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LotjaGi5g1v0315700.5

Overview

Field Value
Gene ID LotjaGi5g1v0315700
Transcript ID LotjaGi5g1v0315700.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Long-chain acyl-CoA synthetase; TAIR: AT3G05970.1 long-chain acyl-CoA synthetase 6; Swiss-Prot: sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal; TrEMBL-Plants: tr|G7ID84|G7ID84_MEDTR Long chain acyl-CoA synthetase 7, peroxisomal protein; Found in the gene: LotjaGi5g1v0315700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:63365096..63373512) extracted from Lotus japonicus Gifu genome v1.2.

TCGGATTCACCTTACAATTTTTGGAGACAGTGAATGGTGCTAAGATTCAAATTGGAGTGTCAATTGTCATTATTTAGTTA CACGTTCTGTAGTTTTTGAATTTGAGAAAAAGAGTTTAGAAATGGCAAACTGGGTTAGTTCTACTCATAATGCTTCGATT TGTTGAACTTTCATCACGACTATTGAATTTATGCATGGCTTAATAATAATGGTATGGTATTATTACCTTACCCTATCCCC TTCTTGCAATTACTTTCTTTGTCAGCCATTTTATTGATATCTTTAGTTTTGATCTTTACTTCTGAGCAGAACAAGGGTAT AGTGTTGTACTCCCAGAGAAATTGCACACAGGAAAGTGGAACGTGTATAGGTATATACCTTTTGCAATATATTTTATTTC AGTTGTCATTTACTACAATTTTAGGGCCTAGTGTCTGATATTGTTTGAATTCCTTTTGGCAGATCTGCACGTTCTCCGCT GAAACTAATGAACAGGTTCCCTGATCATCCTGAAATTGGTACACTGCATGAAAATTTTGTGTGAGCATTCTCCTTTTACT CTGCAAAATTTTATTTATTTTGAACTTCATAAGATCAATGAGTAATCTTAAATGAGCAAAACGTTACTGAGAATTCAATT TACTTTTCGTGCCTAAGAAATTGATATATAATGTCAAACTCTGTAAAAATAGCCGTGCAGTTGACACTTTTCGAGACTAC AAATATCTGGGAACCCGTGTTCGTGTTGATGGAACAGTTGGAGAGTAAGCATCTCAATTATTAACCTATGAGGCTTTCTG GGCTCTTTTATTTCCATTCAAATTTATTTTACGCACTTCATTATTTCCATTCTTCCTGGACTCTGCAGGTACAAATGGAT GACATATGGAGAAGCAGGTGCTGCCCGGTCAGCAATAGGCTCTGGTTTGATTCATTATGGAGTCCCAAAGGTGGGGGCTA AATTTCTTACATTTTTTTTTTATTTTACTTTTCACATGAGTCATGACATCATGTAACCATTGATTTACATATTCATTTAC AGGGTTCCAGCATAGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTGTGCGTATTCATAC GTATCAGTTCCTTTATACGATACTCTTGGTATGGTGCCTATCATTTATGAAGGATTTTTTTTTCTTTCATATTAAACATA GCCTAACCTTTAGATTTAACAGGAAGAAATTGCTTGCTCTGTAGGTCCTGATGCTGTCAAGTATATTGCTAATCATGCTC TTGTGCAAGTTATATTTTGCGTGTCTCAAACATTAAATTCAGTAAGTATATGCAAGCTTCAACGTAAAACTTTATATAGC