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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0310900 |
| Transcript ID | LotjaGi5g1v0310900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin canalization protein (DUF828); TAIR: AT3G22810.1 auxin canalization protein (DUF828); Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|A0A061EN43|A0A061EN43_THECC Emb:CAB10253.1 isoform 1; Found in the gene: LotjaGi5g1v0310900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62885018..62889223) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTATGATGATTACCATCAAAATCAAATCATCTAATTCTGTTCCTTTTTGTGTTTTATGGTTCATCACTTCATCACA TTTTGTTTGTTTCTTAGTTTATGCAAAATATTTGACCTTTTTTCAAGACTGAGACTGACACACCATACCATTACGATCGG CTGCTTTGTCCCTCTTGTATTCATTCCACCCTCTGCCCTCTGCTCTGCTTTTTCCATTCCCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTATAAAGCACACACCCCACACTTTCACTGGACACCATTTTCTCACTCTTTCAACTCTTCACCTTTCTCTGT TTCTCTCTGCATTTCTCAAACCCAAATGGACAAGGCACAAACCGAACCATGGCGACCCGACCCACTTCACATGTTCCGGC CACCGGAGACACCGCGTGAGTCGATGGAGTTCCTCTCTCGTTCATGGAGCGTCTCAGCTATGGAGGTCTCCAAGGCTCTG TCTCCAGCAACTTCCAAAGCGGCACCAAATGTCACCGGCGGCGTTTCGATACAGGAGGACGTAGCCGGCGAAGTTGAAGA AGCTGCCACTGTTTCCGGACACCCTTTTTCCTTTGCTTCCTCTGAGACCTCTCAGATGGTCATGGAACGCATCCTGTCAC AATCTGTAAGTCCATTTCCAAAACAAAAACAGAGCATCCATAGAAAAAAAAAAAAAGAACTCACTCTTGTTGCTTTCTGT GTCAGATTGAATCCATTTCCTGCAAATGGAAACCACCTGAAATGGACTCTCTGTTGTCTATTTTTGTTTTCTGATTTGGT TTTTAGCTTCCTTTGTCTTCTTCCTTGGCCTTATTCTACTGTCACCATGCTTGTTCTGTTGTCCTTTACTCTGTTTTTCA AAAACAGAGGATTATATTGGTTCATCAAACATCACCACCTTTGTTTTATTGTTCAGCAGGAGGTATCTTCTCCACGAACC TCAGGGAGGCTCTCTCACAGTAGTGGCCCTCTGAACGGAAATCAAAGCTGTGGTTCCGATAGCCCCCCTGTTTCACCCTC TGAAATCGATGATATCAAGGTATGTGCATGTTTATGTTACTACTATCAAGGTCTTTCCCTTTTCAACTTTTCGGCTACAA AGCACCATGACTGCTCACACAGAACCTAGCATTTCCATACCCTTCATCACCTTTTTCAATAACCAAAGCCTTCTTTAATT TCAACACACCCACACACAACAACAATAATAATAATACCATGTTTCTCTTTGCAGTTTTTGATGCTTCCTATGCTAAATTT CAGAAACAAACAACATAGAAACTAGTAATTTATTAATCTCTTTACTGACACTTACCTAGTAGTATTAAACAATTCCATAA ATTAAGCCTTAATTTAATAAAAACCGTGTGAAAGTGAAGTTAAGCTTGTAAATTTTTTTGGTGTTGGATTTAGACCTTCT ATTTTTAGAGACTCGTGGGATCGTTTGGTTCCATTGGTTACCTGGTCCCCTCATCCTGTCAATTTTGTTAGAGTACCACC TAATAACTGTCCTTACAAGTCCCATTTTAGCATGACACAGCATCAAAATTCGGTCTTCTTGTGATGCTGCATTAATGGCT GAAGAAAAATGTCCATGGTGGTTTAGCCTAGGCGTGGCAATGTGGCTAAGGTTATCATTCTCTTTGTTGTTATCGAAGTA