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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0318000 |
| Transcript ID | LotjaGi5g1v0318000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT1G61770.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q2QUP1|DJC79_ORYSJ DnaJ protein ERDJ7; TrEMBL-Plants: tr|A0A151U714|A0A151U714_CAJCA DnaJ isogeny subfamily C member 25; Found in the gene: LotjaGi5g1v0318000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63557490..63561269) extracted from Lotus japonicus Gifu genome v1.2.
ATCCAATTCAAGTCGGGCTCTCGGAGCATCAAAGATCCGGAAATAGATTGGATTTGATTATATTGCGTTAAGACAGAGAG CAAATTTGGGTCAACGAAAAACCACCACGACCTCCGTCGCGCCATACACAGCGAAATGAATCCGCCGCCGGCAACAATCC GGTGGCACACAACCGTAACCCTATGCCTCGCGGCGGTTCTCATCCTAACCACCATATCTCCTTCGCACGCAATCTACTGC GACGAAGATGATTGCTACGATCTGCTCGGGTCAGCTACCATTCCGTTTCTTCTCCCTCCCCCAATTGCTTTTGCATCTGC TTGATCTGTTCACGTTACGTTATCTCCATCGTTGTTTTACCTGCAGGGTTTCTCAGAATGCTAATTCTTCAGAGATCAAG AAAGCTTACTACAAACTCTCGTTGAAACAGTATTTCGCTCTCTCTTCAACTTCTCCTTAACTCGATTTGTGTTAGATTAT TCTAATCTCAGCTTGGTTTTGCTTTTGAATGATTCATTTTCATTTTGATTTTCTGTTAATTTCAGCCACCCTGATAAGAA CCCTGATCCAGAATCAAAGAAGCTGTTTGTTAAAGTCGCTAATGCTTACGAGGTTTTTTACTTATTCTTCTAGTTACAGC TTGTTCTTCATCTTCTTTTTATTCGTAAAATCGATAATGCATGAATGAATTATTGATTCTGAAGTAGGAGTGTGTATTAT AGATGAAATTGAGAGTTTCGCAATGCGAAATGAATTGAAAAGTAACCACATTGTTCTGTTTTGGTGAGAAATTACTTGTC CTGTGAAGTGTGAATGACGAAATATAGAACTTGTTTTCAGATTTTGAAAGATGAGGCCACGCGAGAACAATACGATTACG CAATTGCGCATCCAGAGGAGGTATCTAGATTTTCTTATGGATAAGTTTGGTGTCCTTTTAAAATTGTTCACCCTTGTCCT TTTGATGTTAATTGAGATTTCATCTCTTGATTCCAGGTGTTTTATAACACAGCACGTTACTATCGGGCATACTATGGGCA TAAGACGGTGAGATTTGTTTCATTTCAAATGGGGATAATAATTTTTTGCTGTAATTGATTTAAAATGCAGAGATTTTTAC ACTTAATCTGATACTATTCGTGATTGTGTACTTTTATCTTTCAGGATCCTCGTGCTGTGTTGATTGGCCTGCTTCTTATT CTTTCTGGTTTCCAGTATCTAAATCAGTCGGCAACATATAATCAGGTACCGTGGTATATTAAGCATCATTTGATTTACTA TACCACACTGAAGTGGAACTGTGCGATAGATATGTTAGCTGCTAATGCTGCTATATTGCCAAAATTACGTTACAGCTTTG TATTTATGTGTAATATGCATTTATTGTACTTTGCTTGAAACAAGCTAAGGGTGTTAAACATTGAATTCAGCTTGCTATAA GCCCATCAGTTCAGCGCACCATGTTTTAAGGTGTTTTGGATTTGTACAAACCTTTTCATCTGGATTCATGGATGTAGAAC TAAATTGTCTGTTTGTGGAACATATCTTGGCAAGGAAGCTAAGTCTAGCAGTTGAGGGTTCCCTGCCACAACCCAAGTTT TATTGTTTGCATTTTTAACATTTTACTTGTTCCACGATTCCAGATACCCTTTGTAGCTAAAATGTTATATTGAAACCTCT