ATATCCCTTATGTTAACTTCGTATTGAATACTGTTGAATCATCATTCGCCTTTTTGATGACTTAAGTGTGATGCAACTGC AAATACGCAACATTGAGCATACTTATTCCTAAGTGTAATATAAAGTGTCTGTGATTACAAGTTGGTGTATCATTTAAAAG CTTGTAAGTAAAAATTTTGCGGATCATAATTAGCATAATTGCCGAATGAGGAATGAGGATGATAACATTTAATTTTGGAG GGACAGCAGAAGAGTTTTCGTTATCTATTTTGTAATTAGCATCAACTTATTGGTTATGCTATGATAAAATAAAGAAAAAT ATAGCCCTATTCTTGTCCACTTCTGTTTATATCTTTAACTAGCGTATTAAATATACAATGTTTAATGCTTATAAAAAAAA ATATACAATGTTTAATCTTCTTTTTCAAAATTTATGTATCTTGTCATCTTGCCTCGCAGTTGCTGAGCTACTTGTCTGAC CTTCCAACTGTCCGTCTAATTGTGGTATGTGTGAATTTATGGCTTACGTTCACAATTAAATGTTCATTCATGAAGTCCAT GCTGATTTTTCATAAGTATACAGGTAGTTGGAGGTATGGATGATCAAATTCCATCGCTTCCATCATCAGCTGGTGTTCAG GTTATTACATATTCAAAGCTGCTTAGTCAGGTAATCAATTGTATCTGCCAAAGAATGTGGATATTGTGGAGCAGTACATA ATGTGTTCACTATATTATATGTTTTGAAGAATTAATTAAGAAGTGTCACTTATGTTGTGCTCTTTCTAACTATTTACTGT GATCAATTAGTTCTAAGTTTCTTTTGTAAATGGCTAAATGGTGTTGCAATTGATATGATCTGCTGGTATTTATAACTGTT AACTTATTGTTTTGTGGTTTGGATTTAGGGGAACAGCAATCTCCAACCCTTTTGCCCTTCAAAACCTAGTGATGTTGTAA CGATTTGCTATACTAGTGGTACAACTGGAACCCCAAAGGTGCGTAAGTCTCTATAAAATTATGGTTTACCTTTCTTGGTG GTATATTATTCCCCTAAAATGCTCTCTTTACATATAGTAGCTTATTTTCATATTTCTACTCAACAAATTCTGAACAGGGT GCTGTCTTGTCCAATGAAAACTTCATTGCAAATGTTGCTGGATCCTCTTTAGATGAAAAATTCGGCCCTTCTGATATGTG AGTTTTTTCTAAATGTATCCAATAGTCATTGCCGTTCTTTTTCTATGATAGTTTATTCTAATGTCTTTACCTTAGTTTCT TTTGATTTTCAGTTATATATCTTATCTCCCTTTGGCACACATATATGAGCGAGCAAACCAGGTCTTGAATGTATATTTTG GCATTGCAGTGGGATTCTACCAGGGGGTGTGTGTCTTAAACAACATTGACTTCTCTCTTCCTTACATATATATGTCTACT AGTTTTGAATGAGCTTATACTATTCTGAAAATCAGTATTGTAATTTCCGCTTTAGATTTGCTTTGATTTGATCTGGTGCT TATAGCTATTTAGATTTTAAATAAGAGAGAAATAGAGGTTTCTCTGACATTATACTGTGGTATAAGGAGCCCATATAATT TTTTGTCAGGCTAACATATTCACATTTACATACTCTCCAGTTCAATAAATGCATTGGTTAGCTGCTATACAAATAACACT GTTTTATAATAGTTTAGTATCCTTCAGTTCTGGATGGAGTTTTTATACTCCACATCCGGATTGTGAATGCAATCTAGAAT GTAAATTTTCTGAATAAAAGCTGCCTCTTTCTGCTTATCTGGTAATTTAATCTGGTTATGTAATATGCTTTAGTTTGTCG TGCTAATTTGTCAAGCCAAGGTGCTACCTTGTATAATGTAGTAACAGAGATTTTAAAATGGTTAATTTTGTTTCACTATA