GTTACAGCGTAGAAACAATTTTGATGTGTTTTACTTTTTCTGGCACAAAAGGAAAATAGGTGGTAGAATCATAGAACAAG CGTGTGTTGTACACGGTTTAATGAGTTTGGTGTCCTGTGTTGTTCTGTTTTGAACCCCGAAATGCTTCCTGTGCAATCCC CTCTGCAGTTTTGCCGTGTCAACAACAGCAGCAGCGGTAATTTCAGGGCTGCCGTGGCCGCTGCTGCGGGGCCTGGTGGT GTCGGCGGCAGCAAGACGGTAGGGAGGTGGCTCAAGGATAGGAAGGAGAAGAAGAAAGAGGAAACCAGGGCCCACAATGC TCAGCTCCATGCGGCTGTTTCAGTTGCCGGTCTTGCCGCTGCGGTTGCGGCTATCGCTGCTGCCACGGCTGCCTCGTCGG CGTCCACCAAGGATGAGCATATGGCGAAGACCGATATGGCGGTGGCTTCTGCGGCAACCCTTGTGGCGGCCCAGTGTGTG GAGGCAGCAGAGGCCTTAGGGGTGGAGCGTGAGCACCTCGCCTCGGTGGTCAGCTCCGCCGTCAATGTTAGATCAGCCGG TGATATCATGACTTTAACTGCAGCAGCAGCTACAGGTATATTTGATGTTGATGCATGGTGAATGTTTTTAGGAATATTCC AATTGTTTGTTGAAAATTTTGTATCTTGACTTGCGTGGATATCTTTTGTGGTGTGAAATTGAATTGCAGCTTTGCGTGGG GCTGCAACATTAAAAGCTAGGGCCTTGAAGGATGTTTGGAATATTGCAGCTGTTATTCCTGTGGAGAAGAATTTAGGGGG TGGTGGTAGTGGGAATAGTGGTAGCAATGGAAGTTCTAATAGTAGTTTCAGTGGTGAGCTTCCCCTAGAGGAGAATTTCT TGGGTATTTGTAGTAGAGAATTGCTAGCCAGAGGTGGTGATCTTCTCAAGCGCACACGCAAAGGTATAGTTTCTGCAATT TACCTTCCTACATGTCCTAAGATATTTGTGAAGCTAGAATTAATACTGGTGAGAGCTTCTGAATTTTATAATTGATTCTG AGGATAGAGTAACCCATCCAAACATGATATGGATGTGTTTCTATGGTCTTGTGATTGTTTGCTTGGCAAGGTTCTGTTTG TCTGTGTAGGAAAAGAAATTTCTAACTTTTCCCTAGTCCTCCATTGTTTAAGGGTATGATTATTTGAATGTGAGCTGATC TGAGAATTTTGTGCAGGTGATCTTCATTGGAAAGTTGTATCTGTGTATATAAACAAAATGAATCAGGTGTGTTGTGTTTC CCCCCTCTCTATTCCATTATGTTGATTGTAGATGATAATCAGTCACTTAATTATTTGGGCATCAATTAGAGGATAATGAT GGGTTTAAATCTGATTATGAAAAGGTTATGTGGTGGGGCTTTTAGTATGATGATGTGAAGGTATCAACTTATTTTACTAT CTTAGAAAACTGCAATCTTTACCCTTTGGAGCTTCTTTTTGTGAAGGTTACTGTGAAAATGAAGAGCAAGCATGTTGCTG GGACCTTCACCAAAAAGAAAAAGAGTGAGTGTTGATAACTTTTGTCTTGCTCTTAACTAATTATTTGACAACAGATTTGG AGGTGGGTCTTGTTTCATATAGGGATTTGTGAAAGTCATAGCCACTACTAAAGATGGAAAAAAATTAATCAAAAGGGTTG TTCTTCTTTAATCCCATACTTTCTTTTTGAATTTACAGATGTGGTGATTGAAGTGATCAAAGATATGCCTGCCTGGCCCG GCCGCCACTTGCTGGAAGGCGGTGAGAATCGTCGCTACTTTGGGCTTAAAACTGTGACGCGCGGTGTTGTTGAGTTTGAG TGCGTAAATCAGAGGGAGTATGATGTTTGGACTCAGGGCGTGACTCGGCTTCTTTCCATTGCTGCAGAAAAGAACAACAG AAACAGAATATGAGCTTCTGTTAGATTGTGAAGTAGAAACACGTTTTGGCAATAGGGAAAATATAGGATCAATGGTGCTC TCTACACTGTGGATCTTTTTGACACATGGTGGGGTTTTGGTCATTGTAAAAAGGGTAAACTAAAGGCAAAGTTATGTCAG ATGGGGGTGACTTTAACCTAGGGGAAAATGTATATGGGGATTTGAATGATGTAATTTTTTGAATGCTAAGTGATTGAACC AAAGTGAGCCATGATCCTTTTGTTCTTTTCACTGTTTTGGAAAGGAAATGAGTACCTAGGACTGGGGGGCCAGTCAAAAA AGAATTGGAAAGAATCATGTTGGAGGGGATGCATAAATTTGAAGACAAATAAACCCTGTTATTCTATTTGTGTTGTGTGT ACATTTAGGTTTTGAGCTTGTAAAAAAGTGGTCAAAAGTGTAGATTTTCATGTGATTTAGAATAAACAATTAGGAGGTTA GGCTCCCCATTGGATCTCTGGAAAACTATATTCTCTTGCATGTCAAGAGTCATCATTGTCCTGCACATCCACTTTGTGTT CTTTATCTTTAAATATGTGCATAACAGAATGTTTTATAAGTTTTCA