GTAATCTTTGATGCATGCCAAAGGTTTGAAATAGATCATTGTTGTGCAATGCATTGACTGTTGAATATATGTACAACTGT TAATTTTCCGCAAATTACTTTATTTGTTATATCTGAATATTCTTTCTAAAGATTATAACATCCAAATTAATTGCAGTGCT TTTCTTTTTTTAGGCCATAGAAATGGTCAAGAAGACACCTGCATATAAAAATAGACTAAGGGCATTGGAACTTGAACGCA ATGGAGGGATCACAAACAAGAAGAAGAGTCAGAAGAATATGAACAAGTATGGTATCATTGTTAGTCTGTATAATTCTTGT ATGTGATTTCCTATATCTTGACCTGTTTAATTTGATAGTCCTCCTTGCAAACTCTTATTCCTTCTGTTAAATCAGTTGAT ACATTGTCTATGATTTCATTTCGTTTGACATACAATGATCCAATGTGAGGAATCTTTATATGCAGGAAAACGGAGGAAGA CCTCAGCAAAGAACTTGACCTGCAGATAACAGGAGCTGAAAAGCCCTCTGTATGGAAACTCATTGGTGTTCGCTTTATTC TTTTACCTTATACTTTAGGAAAGGTTAGAGCTCATATCTTTTACTTGGAAACTGCAATCACATGCTATTGATATCTTATT ACTCTATTCAAATTCAAAAGTGTACAAATATGAAATTCTTTTGCACAAGTAGTGCTGAGCCTCGACAATGAATATTGTTT TATGTGCTACTACTGACTAGTTCTATCCTCCATCCAGCTACTGTTCTGGTCTGGCTGTTGGTTTTGGAGATACAAGATGA AAAAATGTCCTTATGCATGGGAAGATGCTTCTTATCTAACACAAAGGTCCCTTGGTCTTCCTAACGATAGATGGAGAAGT ATAGGTGACTACTATTTTTCCATCATGAACTTTCTTACTTTATGCATGATGGAAGTAGAGGAATCTATTGTGTTGCAAAA GTAGAGTCGTCCTGCTTTTTATATGCTTTTTGTTACTTGTTCTGGATTTTTCATGCATAGCTTAACATACTGGCAGAGAT GGTGCCTTTTCATCTGTTAATGGTTCTGAACCTATTGAATTTTACTGATGTGGTGCCTGTTATTGATAGATGAAGAGACA AAGGAAGATCTTGTGCTAAGACGCTTGTGGGAGAAATCAAATCTGGAAAGTTACATGGCAGAGATGCGGAAAGAATCAAA ACGCAGAAGATAGCTGCTTTAGTTGATTCACGCCTTCACCTGCTACTTTTAAAGTACTAAAATATATTTTACTTCTGAAC TTGAAATTAACTGCAACATGATAGTTAAAATTTTCAGCTATAAATATATTTATTAGGGATGCTTTTATATTTGGGGGAGA GGGGAGAGGGGGTAGAGCTGAAATTTTCAGGTAAACCACAAAGTTTTGTATTTATAAGCAAAATGTACTAAGTTATAAGC AGGCTGCTCTCTGGGAGTCTGTCAACAGAACACCAAAGATGACTGGTTTTGCTATTGTTTAATTCTTTCAATGAAGTACG TACTTAGTAATAAGCTTCGGTCTTGCGGCAATTGCATGTTTGGTAGTGGTTCTGTGCACCTGTAATTCGATAATGTTAGG TAGATTTTATAAAAACGGTTTATTATCAGAGTTTTGACTTGCATGTAAAGATATCTGAAATGCCTCCTCCTTTTGCTCTT TTTGTGCCATGGTTCGTACTGCTTGGGCTTAAGGAAGGTGCATGGAACAAGTGGGTGATTAGGATCATTGACACTAAGAT TATACCTGAAGTTAGGAGGGAATGGAAGAGGGTAGTTGTTAACTAGCAAGTTTTCTTTCTGCTATTTTTGTGTGTGCTCC TTATCCATTTTGATATTAACTCCCTATCATCTGTGTTCAATGAAAACATCTTCAACTTCTTCCTTTTCTCATCACATACA TCACTATAAATATAGAGGTGACATACTCTTAATCTCCTCACAATTCCGTTCTCATTCATGCGTGGTGTGGGGCTAGAAGT GGTGGTGCCCTCCAAATCGTCTTCAGCTTCCCCTTCCATACTTTCATGGTGTGGATGCACCCCAACTGATATAAATACTC CCTTTGTCCTACGATAAGTC
