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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0317100 |
| Transcript ID | LotjaGi5g1v0317100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycoprotein membrane GPI-anchored protein; TAIR: AT3G06035.1 Glycoprotein membrane precursor GPI-anchored; Swiss-Prot: sp|Q84MC0|UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035; TrEMBL-Plants: tr|I3SZL5|I3SZL5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0317100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63495765..63500048) extracted from Lotus japonicus Gifu genome v1.2.
TTAGTGTATGTTTAGTTTGCCGGTCCTGGAAAACGCAAACGTGATTTCACGTATCTCAAAGGTACTAACAGAGAAACTAG AATTTATCACATTGAGTTTAATGTAAATCAAAAGTAGAATTTTACCACGTCGAGTTCAACATAGAGTTAAATTGAGTTCA ACAGAAATACAAAGATATACTTAGTGTCAGTGAGCTGTCTATAGCTTCTAGCTAGCTTCTGTTGGAAGAAACAATTAAGC GCCCACAGCAAGCAAACCCACCTTACAACCTCATATAAATCCAAAGGTAGCAAGTCTTTTTTGCTATAGAAGTAACCTTG CATTCTGGTTCTGGTAACAACTCCACTGCAAATAATGGTGTTGCCCAAGTTCTCTCTGCTCTTCTGGCTTCTCCTTTCTT TCAATGTCATTCTCTTGATAAATTACCCAACTGAATGTGCTGATGGTGAGTACTTGCTGATCTTATTGATTTGATCATTT GAGTTATGTGCTGAGATTTTATCTTGTGTTGAAATTAAAAGGGATATCTTGAGACTGCAATTAGCTTATTTAAACTTTTG CTGCAGATGAGAAAGATAACCTTTATCAGGGTATCAATAAGTATCGAGCATCAATAAACCTGAAAGCTCTAGCAAAGAAT GAAAATGCTGATTGTCTTGCTGATCAAATAGCTGAACAATTCAAGAATCAACCCTGCACAAACACCACAGGTGCTAACAC AGTCCCAGGGACAGAGCCTCAATTCTCCAACTACCCAAACCTTTTAGCTAAATGCCACTTGGCTATTTCCGACACACAGG ACAGAACTGTCATGCCTGCTTGTGTTCCTAACCTGGTTCCGAGCCTCGTCCTCTCGAATTTCACGGGATCTCTTTATTCA GATAGTCTCAACGACACAAAGTACACAGGAATTGGAATTGGTTCAGAAGATAACTGGATTGTTGTTGTCTTAACCACCAA TACACCTGCAGGAAACTTTGCTCCATATAGTTCTAATGGTGCCAATTTGATTTCCAAAATGGGATTGATTCATTGTTCAA TGCTAGTATTAGTTGGCATCGTTTTCCTGTTATGAAACTCATAGTGTGGCTATGGGCAATGCTTCATTGTTACAATTTTG TTCCAAATAAAGGTTTTATTTGTGTCAGTGTAAACTGAAAATAATGAAGACAATAGTTTTTTTCTGGAGGAATTTGAGAG ATCCTGGTTTAACAGTTGTTTGAGTATTGTAGTTGTCTATTGAATGCTTGAGTTAATAAAACAAATAGGAGAAAGAAAGC GTCATAATTGTCACAAATAATATCATTTTTTACTCTGGAACTGGAACTTTGTCCTTTGCCAAATGATAAATCACAAGTCC AATTGCAGGTGCATAACACAGTACTAACAGAAAACGTATTAGATGATGAGAAAGACTCCGTAGATCTGAATTTATTTCTT CACATTCATTCTTTAGAAAAGAAATCTTAAGCCCTACCCACTAGCAATACTCGCATTTCTTGCATCTACCATTATTTTCC