CDS sequence (LotjaGi5g1v0310900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTGTGCAATCCCCTCTGCAGTTTTGCCGTGTCAACAACAGCAGCAGCGGTAATTTCAGGGCTGCCGTGGCCGC TGCTGCGGGGCCTGGTGGTGTCGGCGGCAGCAAGACGGTAGGGAGGTGGCTCAAGGATAGGAAGGAGAAGAAGAAAGAGG AAACCAGGGCCCACAATGCTCAGCTCCATGCGGCTGTTTCAGTTGCCGGTCTTGCCGCTGCGGTTGCGGCTATCGCTGCT GCCACGGCTGCCTCGTCGGCGTCCACCAAGGATGAGCATATGGCGAAGACCGATATGGCGGTGGCTTCTGCGGCAACCCT TGTGGCGGCCCAGTGTGTGGAGGCAGCAGAGGCCTTAGGGGTGGAGCGTGAGCACCTCGCCTCGGTGGTCAGCTCCGCCG TCAATGTTAGATCAGCCGGTGATATCATGACTTTAACTGCAGCAGCAGCTACAGCTTTGCGTGGGGCTGCAACATTAAAA GCTAGGGCCTTGAAGGATGTTTGGAATATTGCAGCTGTTATTCCTGTGGAGAAGAATTTAGGGGGTGGTGGTAGTGGGAA TAGTGGTAGCAATGGAAGTTCTAATAGTAGTTTCAGTGGTGAGCTTCCCCTAGAGGAGAATTTCTTGGGTATTTGTAGTA GAGAATTGCTAGCCAGAGGTGGTGATCTTCTCAAGCGCACACGCAAAGGTGATCTTCATTGGAAAGTTGTATCTGTGTAT ATAAACAAAATGAATCAGGTTACTGTGAAAATGAAGAGCAAGCATGTTGCTGGGACCTTCACCAAAAAGAAAAAGAATGT GGTGATTGAAGTGATCAAAGATATGCCTGCCTGGCCCGGCCGCCACTTGCTGGAAGGCGGTGAGAATCGTCGCTACTTTG GGCTTAAAACTGTGACGCGCGGTGTTGTTGAGTTTGAGTGCGTAAATCAGAGGGAGTATGATGTTTGGACTCAGGGCGTG ACTCGGCTTCTTTCCATTGCTGCAGAAAAGAACAACAGAAACAGAATATGA
Protein sequence (LotjaGi5g1v0310900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPVQSPLQFCRVNNSSSGNFRAAVAAAAGPGGVGGSKTVGRWLKDRKEKKKEETRAHNAQLHAAVSVAGLAAAVAAIAA ATAASSASTKDEHMAKTDMAVASAATLVAAQCVEAAEALGVEREHLASVVSSAVNVRSAGDIMTLTAAAATALRGAATLK ARALKDVWNIAAVIPVEKNLGGGGSGNSGSNGSSNSSFSGELPLEENFLGICSRELLARGGDLLKRTRKGDLHWKVVSVY INKMNQVTVKMKSKHVAGTFTKKKKNVVIEVIKDMPAWPGRHLLEGGENRRYFGLKTVTRGVVEFECVNQREYDVWTQGV TRLLSIAAEKNNRNRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 8 | 336 | 329 | 1.1E-189 | – | |
| Pfam | 8 | 179 | 172 | 1.5E-73 | ||
| PANTHER | 8 | 336 | 329 | 1.1E-189 | ||
| Phobius | 20 | 41 | 22 | - | – | |
| Phobius | 42 | 61 | 20 | - | – | |
| Phobius | 62 | 84 | 23 | - | – | |
| Phobius | 85 | 336 | 252 | - | – | |
| Pfam | 222 | 326 | 105 | 1.4E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0310900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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