CCCTGTAATATTTTCATATAAGCCTGATATTTTATTTTTATTGGATGCAGGATAATATGAAATTAATGGATGACCTAGCT GCTCTAAGACCTACTATCTTCTGTAGTGTTCCTCGCCTATATAATAGAATATATGCTGGGTAGAATAATCAACACTTATA CTGTAATTTTTGAACTGTTCATTAACTTCCTGTATATTAATTGTGCTATTCAATTGGATTTTTATGGCAGAATTATCAAT GCTGTTAAAACTTCTGGTGGTCTGAGGGAGAGGATATTTAATGCTGCCTACAATGCTAAAAGACAGGCACTATTGCATGG TAAAAATATATTCACAATAAGTTATCTTTTGCACGGCATATATTCATATAGCTTCTTTTCCTGAATTATTTATTACATTC TGTAACTGTTATGATCACTTTTGTTCCCTAAACATTGACCCTAATAAGTAATAATATTTGCTTTAAACCAATTCTCGTAC TCTTCATTTGCCAGTTGTGGTTATAGACTCTCTATTCTTCTGTGGTAGTGCTATGCTATCAATGGCTGGATTACCTTTTA CAAAGCTCTATTTATTTAGGGGGGGGGGGGAGGGTAGTGGTTGATTGATTCTCATTTTCAAAGAATTTTTTGACTTTTAA AAAGCAGGAATTTGTTCTCTTTGAATCGTACACATAGCTAAAAAGTTGCAACTTCTGGTTTAGGCTTAACAAAATATACT TGATATGGAAGTAAAAGCTGTTGCTAAGCTTGTGTTGTAATTGAGAGCATTATTTTCGATGTTGATAATACATTATTGGT AGTGAAGTACTGATTATGTTTTCGAGAAGTTAGCATTTTTTCGCTTCCATTTTCTGTGTTTCTTGCTTAAAATTTAGGTC ACCTGCAGTCAAACTCATGCTTCTTTGTTCTCAAATTTCAGCCTTAGAATTTAGTAAAATATTATAAATCAACAGCTATG ATATGGCTCTGATTGTGTGAGCAAATTTGATTCTAAGACCAATTCTACTCTCTTACAGAAGTATAAAACAAGTTTATGAC TGATTAGGCATAACTGTACTGTAAAAGTAGTTTGTGCAGTTGTGTACCCATCTTTCCAACTTTCTATGGACAAACAGCTT GAGGCTCAACTTTCTATGTCACAAGTTCCTTATATTTTTCTGACAAAATATCAGTTTTGTAAGAATTCACATTAATAACT TATTAAGAAGGGTTACATTTTTTTATTAAGGTCCTAGATGCTGTGATATGAATCCCATATAGATCAAATTATCATGGTGG GTAATGTTGAGAAGTCCCACATTAACTACGAGATATGGCCAAAATGATTGTTATAAAGAGGAGAGCAACCTCACTGCCTA AGATAGCTTTTGAGGTAGGGTTAGGCCTAACCTAAATTCTAAGATGGCATCAGAGCCTATCCTAGATCCATTCGCAGATG TTCATTCTAGCAAATTCCACGCTCCAGATGTTTAGCCTTGGGCATGAGGAGGTGTGGTGGTGAGAAGTCCAAATGAACTA GAGATATGGCCAAAATGTTCCATATAAAGAGTAGAGCAACCTTCACCCCTAACCCTAAACTTGCTTTTGGAGTATAGTTA AGCTTAACACATTCTAAGAAATATCATATAAAACCATTCATGTGTCTTCTTACTTCCCTTCTCGGAACGGCTAATACTTG GTTCAACTGAGAACTTAAGGCAGAGTTTGGCATACAGATAAACTGGAACGGGGTGGCCTGTTCTGTTTTCTTCTATTGAT TCCACATTTTAACTAGAACCAAATTATAACATTTTTAGATGGTGGTTTGAGCTTTAATTACTTTCTCGTTCTCTCGGCCT CACCCCGAGGACAATGCCTTTGTATTTGCCTGTCTTTGTCTGCCGTAATATTATTGAATTGAAAACTTATTCTCAACATC CATATATTCATTTTATTTCAGGCAAGAACCCATCTCCAATGTGGGACAGATTAGTTTTCAATAAGATAAAGGAAAAGCTT