACAACAAGTACAAAGTGCTAATTACTTATGATTTTATCACCAAACTCCATACCTTTGGTACTAAATCTTGGAC AACAATTCAGACTTTCCCGCCTTGTGAACCACCGCTGCATTGGTGGGATAGAGTAGGAAAATTTGTGAGTAGTGGTAGTG GTACTCTTAATTGGTTGGTTGGAGAAAGAGATCGTATTATTTCCTTTGATCTGGAGAAGGAGACTTATGGTGAAGTATTG CTACCTCTTGCTCACCATGTGGATCGTGACCTCCCCAACAATATTGAAGTCTTGAACAATTGTCTTTGTTTGTGTTACTT AAATGATATGCATTGTGTTCTGTGGTTGATGAATATGTATGGCATTCAAGAGTCTTGGACTAAATTGATTTTGATCCCTC GTTGCAAGATTCCAGGGCCCATTGGTGTTTTTCTTCACATTCGCCCCTTGTGCATTTCAGAAAATGGCTTAGTTTTGATG GAGGTGGATTATGATCGTCTCTACTTACAATTAGTCACGTATAACGCATTGAATGGCAAGTTGGATTATCCTAAGATCAT GAGGCCGGGTAGTTGGCATTATATGCATATTTACCATGAGAGTTCAGTTTCACCATTGTAGAGTCTTTCTATTTTTTATT TATTGTAAGAGTCTTTGTATTCTTACTTTTACTATTTATTATGGTTTTTTAACGACTTTTGATCTCATTTCTCGAATATT ATAAAATGAGGCTTGATTTATTTGGGGAACCTCACTCTTCCTCTCTTAGTTATATGTATTACTGGTTGTTGGTTCTATTC ACCTTGTGTAGTTCTCTTCTTTCTATCATATTTAGATTTCATATTTATGTGATGTCTGAGTACACATGATTAATTTGGTT GGCTAGAAGAAGAGACTGATGCATCCTCTCTAGTGGAGTGATTAATAATTGTGTGTGTATATTTATCTGCATTTAAGAGT TTTTAGGATTTTCGGTTTCTTCTCTTTGAATATGATATTCCTCTGATTGGTAAGAACTTTGGAGATTGTTGTTTTATGTA ACTGTTGAGGAATTCTGGTGTTGTTTATAGGAGCATGACTGAAGTAGCTCCTCTGATTTTATTTTTGGCCCACTGTCCAA CAATTGTTTTGTAATTTCATTGATAGTTTTCTAAGATACTATGATTTGATGTTTTTAACATTCAGTTGAATTGACTTGTT TCATGGTTAGAGTTCGGAATCTTCAAATTGATAGAATTTTGAAGTGATTGCAATTATGGAGAAAATCTAAAGAAGATGAA ATTCCCATATAGATCGGCGGAAACTATGTCGATCAATTTCTTATATCTTGTGGGCTTAAATCGTTTTTACAGTATGTATT ATGCAATGCACTATATGGTTGTGAGGAACATAAATGCATAAGTCATTGTGTTCTTCCTTCGGCTCTTAATACCATTCCCA TGTTTTATGCTTCACGATGAGGGAAACAGAACCCTATAACTTTATCCTTTCGTGGTCTGAGCTTGTCACAACACTAACCC TTGCCTCACCCTTGTTCGTGTTCTTTCTAACGCATCTCTCTGTATCAAGGTTTTTCTTTTTCTTAGATTTTGAATCTCTA ATTCCAATGTGTATGGCTGAGCTATGGATTAGTCTTTCCCCACTCCTTGGGACTTTGATTTTGTTCCTCGCACATTTTAG TTTTTGCAGTTGATGGTGCATGCCTTTAAACGCTGTGTGTCTTCAGTTTGTTTACCAATTTTAGCTCTACTTGCATATTT TATGTTGGAGTGATTATTTCTTTTCTATCACAATCATATCTCCCATTTATCCATTCTGAGCTGTTGGATGAAATCATGTT TTGAATTTCGATTCAGAGAATTAATTTGACACTTCTTATCTTTAGCCAACAGCTGGAAGTGACTAATTGCAGTGCCCAAC TGTTAAAAGTCCAGATCGGTATTTTATCTCTATTTAAG
