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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0318400 |
| Transcript ID | LotjaGi5g1v0318400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT4G05220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN0|NHL1_ARATH NDR1/HIN1-like protein 1; TrEMBL-Plants: tr|I1NG91|I1NG91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0318400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63591852..63593030) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCTTCGTCCATGTACTATACTCAAAGCGCAGTTCCTTCCTTTACCTCCTCTCTGCAACTTCCTCCCTATACAAAAC CACAACCACAAGTCCACAATCATACCTCATTCATCAAAATCATCATCATTCAATTCATCTCCCACATCGCACAAACCGAA AAATGTACGGCAACAACGACCACATACCGGTTCACCACGTTGTGGGCCCAAACCAGAACCCAAAGCCCATGAAGCGCCAC CACACGGCCCGTTACTACATGCAGCGCGTCCAGGACAGCCTCACCACCCAAGTCTCCAAAGTCGTCTGCTCTATCTTCTT GGCCCTCCTCGCCATCGTGGGCCTGGTTGCCTTCATCACGTGGCTCAGCCTCCGCCCCCACAGGCCCAGGTTCTTTATCC AAGAGTTTAACATGCCGAGCCTGGCCCAAAACAACGGGTTCCAAAATGCCCAGATCACATTCAACGTAACAGCCCGAAAC TCCAACCAAAACATTCGGGTCTCCTATGAGTCCATGGATGGGGCGGTTTTTTACCGGGAGCAGAAAATCGGGTACACACC GTTACTTTCTCCGTTTATTCAGCAGCCCAAGACTACCAAGGTGCTTGACGGCGTTCTCAGTGGTGCAACATTGACCGTCA CGAATCAGCGTTGGTTGGAGTTCCAGAGCGATAGATCTGACGGTAACGTGGAATTTCGCTTGGAGTTAACGTCTGTGATT AGATTCAAGATTGCCACGTGGGAGACAAAGCGTCACACGATGCACGCCAACTGTAATGTTGGTGTGGGACCCGATGGTTC ACTCTTATCCAATTACAAGAACAAGAGGTGCCCCGTTTACTTCTCTTGAGGATTATGAAGCTTTTGGTCTTTGCTTGGAC ATGGATTTGTTATTTCATCAATTTGTTTTCTAATTGATTTTTGTATGATTATATACAGAAAGAAAAACGAAACAACAAAA CTACTATATAACGATAATTCAAGGATGTATTTTTTTTGTAATTATCTCCATTTACGGTTTTTTAAATGATGTGTTTTTTA TTTATATTTGTAAACACTATCTTCCTAGATAATGATTTTTGTACATATTGAAGTTGTAATATCCATCTGACATAGGCAGT TAAGAAGTTGCACACTATTAAGGGCTATATACAATAACTCCATTTGTATTGGTATTTAT
CDS sequence (LotjaGi5g1v0318400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACGGCAACAACGACCACATACCGGTTCACCACGTTGTGGGCCCAAACCAGAACCCAAAGCCCATGAAGCGCCACCA CACGGCCCGTTACTACATGCAGCGCGTCCAGGACAGCCTCACCACCCAAGTCTCCAAAGTCGTCTGCTCTATCTTCTTGG CCCTCCTCGCCATCGTGGGCCTGGTTGCCTTCATCACGTGGCTCAGCCTCCGCCCCCACAGGCCCAGGTTCTTTATCCAA GAGTTTAACATGCCGAGCCTGGCCCAAAACAACGGGTTCCAAAATGCCCAGATCACATTCAACGTAACAGCCCGAAACTC CAACCAAAACATTCGGGTCTCCTATGAGTCCATGGATGGGGCGGTTTTTTACCGGGAGCAGAAAATCGGGTACACACCGT TACTTTCTCCGTTTATTCAGCAGCCCAAGACTACCAAGGTGCTTGACGGCGTTCTCAGTGGTGCAACATTGACCGTCACG AATCAGCGTTGGTTGGAGTTCCAGAGCGATAGATCTGACGGTAACGTGGAATTTCGCTTGGAGTTAACGTCTGTGATTAG ATTCAAGATTGCCACGTGGGAGACAAAGCGTCACACGATGCACGCCAACTGTAATGTTGGTGTGGGACCCGATGGTTCAC TCTTATCCAATTACAAGAACAAGAGGTGCCCCGTTTACTTCTCTTGA
Protein sequence (LotjaGi5g1v0318400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYGNNDHIPVHHVVGPNQNPKPMKRHHTARYYMQRVQDSLTTQVSKVVCSIFLALLAIVGLVAFITWLSLRPHRPRFFIQ EFNMPSLAQNNGFQNAQITFNVTARNSNQNIRVSYESMDGAVFYREQKIGYTPLLSPFIQQPKTTKVLDGVLSGATLTVT NQRWLEFQSDRSDGNVEFRLELTSVIRFKIATWETKRHTMHANCNVGVGPDGSLLSNYKNKRCPVYFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 50 | 50 | - | – | |
| PANTHER | 19 | 226 | 208 | 7.1E-95 | – | |
| PANTHER | 19 | 226 | 208 | 7.1E-95 | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 51 | 70 | 20 | - | – | |
| Phobius | 71 | 228 | 158 | - | – | |
| Pfam | 101 | 204 | 104 | 1.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0318400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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