GGAGGACGAGTTCGTCTTATGGTGTCAGGAGCCTCTCCTCTATCACCTGATATCATGGAATTTTTAAAGATGTACGTTTT GCATAACGTTGGTGTAAACATTGCTAAAGAGAATTGTCCTTCTCTTATCATTTTCAATTAATTTTTTCGTGACCAAATGG TGTTTGACATCTATTTAACAGTTGCTTTGGTGGGCGTGTGACTGAAGGATACGGAATGACTGAGACCACTTGTGTTATAA GTTGTATTGATCAGGGTGACAAACTTGGTGGTCATGTTGGCTCTCCTAGCCCAGCCTGTGGTGAGTAATTTGTATAAATT TCACATCACATAACCTTCTGCATATTAATTATCAAGGTAATTTACCAATCAACTTGATCATAAAATGGCCAAACTGTAGT ATTTCCCCTCTTAGTTTTTTTTAATGTCACCCCATTTGTGGTTATTCAAAATGTCACTTAGTACTTTTGACTTCAAGGGC TAGAGTATTTACTTTATTTGATAAGTTGTTTAATTAAAACGTCAACTGAATTCTCATCTGATGCATTTATGCTTCTGCAT CTGCTGAATTTGTAAGTCTAATTTATTCATGCTATTAGGCTTCTGTGGGGAAACTTATCTCATTTTAAAGGACCTAAATT ATCATCTGAATGGCTATGTGTAAGCAATAATAATATTAAAGTGGGATTTGAACACTTTTCTTTCTGTCCCCTCCTAAATT GAAAAGAATGTAAAAGTTGAACCTTTTTTTTTTTCCTTCTTAAGTTTATTTTAGCGCTTGTAATGCCTAGTGACAATAGT TTTGTTCTTTCATCTCAGAGGTAAAACTTGTGGATGTTCCAGAAATGAACTATACATCTGATGATCAGCCCCAGCCCCGT GGTGAAATTTGTGTCAGGGGTCCCATTATTTTTAAAGGATATTACAAAGATGAAGCTCAGACGTAATGGCCTTGCCTGTT CTGTGGTTCTTACAAATGAAATTTACCTTCTCCTGTTTTAAATGACCTTAATTTGACTAAAACTGAGCAGGAGAGAAGTC ATTGATGAAGAGGGATGGCTGCATACAGGAGATATTGGGACATGGTTACCTGGTGGTCGTCTCAAAATTATTGATAGGTG AGATAGCAGTATATCACCATCCTAGTTATTGTCCTAATTTAGCATGAGATACGGCTTCTTAAAGTACCATCTATCACTAA ATTGCTAATTATAACAACCACCACAACCACGAACAAAGCATTTTCCCACTGATTGGGATCGGCTATATGGATTTAAAGAC GTCATAACGTTTTATCATGGACCATGCTTAGTGGTAGACCATTTAAATCGAAATCTATTTTCAATTGATATTATCTTTGT TTAATTCATTTGCCATTGGTGCACTGTTGAACGAGTTTAGTGATACATTAGAGTGAACTTGCTATCTTCCACCTATGCTT TGTTCAGTGAATGATAGTTATAAAACATATAACTGCTTGCTGCCTCCATTTATATATATTCAACTTCAGCAAGATGAGCT AGAAACATGACCCCTAGCTTCCTGTCTACTTTCTCAGCACACCTTGTACAACATTGACTGATTTCATCTAGCTAATGAAT CAAAGCTTTTCATTACATTTTAGGAAAAAGAATATCTTCAAGTTGGCACAAGGCGAGTACATTGCTCCGGAGAAGATTGA AAATGTGTATGTCAAATGCAAATTTGTGGCACAGTGCTTTGTATACGGTAAGGGAAAGAGTCATTCTTCAGTTTGCATGT GTGCCATCTTTTTGTGTCTCTCTTCCTCTATCCCTTTCTAGCTTGCTGATGCTTCTTTATTCTTTTTTGTAGGTGATAGC TTTAATGCTTTTTTGGTAGCTGTTGTCTCGGTGGATCCTGATGTCTTGAAATCGTGGGCGGCTTCAGAAGGCATAATGGT