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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0315400 |
| Transcript ID | LotjaGi5g1v0315400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT5G26340.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q94AZ2|STP13_ARATH Sugar transport protein 13; TrEMBL-Plants: tr|A0A1J7FTV4|A0A1J7FTV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0315400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63349816..63352435) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTTCTTATCTTGAAAATTTTATCTTCATTCAATGTCCTCGTCACCGACACCTTTGAATTCCCGCAAAAAAATGTATG CCATGGATTGAATATGGTAATTGAGGCTAAAATAACCTTTGTTGTAGCTATATATATTCATGCACAAAGCAAAGCGTAGC ACAGATCTCTCCAGCAATTTGATAAGTTAGCAATCATGGCGGCCGGAGGATTTTCAACGGCGGCCGGGGAAACCCAATTT GAGGCAAGGATCACATTAACGGTCATAGTATCTTGCATAATGGCCGCCACCGGCGGCCTTATGTTTGGTTATGATGTTGG AATTTCAGGTACACACACGATCATCTCATGTCACATGACACATGAAGCTTGTGTCTATATATTAGTCACACTTTTAATTA AATTAGCATTGTTAATAGCATTTGAACAAATGCAGGTGGTGTGACATCAATGCCCAGTTTTTTGCAAAGGTTCTTCCCAG AAGTATACATAAGGACACAGCAACATGGGGAAGAAAGCAACTACTGCAAATATGACAATCAAAACCTTCAGTTGTTCACA TCCTCTCTCTACCTTGCAGCTTTGGTAGCCGCCATGGTAGCCTCCACGATCACAAGAAAGCTAGGCCGCAAGCTAACTAT GTTGATTGCTGGGGTTTTCTTCATTGTTGGCACAGTCTTGAATGCGTTGGCAAATAGCCTTATCATCCTCATTATTGGCA GGATCATACTGGGTTTCGGTGTTGGTTTCGCAAATCAGGTCCTTATAAATTGTTTTGTGTACAATGAATTTCAGACATTG TTTTTTCATTCCTTTAACATGTTTCTGATTCATGATTAATTCTGTTTTTCACAACAGGCTGTGCCAGTGTTTCTTTCTGA GATTGCTCCCACCAGAATTCGTGGTGCACTCAACATTCTCTTCCAGTTGAATGTCACCATTGGAATTCTCATTGCAAACC TTGTTAACTGGTTTGTTGCAAAGTAAGTTTAATTGGTGTAAAGATTTATGTTTGATTTTTTAAAAAATAAACCAAATCAT AATGAGCGTTATTTTGATTGTTCAATTAAGTTTTTTTTGAATAGATTGTAATTAATGTATGTGTGAATTGGGAAATAGGA TTGAAGGTGGATATGGGTGGAGAATATCACTAGCTTTGGCTGGGGTTCCTGCACTTATGCTAACATTGGGGGCCCTCATA GTGGATGACACTCCCAACAGTCTTATTGAAAGGGGTAGAGAAGATGAAGGGAAGGCTGTACTTAAGAAGATTCGTGGTGT GGAAAATGTTGATCCAGAGTTTGAGGATATCCTCAGAGCCAGTAAAGTGGCTAAAGAGGTCAAGAGTCCCTTCAGAGACC TTCTCAAGCGTCACAACCGTCCTCCACTAGTCATCGCTGTCATGATGCAAGTAAGTTCTCTTAGCAATCTTTCTACAATT GATTATGAAGTCATGACTCACGAGTAATTATTGAGAAATTGATTTTAATTTTCATTGTGAATAGATCTTCCAACAATTCA CCGGAATCAACGCGATCATGTTCTACGCCCCGGTGTTGTTCAACACTCTTGGATTCAAAAGTGATGCTTCTTTGTACTCA GCTGTGATCACAGGAGCAGTGAATGTCCTCTCCACATTGGTATCCGTCTATTGTGTGGACAAAGCAGGGAGAAGGATTCT GCTATTGGAAGCATGTGCCCAAATGTTTCTCTCTCAGATGGTGATTGCTATAGTGCTCGGAGTGAAAGTGGGAGATTACT CAAACAGTTTAGGAAAGGGTTTTGCTGTCTTGGTGGTGATAATGGTGTGCACATTTGTGTCGTCTTTCGCGTGGTCATGG GGACCACTCGGGTGGTTGATTCCCAGTGAGACTTTTCCCCTCGAGACTCGATCTGCTGGGCAGAGTATTACCGTGTTCGT CAACATGCTTTGCACCTTCATCATTGCTCAGGCTTTCTTGTCCATGATGTGCCACATGAAGTTTGGAATTTTCTTGTTTT