CDS sequence (LotjaGi5g1v0309000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAGCAAAGGAAACCATGATGAAGAGGAGGCAGAGGCAACCATCTTCGCGACGATGTTTGCCGGTTTTACCGGAGGA GATGATTTCCGAGGTCCTTTCTAGGGTTCCGGTGAGGCCCCTTCTGCGATTCAGGTGCGTCTGCAAATCATGGAAAACCC TAATTTCCAGTCCCCAATTCGTCAAGAACTACTCTCGCATCTCATGCTCCGACCAACGATTGGCCTGTATGACTCACACT GATTGGAGAGAAATAACAACATGTTCTTTGCAGTCACTGTGCGAAAGCCAAAACGACCTAATAGCCCCTTCGGAAACCTC TAGCTTCAGGGTGGAACGCAGGTATAATCTTATTTTAGGGTCATGCAATGGGTTGCTGTGTTTATGTGATGATTTAGGTT TTTTCAAATTGAGGAACCCTTTTACCAAATTGGCATCCAAAAGATCGCCACTTCTTGGTCTCATGAATCAGCGGATCCCA ATGACAATGGCAATGTATGGTTTCGGTTATGATCAAGTTAACAACAAGTACAAAGTGCTAATTACTTATGATTTTATCAC CAAACTCCATACCTTTGGTACTAAATCTTGGACAACAATTCAGACTTTCCCGCCTTGTGAACCACCGCTGCATTGGTGGG ATAGAGTAGGAAAATTTGTGAGTAGTGGTAGTGGTACTCTTAATTGGTTGGTTGGAGAAAGAGATCGTATTATTTCCTTT GATCTGGAGAAGGAGACTTATGGTGAAGTATTGCTACCTCTTGCTCACCATGTGGATCGTGACCTCCCCAACAATATTGA AGTCTTGAACAATTGTCTTTGTTTGTGTTACTTAAATGATATGCATTGTGTTCTGTGGTTGATGAATATGTATGGCATTC AAGAGTCTTGGACTAAATTGATTTTGATCCCTCGTTGCAAGATTCCAGGGCCCATTGGTGTTTTTCTTCACATTCGCCCC TTGTGCATTTCAGAAAATGGCTTAGTTTTGATGGAGGTGGATTATGATCGTCTCTACTTACAATTAGTCACGTATAACGC ATTGAATGGCAAGTTGGATTATCCTAAGATCATGAGGCCGGGTAGTTGGCATTATATGCATATTTACCATGAGAGTTCAG TTTCACCATTGTAG
Protein sequence (LotjaGi5g1v0309000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAKETMMKRRQRQPSSRRCLPVLPEEMISEVLSRVPVRPLLRFRCVCKSWKTLISSPQFVKNYSRISCSDQRLACMTHT DWREITTCSLQSLCESQNDLIAPSETSSFRVERRYNLILGSCNGLLCLCDDLGFFKLRNPFTKLASKRSPLLGLMNQRIP MTMAMYGFGYDQVNNKYKVLITYDFITKLHTFGTKSWTTIQTFPPCEPPLHWWDRVGKFVSSGSGTLNWLVGERDRIISF DLEKETYGEVLLPLAHHVDRDLPNNIEVLNNCLCLCYLNDMHCVLWLMNMYGIQESWTKLILIPRCKIPGPIGVFLHIRP LCISENGLVLMEVDYDRLYLQLVTYNALNGKLDYPKIMRPGSWHYMHIYHESSVSPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 98 | 94 | 1.5E-9 | – | |
| PANTHER | 14 | 333 | 320 | 4.1E-39 | – | |
| PANTHER | 14 | 333 | 320 | 4.1E-39 | – | |
| SUPERFAMILY | 14 | 86 | 73 | 6.54E-15 | ||
| ProSiteProfiles | 18 | 67 | 50 | 11.458 | ||
| Pfam | 22 | 65 | 44 | 2.8E-9 | ||
| SMART | 24 | 64 | 41 | 6.2E-10 | ||
| TIGRFAM | 121 | 307 | 187 | 5.9E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0309000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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