AGAGTAAACTCATTGGTTGTTTTAATCTTATAAAAATCCCCTGACTCTTAAGTTGTTTCATAGACATTTTGCAATTTTGC TAATTGCTAAGTTCACACTGCCTGTTGACTTGGTGATTGAATATGTGGGATTTGGATCCTCTCCATCCAACTTCTGGTGT CTCTCGAAACCATTCAATGAATTGTTATTTTGGTTGATTTACAATTTAGAATATCATGGAGAGCATACCATTCAGGATGG CCAAATGATCATGTGGTTATAAATGCTCCCTCTTCTTACTTATAAATAAATCACTTTCACTTAATTCACATGGATTGAAA ATGGAAAAGTCAAATAAGCTTAAAATATCATCTGAAAGCAATAGAAATGCTACTGACCTTTGATTATTTAATTTCTCTAT TTTCTTCATTCTGAAAATGGAATTCACATCATAACTCCCTCTTTGCAAGTTATTTGGTTGTTCAATTGCTCTGATTTTAT TCTTGTGAAACAAAGACTCCACACAGTTACTCATGCATTCTATGCACCCTGTCTGGCTGTTTCACTGCTTTGAAGTTTTT ATTATGTTAAAGTAAGTTAGGCCTATGTAGTTTTTAAAATCAAGAAGGCTGAATCCTGTATTTTTATCAAAGTTTAAGGG AAGTTTATGAAATTCACTCTAATTATTTGATTTAGCTGCAAAGTATTGGTGCTAATTTATGAAAGCAATCTAATGTGATA ACTGATTCTCTGTTTTGTGGAAATGGGGTTGCAGCATAATGACTTATCACAACTTTGCAATGATCCGAGAGCAAAGGCAA CGGTCATGGCTGACATGGATGCTGTTGGACGAGAGGCTCAGGTAAGTTATTCATGCATGTTACGGCTACCTTGTAAATTG GTGTCATCTTTAATAACAATATTATTAAACGTTTGTATCCTTATTTGATGCCCTGTAGCTAAGAGGTTTTGAATTTGTAA AAGCTATCACTTTGGTGCATGAACCATTTACAATGGAAAATGGTCTGCTGACTCCAACATTCAAGGCAAGCACTGTGTCC TTATGTTATCTGTTTATCACTTCAACTTCTTATTGTGTGGCATTAAAGTATGTTTTTGACATGTACATTTAAACTTCTCA GATTAAGAGGCCTCAAGCAAAGGAATATTTTGCAAAAGCAATATCTGATATGTACAGTGATCTCTCAAAAGCTGATCCTT CTCAGAAATCTTTGTGA 

CDS sequence (LotjaGi5g1v0315700.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACAGGTTCCCTGATCATCCTGAAATTGGTACACTGCATGAAAATTTTGTCCGTGCAGTTGACACTTTTCGAGACTA CAAATATCTGGGAACCCGTGTTCGTGTTGATGGAACAGTTGGAGAGTACAAATGGATGACATATGGAGAAGCAGGTGCTG CCCGGTCAGCAATAGGCTCTGGTTTGATTCATTATGGAGTCCCAAAGGGTTCCAGCATAGGGTTGTATTTTATTAACAGA CCTGAGTGGCTCATTGTTGATCATGCTTGCTGTGCGTATTCATACGTATCAGTTCCTTTATACGATACTCTTGGTCCTGA TGCTGTCAAGTATATTGCTAATCATGCTCTTGTGCAAGTTATATTTTGCGTGTCTCAAACATTAAATTCATTGCTGAGCT ACTTGTCTGACCTTCCAACTGTCCGTCTAATTGTGGTAGTTGGAGGTATGGATGATCAAATTCCATCGCTTCCATCATCA GCTGGTGTTCAGGTTATTACATATTCAAAGCTGCTTAGTCAGGGGAACAGCAATCTCCAACCCTTTTGCCCTTCAAAACC TAGTGATGTTGTAACGATTTGCTATACTAGTGGTACAACTGGAACCCCAAAGGGTGCTGTCTTGTCCAATGAAAACTTCA TTGCAAATGTTGCTGGATCCTCTTTAGATGAAAAATTCGGCCCTTCTGATATTTATATATCTTATCTCCCTTTGGCACAC