TCCAGAGTAGACAAAGTTATTTTAGCAATATTCTTGGATGAGAAATTATTCAGAATATACTCATCACAAATTCAAGCTGC TTTCAACTTGGGGTGTTTGACAGATAGTAATCTTCCGATCATGAGCATCAGAATCCATGAGGACTTTGTGATCTTCTCCT TTACCATCATAAGTAATGCAGAGCTTAGAACTGTTTTCAATATCTGCGCCTGCAATCCATTGAAAAATCCCAAAAGACCT TCTCTTCTCCAAATAGTATAGAGTGCTCCAGAGATTGTCCTCTGTGCTTTCCTCTCAGCTTCTGTCCTCTTATCATCATC TGAATCAGCAGCCTGAATCATAACCTTGCACCTATTGTCAATTCAAAACTTCTATCAACACAAAAAAGTCCAGAACATAG CAAAAGCAAAGAAAAGACCAATGTATCAAAATGCTTTTTTTTTTGAGGATACATCCATACAAACCATAGATCTGTATAGA ACTTCCTTTTGCATGATATTCACTAGAATCAGTTATGCTAAGTAAAAATTCTAGGGGAATATAAATTAAATTGATCATCC ACCTGATGGCTGGGTAAGTCAGGCATGTAGCTGCACATTTTGAAACTGCACCCAACATGAAAGCAGAAAATGAAGAAAGT GCTTCTGGGGATGACTTTGTATCTGTTTTCTTGCTCATCTTGTCCTTTAGTATTCTCTGTTTCAGCTGATCAAAGGCAGT ATACTGTTGGAGGAGAAACAAAAAAATACCCTTTTTAAGTTTTGGTAGTCTTCTAGTGCAACGTAATCTGGAACAAAAGA TCCTCTCTAGGTTTGATATTTGTATAATATCCTAAGAGTGATACCTGAATTGATGGGTTTGATGTTAATAGAATAGATAT GGCAAGACCGTCAAATGCCTCGCTCCACGTACCCTCTGAAAGGGACTTCCAGAATCCCTTGGATTTTCCAAATTCACTTG TCTGCATCCTTGAGGCTGCAGTATCTAAGGGCTGTAAAATAGAAACAGATATTACTGAAGATTGTGCTCCTAACAAGGAA AGCATGAGTTTTGACAGTACAATTAACCAATTAGAGTGTAGTTTCTTTCTTTTACAGATCTATAGAACAATAAACTTGAG AGAACATACAGAATTAGTTGATCATGTTCCTGTTTTGGAAGGTGAGAAAGTTGTGTCATGACTTTAACCTATATACTCTA AGAATATCCCCACCCCACCACTACTCTTAGTTGATCACATACGTGAAATGCCAAATATTAAACCTTTATAATGCTGCCAT GGCCACAGGATGACTATTACCCTCAGAAGATCCTTTTTTCGTGCAAATTTATACAAGCTCCATCAGTTAGCAAACTGAAA AAGAACATCTCACGCAAGTATGTAACTAACAGTAATTTCTCTCTGAAAGAATAGGAAATAGAGACTTGCCTGTGTTATTA ATATTGTACAGACCCCAGCTGCAGTAGCAGCAATCAAGTTTGCTACCGTTCCAATGTTCTTGTTTCCACTTCTTATCAAA TATAGCCTCTTAAAGTAGCTGTATCCGTAGAAATAAATAAAGGACGAAACAAAGGACTGGACATTTTTTGTCCCAAGGCC TTGGCACAATGAAAGCACCTGACGTTTAGCAATTGCTTCCCATAAAACATCAGAAATTCCCCTACACAGGACAGAGCAGC AAAATCAAATAAGCACAACTTGCTATTAACTTCCTAGTTAACCTCGCCATGATGAAAGCAAAAGAAGACATTACAATTTG GCAATTGAAATGTTATCATTACCATTTGGCCTTCTCTAATGATCAAGTCTTCATTTTGTTGATAAGAGAAAACCAAGAAC CAACTACACACAACATATTGACCTGTTTGGTTTACTGTTAGAAAGTACGAAAACAGAAAATAACACATCGCGAGGTACTT CAACAAAAAGTGCATCAGATGTGTTATTTTTCCGTTTTCATACTTTTTAACTGTAAACCGAACGAAATTATACACAACTT CCTGCTTGTTGGCTTTAGTATTTCCCCAAACAAAAGGCTCCCTGATCCAAAAGCATACTTACACCCAAATTGTTTAATTT