Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0322000 |
Transcript ID | LotjaGi5g1v0322000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Endo-1,4-beta-xylanase; TAIR: AT2G14690.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|G7IEW9|G7IEW9_MEDTR Glycosyl hydrolase family 10 protein; Found in the gene: LotjaGi5g1v0322000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64072686..64075459) extracted from Lotus japonicus Gifu genome v1.2.
GCGGAATGAACAACAATATCCTCACAAACAGTGCATACCGGAAATGGTTTATGTCAAGATTCAAACACACAACCTTCACC AACCAGATGAAGTGGTACAGTACAGAGAAAGTTCAAGGCCAGGAAAACTACACTATCCCAGATGCCATGCTGGCATTGGC CAATGACAATGGCATTTCTGTTAGAGGCCATACCATTTTATGGGACGACCGAAACTTTCAGCCTGAATGGGTCAAATCCT TATCTCCTCAGGATTTGAGAGAAGCAGCAAGAAAGAGAATCAATTCTGTGGTTTCAAGATATAAGGGAGACCTGATAGCA TGGGATGTTGTGAATGAGAATCTCCACTACAACTTTTATGAGCAGAACTTTGGTGAAAATGCTTCTGCAATGTATTACTC AACAGCTTACCATCTTGATCCAAATGCAAGAATGTTCCTGAATGAGTTTAACACCATTGAATATAGTGGGGATGTGGTTG CCAACCCAGCAAACTATATCAGGAAAATTCGAGAGATTCAGCAGTTTCCAGGAACTAAAGGAATACCATTAGGAATTGGG TTGCAATGCCATTTTGCTTCTGGCAATCCAAATCTTGCTTACATGAGATCAGGGCTTGATATTCTTGGTGCAACTGGATA TCCAATATGGCTCACAGAAACTAGTATAGATCCACAACCAAATCAGGTATTTCCTCAACTTTACAGAGCAATCTGATTTA CTTCTTCAGGGAAATTGTTATTTACAACCAAAACTTCTGTTGTTCTGCTTGTTGCAAAATATTGGTTGCGGATGGAAAAA CTTATTTGTGAATTATTATAGTATTAACGCTTATGCAAGTGTTTAGATAAGCTTATGAAAATAGCTTACCAGCTACCTGT AAGTTGTTTTGAGCTTATTTTCATAAGCTGCTTAAATTAACTTATGAATAAACGCTTAACTAATCAATTTAGCCAAACGT GCATAAATAAAGTTCAAAGTATAGTGCTGCATGATTTAATACAGAAGAGGACACCAAATTTATCTGTTTTCATTTCTTAG AAAGAAAAATGTAATATAATGAAATCTGAATATACAAAGTGAGAGCTAAGACATTTTTTATAACTCAGTTTAACATTTCT TGTCTGTTGGGCAGGAAGAGTATTTTGAATGGATTCTAAGAGAGGGTTACTCACATCCTGCTGTTCAAGGGATTATAATG TTCATGGGTCCAGTGCAAGCTGGTTTCCAGAAGGCTCCTCTAGCAGATGAAAATTTCACAAATACTCCAATGGGAGATGT TGTGGACAAGCTAATTCGTGAGTGGGGAACTGGGCCTCATGAAACCATGGCAGATAGCAGAGGAATTGTAGACATTTCAC TACATCATGGAGATTATGATGTAATTGTTTCACATCCTCAAACACACTTCTCCAAAACACTCAATCTAAGTGTAAGGAAA GAGTTTTCACAGCAAACAATCCATGTGAAAATGCATGCCTGAAAAGGCATCACCTACTGTTAAAGCAAACTGTAATTACA AATGTAAAATTAAAATATTATAATAAAATGGCTTGAAGCATCATCATTATTTGGTAAATTACAGTTTCCTTGGGTGGTTT AAAAATTATGTTGCTTTCTCACAAAATGGCTGCCTACATTAAATCCACAAAGTAGATCCGGCTCCTCCATGGACCTCGGA CATAGCGGGAGTTTTATAGCACCGAATTCACCCTTTTTTTCTCAGAAAATATGAAATTCACTTCAGCATAAATAAAGCTC AAAACAGTTGTGAGCATTACTCAACAAATTGTACAAGGAGATATATAATTGTATAAGGTAAAAAAAAAACTGTTATTAAT GAACATGATTTTTTATGTGATCTTCAAACAAAATGTACTCTTTTTGCCAGAAATCTGCTACCCTTAAGTGATCTAATATA