Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0320300 |
Transcript ID | LotjaGi5g1v0320300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT1G61667.1 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q8EU99|KITH_MYCPE Thymidine kinase; TrEMBL-Plants: tr|A0A072UN91|A0A072UN91_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0320300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63781664..63783397) extracted from Lotus japonicus Gifu genome v1.2.
CACAGCCATACGCATTTTCCTAAGCAATCATGTCTTTGATACCAAAGTTTTCTGTTCCCACATTCTTCCTTCTTCTTGCT CTTGTTTTTCTTCTGATCATGGAGACAGCTGGAGATTCTTCTTCTCTAGCGAAGGTCCTCCACCACCATGGCTTACCAGG AGGGTTGTTCCCTCAGAATGTGAAGTCATTCAATTTGGACCAAACGGGTCGCATGGAGGTGCACATGCATTATCCCTGTT TGGCTCATCAGTATGAAAGCCAAGTTTTCTTTGACTCTGTGGTGAGGGCCAACCTTAGTTTTGGGCAGCTCCAGGTGTTT GGAGGCATGTGTAGGGAAGAGCTTTTCTTGTGGTTTCCTGTGAAGGATATCATGGTCACTGATCCATCTTCCGGGCTTAT TATTATTGATATTGGTCTTGCGTTTAAACGCCTCCCTCTATCTCGGTTTGAAGATCCCCCAATTTGCATATCGCAGGGTA ATTAACTTCTCTTTCACACACACTCTCTAGTTGAATGCCCACTCATTCATGAATCATAATTTGTCCTGAATACTTTGGAA ATTAACCTTTAATTAAAGCTTTGAATTGTTGTTGCTATTGCGGTAGCATAATCTTGATGTTGTGAAAGATTACAAATAAA TTTGGTTGCTATTACGGTTATTGTGAGTTAACGTTGCAGCCATAATCACGGTTGTGTGCTGCAACTTAGTTTGTGTTTGG ATCAGTGAGTAGAAAATAAATTGATTTGTGTTTGGATATGCATTTATGAAAATGTGGTTTTTATTGAGTAATATTGTGAA ATTCATTTGTAAGATCTTAGAACTAATTATATTACCACATAAGCTATTCTACCAGAATCAGACATCAATCATACTTTCAA ACAGAATTGATTTTATCTATCTATATTTTTTACGGGGTTTAGCTACGGAAAACCAACATCTCTCAAAATCATGTTTTAGT TAAGTTAGCTTTTGATTACACCTTACTTTACTATATCATATTTCTACTCAATTTCTCGTTTTGAATGTAGAGTTGCAAAG AGAAAAGAATAAACTTGGTGCAGCAAGTTTCATCTCAACCTTAGAGTGTGTGATTTCCCATTACGAAATGACATAATGAA AATAAAATCAATTTTAGATAAAAATGTTGATCTTTGGAATTTTATTCTGAAGAATTAATTTCAAATCCAAAATTAATTTT GATATAATCTAGATAGAATTGTTTCTCATCTGTCAAAATTAATTGTGAGATTTAATTTGCAACTGAATTCCAAAATATTA CTAAATTCAAATCATTTTTTCATTAATGTATCCAAACATGAATCATTTCACTTTCAACTCACTTTTATTATGATCAGTTT TACCAAAATTTATTGTGAGAAACGTTGATTCAAGCACACTCAGATTTCTCTCATGGTGCCAAAATATATAGATACTATTG TGCTGCTGATTTAATCAATTTTCACTATCTTTCTTAATGGATTTTGTATCTATGGGTGGAGAAGATTTTGATTTCGAAAT TAAATGTGGTGTGCAGGTCTTTCGCTTCCGATGAGTGGAAGGAATGATGTTGGATTTGAAGATGAGTGATGAAAACTTGT TAGTTTGTCTCAAAGGATGGCTTCTTCTTTTCTCTTAGCAACTTTTGGTTATGTAGAAAGCACTATGCGTAGAAATGTGC AACTCAAAAATTATATTGCCATCCTGTAATAGCATGAGTCACAAGACAATAGTG
CDS sequence (LotjaGi5g1v0320300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTGATACCAAAGTTTTCTGTTCCCACATTCTTCCTTCTTCTTGCTCTTGTTTTTCTTCTGATCATGGAGACAGC TGGAGATTCTTCTTCTCTAGCGAAGGTCCTCCACCACCATGGCTTACCAGGAGGGTTGTTCCCTCAGAATGTGAAGTCAT TCAATTTGGACCAAACGGGTCGCATGGAGGTGCACATGCATTATCCCTGTTTGGCTCATCAGTATGAAAGCCAAGTTTTC TTTGACTCTGTGGTGAGGGCCAACCTTAGTTTTGGGCAGCTCCAGGTGTTTGGAGGCATGTGTAGGGAAGAGCTTTTCTT GTGGTTTCCTGTGAAGGATATCATGGTCACTGATCCATCTTCCGGGCTTATTATTATTGATATTGGTCTTGCGTTTAAAC GCCTCCCTCTATCTCGGTTTGAAGATCCCCCAATTTGCATATCGCAGGGTCTTTCGCTTCCGATGAGTGGAAGGAATGAT GTTGGATTTGAAGATGAGTGA
Protein sequence (LotjaGi5g1v0320300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLIPKFSVPTFFLLLALVFLLIMETAGDSSSLAKVLHHHGLPGGLFPQNVKSFNLDQTGRMEVHMHYPCLAHQYESQVF FDSVVRANLSFGQLQVFGGMCREELFLWFPVKDIMVTDPSSGLIIIDIGLAFKRLPLSRFEDPPICISQGLSLPMSGRND VGFEDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 28 | 28 | - | – | |
Phobius | 1 | 10 | 10 | - | – | |
Phobius | 1 | 34 | 34 | - | – | |
PANTHER | 2 | 151 | 150 | 1.1E-67 | ||
PANTHER | 2 | 151 | 150 | 1.1E-67 | – | |
TMHMM | 7 | 24 | 18 | - | – | |
Phobius | 11 | 22 | 12 | - | – | |
SUPERFAMILY | 13 | 148 | 136 | 3.01E-27 | ||
Gene3D | 21 | 139 | 119 | 5.5E-17 | ||
Phobius | 23 | 34 | 12 | - | – | |
Phobius | 35 | 166 | 132 | - | – | |
Pfam | 35 | 141 | 107 | 4.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0320300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…