AAGGTCATGATCATAGATAACTCATATATCTAGCAAACTTATAGTAAATAATGTCACATGCTTACAGTAATATGGAATTG GCTAGTGAAAATTAAAAAAGCTAGTAAGTTAGAATATAATTCAATTGGAGCAAAAAAAAAGTAAAATGGGGAGAAAAATT GAACCTGTATTTTCGCTGATGCTTAGCTTGTACTTCAGCTTGATATTTGGTCTTGCAAGTATCAAGTGGGTACAAGACAG TGGTGCTAACAAGGGATCCAATGGCACCAGAAGTAGCTTCTGACAATGATTCCAGATCAAGCTGCATCTTCTGTTCTCAG CCCACAGACACAAATCAACGAAAAGGTGAATAGAGTGTAAAGATGCAAACTTTAGATTTATCGGACAAAAGGGTATGGGG ATTCGAAGGATATGAAACAAAAGCTGCTGTGTTTGATAGGTTCAAAGACAGCCATGGATTGAAGAAGGAGGGGAATTGAG GACAATCAGAAAATGGTGGCTATAAGGGCAATGAGGAGAGGGTCAAGAGCAGAGAAGTGAGTGAGGCCCAGGATGGTGAG GATTGGTTGAATTCATGAATGGAATGTTAATGTTGGTTGTTGAACTTCATTCAACCTTCATAGTTCAGTACTGTATCTTT TTGGGAATTGGAAGGTAAGGGGGTTTGTTGTTTTAAGATATTTT
CDS sequence (LotjaGi5g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGCCCAAGTTCTCTCTGCTCTTCTGGCTTCTCCTTTCTTTCAATGTCATTCTCTTGATAAATTACCCAACTGA ATGTGCTGATGATGAGAAAGATAACCTTTATCAGGGTATCAATAAGTATCGAGCATCAATAAACCTGAAAGCTCTAGCAA AGAATGAAAATGCTGATTGTCTTGCTGATCAAATAGCTGAACAATTCAAGAATCAACCCTGCACAAACACCACAGGTGCT AACACAGTCCCAGGGACAGAGCCTCAATTCTCCAACTACCCAAACCTTTTAGCTAAATGCCACTTGGCTATTTCCGACAC ACAGGACAGAACTGTCATGCCTGCTTGTGTTCCTAACCTGGTTCCGAGCCTCGTCCTCTCGAATTTCACGGGATCTCTTT ATTCAGATAGTCTCAACGACACAAAGTACACAGGAATTGGAATTGGTTCAGAAGATAACTGGATTGTTGTTGTCTTAACC ACCAATACACCTGCAGGAAACTTTGCTCCATATAGTTCTAATGGTGCCAATTTGATTTCCAAAATGGGATTGATTCATTG TTCAATGCTAGTATTAGTTGGCATCGTTTTCCTGTTATGA
Protein sequence (LotjaGi5g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLPKFSLLFWLLLSFNVILLINYPTECADDEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTTGA NTVPGTEPQFSNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSLNDTKYTGIGIGSEDNWIVVVLT TNTPAGNFAPYSSNGANLISKMGLIHCSMLVLVGIVFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 199 | 199 | 1.9E-95 | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 199 | 199 | 1.9E-95 | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 177 | 156 | - | – | |
| Phobius | 178 | 198 | 21 | - | – | |
| Phobius | 199 | 199 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0317100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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