TTTAAACATAAGTACAAAACATAAATTTTTCCTATAGTATACTCATGTTGCATCAACTGAGAAGTCTTTTTGTGGGCCAA AAAAACGGGAAAATTCAACAAGTTCCTAACAGCTAAGTAAGTGAAAAATGTGATCTTGATTACAAACCTACCTAATAAAC AGTTAACAAGACAAACGGCAAAAATGTAAAAAGAGGTTAGATCTAATTCCTCCTTGCAGTTGAGATCTTCACATAAATGA CATCAAAGTCACTTGTTGTGGATTGGACTTGGTTTACTTGGAGGAGCCTTCTTTAAACTTGTGCCTAATGATTTCTGTAA GGCTTCATAAGATATTTTCAAGGAGACATGAGCTAGCAGCTTCCGGGGCGAGAACCTATCTATCCGATTACTTCTAGTCT CACTATTGATTGAAACTCCAGAGAACATGATGCAATATGTGAGAATTAAGAAAAAGAGGCCTACCAAAGCACATTGTGTG GTTTTCATGGCAGTGACAAGTAGAAACAAACAACAACTGAAGCTAGAAAAGAGAAGGGAATTCTGGTGCTTGGAACTATC CCATAAGAAAATGGTAAGGCTTGTTTGTGCTCAAAGTGTAACAATTCTTTTTACTAGACTATTGATGGTTGAAGCTTTCT ATGGAAAATGGAGAACTAAGAGAATTGGATATTGGACTTGAGTGGCCAAATCACTAGGATAATTCTATAAATAGAGTTAC CTGCTCTCTTTTAAAAGGATGAAATGAATGTATTTAACAAAAAAAAATATCTTAAAAGTTGTGTGAAAGATTCAGATTTA GGGATGAAGAGAGGGAAGGAAGATATAAGGATTATTTGACCTGCCACATTTTTG
CDS sequence (LotjaGi5g1v0322000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAACAATATCCTCACAAACAGTGCATACCGGAAATGGTTTATGTCAAGATTCAAACACACAACCTTCACCAACCA GATGAAGTGGTACAGTACAGAGAAAGTTCAAGGCCAGGAAAACTACACTATCCCAGATGCCATGCTGGCATTGGCCAATG ACAATGGCATTTCTGTTAGAGGCCATACCATTTTATGGGACGACCGAAACTTTCAGCCTGAATGGGTCAAATCCTTATCT CCTCAGGATTTGAGAGAAGCAGCAAGAAAGAGAATCAATTCTGTGGTTTCAAGATATAAGGGAGACCTGATAGCATGGGA TGTTGTGAATGAGAATCTCCACTACAACTTTTATGAGCAGAACTTTGGTGAAAATGCTTCTGCAATGTATTACTCAACAG CTTACCATCTTGATCCAAATGCAAGAATGTTCCTGAATGAGTTTAACACCATTGAATATAGTGGGGATGTGGTTGCCAAC CCAGCAAACTATATCAGGAAAATTCGAGAGATTCAGCAGTTTCCAGGAACTAAAGGAATACCATTAGGAATTGGGTTGCA ATGCCATTTTGCTTCTGGCAATCCAAATCTTGCTTACATGAGATCAGGGCTTGATATTCTTGGTGCAACTGGATATCCAA TATGGCTCACAGAAACTAGTATAGATCCACAACCAAATCAGGTATTTCCTCAACTTTACAGAGCAATCTGA
Protein sequence (LotjaGi5g1v0322000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNNILTNSAYRKWFMSRFKHTTFTNQMKWYSTEKVQGQENYTIPDAMLALANDNGISVRGHTILWDDRNFQPEWVKSLS PQDLREAARKRINSVVSRYKGDLIAWDVVNENLHYNFYEQNFGENASAMYYSTAYHLDPNARMFLNEFNTIEYSGDVVAN PANYIRKIREIQQFPGTKGIPLGIGLQCHFASGNPNLAYMRSGLDILGATGYPIWLTETSIDPQPNQVFPQLYRAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 228 | 228 | 3.1E-125 | – | |
PANTHER | 1 | 228 | 228 | 3.1E-125 | – | |
Gene3D | 1 | 236 | 236 | 4.7E-60 | – | |
ProSiteProfiles | 1 | 236 | 236 | 31.145 | ||
SUPERFAMILY | 2 | 225 | 224 | 5.18E-66 | ||
Pfam | 3 | 224 | 222 | 5.0E-37 | ||
SMART | 28 | 236 | 209 | 5.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0322000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…