TCTCTGCCTGGGTGGTGGTGATGGGTTTGTTCACAATGTTCCTCATTCCAGAGACAAAGAATGTCCCCATTGAAGACATG AATGAGAAAGTCTGGAGTCAGCATTGGTTCTGGAAGACTTATATGGATGATTAGATTCAAAGACCATATGCATTTGGAAG TTCATAACTATGAATTTCCCATTGTAATTACTCTTTTTGGCACACATCTCACTCTCATCCAACAATGTCCATATTAGCGT TACAAAATTGTAAAGTGTTAATTGTTTAACACTCCAATTTTGCATATCTATTTTTGATGTACATCACATGATTCACATCT CATTTCCATTTTCTTTCTTTCTGCTCTTATATCTCAATTAAATTCTTTTCAAATCATATATCATCTCTTATATTTGTAAG TACAAGTGTGAACAAAATTCTATAGATGTATTTTATACCTTTTCCTAGGTGTAATTATATATAAATGAAACACTCTTACT TGTATATTCTTTTATTTCTGAGTAAACTGTTGTGGTTTGCAATGTTTTACTAGTACATTGTAGCGTGTGGAATCGTTATA CTGGGAATTGTTTTTTTTTTTTGAGAGTATAAGGTCCTTGTCATTAATCATGCAAAGTAG
CDS sequence (LotjaGi5g1v0315400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCGGAGGATTTTCAACGGCGGCCGGGGAAACCCAATTTGAGGCAAGGATCACATTAACGGTCATAGTATCTTG CATAATGGCCGCCACCGGCGGCCTTATGTTTGGTTATGATGTTGGAATTTCAGGTGGTGTGACATCAATGCCCAGTTTTT TGCAAAGGTTCTTCCCAGAAGTATACATAAGGACACAGCAACATGGGGAAGAAAGCAACTACTGCAAATATGACAATCAA AACCTTCAGTTGTTCACATCCTCTCTCTACCTTGCAGCTTTGGTAGCCGCCATGGTAGCCTCCACGATCACAAGAAAGCT AGGCCGCAAGCTAACTATGTTGATTGCTGGGGTTTTCTTCATTGTTGGCACAGTCTTGAATGCGTTGGCAAATAGCCTTA TCATCCTCATTATTGGCAGGATCATACTGGGTTTCGGTGTTGGTTTCGCAAATCAGGCTGTGCCAGTGTTTCTTTCTGAG ATTGCTCCCACCAGAATTCGTGGTGCACTCAACATTCTCTTCCAGTTGAATGTCACCATTGGAATTCTCATTGCAAACCT TGTTAACTGGTTTGTTGCAAAGATTGAAGGTGGATATGGGTGGAGAATATCACTAGCTTTGGCTGGGGTTCCTGCACTTA TGCTAACATTGGGGGCCCTCATAGTGGATGACACTCCCAACAGTCTTATTGAAAGGGGTAGAGAAGATGAAGGGAAGGCT GTACTTAAGAAGATTCGTGGTGTGGAAAATGTTGATCCAGAGTTTGAGGATATCCTCAGAGCCAGTAAAGTGGCTAAAGA GGTCAAGAGTCCCTTCAGAGACCTTCTCAAGCGTCACAACCGTCCTCCACTAGTCATCGCTGTCATGATGCAAATCTTCC AACAATTCACCGGAATCAACGCGATCATGTTCTACGCCCCGGTGTTGTTCAACACTCTTGGATTCAAAAGTGATGCTTCT TTGTACTCAGCTGTGATCACAGGAGCAGTGAATGTCCTCTCCACATTGGTATCCGTCTATTGTGTGGACAAAGCAGGGAG AAGGATTCTGCTATTGGAAGCATGTGCCCAAATGTTTCTCTCTCAGATGGTGATTGCTATAGTGCTCGGAGTGAAAGTGG GAGATTACTCAAACAGTTTAGGAAAGGGTTTTGCTGTCTTGGTGGTGATAATGGTGTGCACATTTGTGTCGTCTTTCGCG TGGTCATGGGGACCACTCGGGTGGTTGATTCCCAGTGAGACTTTTCCCCTCGAGACTCGATCTGCTGGGCAGAGTATTAC CGTGTTCGTCAACATGCTTTGCACCTTCATCATTGCTCAGGCTTTCTTGTCCATGATGTGCCACATGAAGTTTGGAATTT TCTTGTTTTTCTCTGCCTGGGTGGTGGTGATGGGTTTGTTCACAATGTTCCTCATTCCAGAGACAAAGAATGTCCCCATT GAAGACATGAATGAGAAAGTCTGGAGTCAGCATTGGTTCTGGAAGACTTATATGGATGATTAG