CDS sequence (LotjaGi5g1v0318000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCGCCGCCGGCAACAATCCGGTGGCACACAACCGTAACCCTATGCCTCGCGGCGGTTCTCATCCTAACCACCAT ATCTCCTTCGCACGCAATCTACTGCGACGAAGATGATTGCTACGATCTGCTCGGGGTTTCTCAGAATGCTAATTCTTCAG AGATCAAGAAAGCTTACTACAAACTCTCGTTGAAACACCACCCTGATAAGAACCCTGATCCAGAATCAAAGAAGCTGTTT GTTAAAGTCGCTAATGCTTACGAGATTTTGAAAGATGAGGCCACGCGAGAACAATACGATTACGCAATTGCGCATCCAGA GGAGGTGTTTTATAACACAGCACGTTACTATCGGGCATACTATGGGCATAAGACGGATCCTCGTGCTGTGTTGATTGGCC TGCTTCTTATTCTTTCTGGTTTCCAGTATCTAAATCAGTCGGCAACATATAATCAGGCCATAGAAATGGTCAAGAAGACA CCTGCATATAAAAATAGACTAAGGGCATTGGAACTTGAACGCAATGGAGGGATCACAAACAAGAAGAAGAGTCAGAAGAA TATGAACAAGAAAACGGAGGAAGACCTCAGCAAAGAACTTGACCTGCAGATAACAGGAGCTGAAAAGCCCTCTGTATGGA AACTCATTGGTGTTCGCTTTATTCTTTTACCTTATACTTTAGGAAAGCTACTGTTCTGGTCTGGCTGTTGGTTTTGGAGA TACAAGATGAAAAAATGTCCTTATGCATGGGAAGATGCTTCTTATCTAACACAAAGGTCCCTTGGTCTTCCTAACGATAG ATGGAGAAGTATAGATGAAGAGACAAAGGAAGATCTTGTGCTAAGACGCTTGTGGGAGAAATCAAATCTGGAAAGTTACA TGGCAGAGATGCGGAAAGAATCAAAACGCAGAAGATAG
Protein sequence (LotjaGi5g1v0318000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPPPATIRWHTTVTLCLAAVLILTTISPSHAIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKHHPDKNPDPESKKLF VKVANAYEILKDEATREQYDYAIAHPEEVFYNTARYYRAYYGHKTDPRAVLIGLLLILSGFQYLNQSATYNQAIEMVKKT PAYKNRLRALELERNGGITNKKKSQKNMNKKTEEDLSKELDLQITGAEKPSVWKLIGVRFILLPYTLGKLLFWSGCWFWR YKMKKCPYAWEDASYLTQRSLGLPNDRWRSIDEETKEDLVLRRLWEKSNLESYMAEMRKESKRRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 32 | 32 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 4 | 304 | 301 | 2.3E-132 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Gene3D | 25 | 126 | 102 | 2.2E-27 | ||
| Phobius | 33 | 305 | 273 | - | – | |
| SUPERFAMILY | 34 | 110 | 77 | 2.75E-25 | ||
| SMART | 38 | 95 | 58 | 1.2E-25 | ||
| CDD | 39 | 92 | 54 | 1.31028E-21 | ||
| ProSiteProfiles | 39 | 103 | 65 | 19.353 | ||
| Pfam | 39 | 100 | 62 | 1.4E-23 | ||
| PRINTS | 41 | 59 | 19 | 3.0E-16 | ||
| PRINTS | 59 | 74 | 16 | 3.0E-16 | ||
| PRINTS | 75 | 95 | 21 | 3.0E-16 | ||
| ProSitePatterns | 80 | 99 | 20 | - | ||
| TMHMM | 127 | 144 | 18 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0318000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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