ATATATGAGCGAGCAAACCAGGTCTTGAATGTATATTTTGGCATTGCAGTGGGATTCTACCAGGGGGATAATATGAAATT AATGGATGACCTAGCTGCTCTAAGACCTACTATCTTCTGTAGTGTTCCTCGCCTATATAATAGAATATATGCTGGAATTA TCAATGCTGTTAAAACTTCTGGTGGTCTGAGGGAGAGGATATTTAATGCTGCCTACAATGCTAAAAGACAGGCACTATTG CATGGCAAGAACCCATCTCCAATGTGGGACAGATTAGTTTTCAATAAGATAAAGGAAAAGCTTGGAGGACGAGTTCGTCT TATGGTGTCAGGAGCCTCTCCTCTATCACCTGATATCATGGAATTTTTAAAGATTTGCTTTGGTGGGCGTGTGACTGAAG GATACGGAATGACTGAGACCACTTGTGTTATAAGTTGTATTGATCAGGGTGACAAACTTGGTGGTCATGTTGGCTCTCCT AGCCCAGCCTGTGAGGTAAAACTTGTGGATGTTCCAGAAATGAACTATACATCTGATGATCAGCCCCAGCCCCGTGGTGA AATTTGTGTCAGGGGTCCCATTATTTTTAAAGGATATTACAAAGATGAAGCTCAGACGAGAGAAGTCATTGATGAAGAGG GATGGCTGCATACAGGAGATATTGGGACATGGTTACCTGGTGGTCGTCTCAAAATTATTGATAGGAAAAAGAATATCTTC AAGTTGGCACAAGGCGAGTACATTGCTCCGGAGAAGATTGAAAATGTGTATGTCAAATGCAAATTTGTGGCACAGTGCTT TGTATACGGTAAGGGAAAGAGTCATTCTTCAGTTTGCATGTGTGCCATCTTTTTGTGTCTCTCTTCCTCTATCCCTTTCT AG 

Protein sequence (LotjaGi5g1v0315700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNRFPDHPEIGTLHENFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGAARSAIGSGLIHYGVPKGSSIGLYFINR PEWLIVDHACCAYSYVSVPLYDTLGPDAVKYIANHALVQVIFCVSQTLNSLLSYLSDLPTVRLIVVVGGMDDQIPSLPSS AGVQVITYSKLLSQGNSNLQPFCPSKPSDVVTICYTSGTTGTPKGAVLSNENFIANVAGSSLDEKFGPSDIYISYLPLAH IYERANQVLNVYFGIAVGFYQGDNMKLMDDLAALRPTIFCSVPRLYNRIYAGIINAVKTSGGLRERIFNAAYNAKRQALL HGKNPSPMWDRLVFNKIKEKLGGRVRLMVSGASPLSPDIMEFLKICFGGRVTEGYGMTETTCVISCIDQGDKLGGHVGSP SPACEVKLVDVPEMNYTSDDQPQPRGEICVRGPIIFKGYYKDEAQTREVIDEEGWLHTGDIGTWLPGGRLKIIDRKKNIF KLAQGEYIAPEKIENVYVKCKFVAQCFVYGKGKSHSSVCMCAIFLCLSSSIPF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 2 521 520 0.0
PANTHER 2 521 520 0.0
SUPERFAMILY 7 522 516 5.49E-113
Gene3D 8 320 313 1.3E-46
Pfam 40 482 443 5.1E-104
CDD 41 511 471 0.0
ProSitePatterns 193 204 12 -
Gene3D 321 473 153 7.8E-41

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0315700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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