Protein sequence (LotjaGi5g1v0315400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGGFSTAAGETQFEARITLTVIVSCIMAATGGLMFGYDVGISGGVTSMPSFLQRFFPEVYIRTQQHGEESNYCKYDNQ NLQLFTSSLYLAALVAAMVASTITRKLGRKLTMLIAGVFFIVGTVLNALANSLIILIIGRIILGFGVGFANQAVPVFLSE IAPTRIRGALNILFQLNVTIGILIANLVNWFVAKIEGGYGWRISLALAGVPALMLTLGALIVDDTPNSLIERGREDEGKA VLKKIRGVENVDPEFEDILRASKVAKEVKSPFRDLLKRHNRPPLVIAVMMQIFQQFTGINAIMFYAPVLFNTLGFKSDAS LYSAVITGAVNVLSTLVSVYCVDKAGRRILLLEACAQMFLSQMVIAIVLGVKVGDYSNSLGKGFAVLVVIMVCTFVSSFA WSWGPLGWLIPSETFPLETRSAGQSITVFVNMLCTFIIAQAFLSMMCHMKFGIFLFFSAWVVVMGLFTMFLIPETKNVPI EDMNEKVWSQHWFWKTYMDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 7 | 497 | 491 | 1.6E-275 | – | |
| PANTHER | 7 | 497 | 491 | 1.6E-275 | – | |
| Gene3D | 15 | 488 | 474 | 5.3E-123 | – | |
| TIGRFAM | 21 | 482 | 462 | 9.3E-115 | ||
| Phobius | 21 | 39 | 19 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| ProSiteProfiles | 26 | 476 | 451 | 50.064 | ||
| Pfam | 27 | 485 | 459 | 7.6E-124 | ||
| SUPERFAMILY | 28 | 485 | 458 | 1.07E-60 | ||
| CDD | 29 | 474 | 446 | 0.0 | – | |
| PRINTS | 34 | 44 | 11 | 7.4E-32 | ||
| Phobius | 40 | 81 | 42 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 82 | 104 | 23 | - | – | |
| Phobius | 105 | 110 | 6 | - | – | |
| TMHMM | 111 | 130 | 20 | - | – | |
| Phobius | 111 | 129 | 19 | - | – | |
| Phobius | 130 | 134 | 5 | - | – | |
| Phobius | 135 | 158 | 24 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| PRINTS | 137 | 156 | 20 | 7.4E-32 | ||
| ProSitePatterns | 142 | 167 | 26 | - | ||
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 193 | 24 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 194 | 198 | 5 | - | – | |
| Phobius | 199 | 222 | 24 | - | – | |
| TMHMM | 203 | 222 | 20 | - | – | |
| Phobius | 223 | 283 | 61 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 284 | 308 | 25 | - | – | |
| PRINTS | 294 | 304 | 11 | 7.4E-32 | ||
| Phobius | 309 | 319 | 11 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 320 | 342 | 23 | - | – | |
| ProSitePatterns | 338 | 354 | 17 | - | ||
| Phobius | 343 | 348 | 6 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 349 | 371 | 23 | - | – | |
| Phobius | 372 | 382 | 11 | - | – | |
| Phobius | 383 | 404 | 22 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| PRINTS | 389 | 410 | 22 | 7.4E-32 | ||
| Phobius | 405 | 424 | 20 | - | – | |
| PRINTS | 412 | 424 | 13 | 7.4E-32 | ||
| TMHMM | 421 | 443 | 23 | - | – | |
| Phobius | 425 | 445 | 21 | - | – | |
| Phobius | 446 | 450 | 5 | - | – | |
| Phobius | 451 | 472 | 22 | - | – | |
| TMHMM | 453 | 472 | 20 | - | – | |
| Phobius | 473 | 500 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0315400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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