Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0322600 |
| Transcript ID | LotjaGi5g1v0322600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G14760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84; TrEMBL-Plants: tr|C0JP15|C0JP15_LOTJA Putative basic helix-loop-helix protein BHLH10; Found in the gene: LotjaGi5g1v0322600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64101876..64110563) extracted from Lotus japonicus Gifu genome v1.2.
AAATAGAGTAAGGGTATTGATCTCATTCAAGCACTGAAACAAAGTGGAGTTTCTTCTCACATTGAAAAAGAAAACCATCC ATACAAAAGAAAGAAAAATGGAGCAAACTTCTGAAGAATGGAGTTCTCTCAGTGGATTCTACACAGCTGAAGAAGCTGAT TTCATGAGCCAGTTGCTTAGTAACTGCTCAGTCCCTGATCACCAATATGAAAATTACAATTTGGAGATTCCACCTGCATC ATGGTCTGGCCATGAATCAACAATAATGAGTGTGACAGGCATCAATTGCAGTTCATATGTTCACGCAAATGCCAATAATA GTGAGACTAATTTTTTTGGTTTTTCACAAGGAAGTAGCTCCAATATTACTAATTGTAGCAACATGTTTCCTACTACAAGT GGTGGCAATTGCTGCTTTGATGATCCGGTAGCCAACATTGGCTTCATGTCAATAGGTGATGCCAAATTCAACACATTTAG TGTTCAAGGGAATGAAAACTCTGATGAAGAGGTTATTGGTGACAAGGCTCACAAGCAATGTGAAGAACCAGTTTCTGAAC CACCAGAAGAGGATATAACCAGCAATCTTGAAAAGTCAGGAAAAAGATCCAGGAGCGCAATGGAGGTAGAAAAACACATC ATTTTTATTTTTTGGTTCTACATAAATCACATAATGTTACTTCCCAGTCCTAGTGATTTGCAAACACCCAAATTTTCTCA ATATCTCTCTCGACATTCATGACCTCTTATTTTCTCACTCTCTGTGTCTGTTGGGTGTTTGCATTGTACGGATGCTTATG AATAATTGTCTTTATAATGTTTTTCCTGAAGAATGAATTTATGTGTTTGATTTTAAGTGGTTCTCATCTTGATGTGATAA TTTCGATTTGATGATTTTATAGGTTCAAAAGAACAAGACAAATGTCAAATCTAGGAAGAAAGCAAAATCTGCTTTTACAA GCAACACTGAAGAGGATAGAAATCTTGGTCTTCATGGGCAGAGTTTGAGCAGTTGCTGCTCAGAAGATGATGACTCCAAT GAGCTAAATGGTGGAGGGTCTTCAAGCTTGGACCAGAAGGATTCTACAACTATTAAGTTGAAGGGTAAATCAAGATCTGA AAGAGGTTCTGCTACTGACCCACAGAGCATCTATGCAAGAGTATGTATTGTGCCAACTGCCAAGTGTATTTCATCAAAAT ATCATGGCTATAATTTTATGATCTTATAATATTTTCCATGTGCTGTGAACTGTGAATTAGATCTCATGAAATTTTCCATT TTTGTAATGCAGAGAAGAAGAGAAAAAATAAATGAAAGGTTGAAAATCTTACAAAACCTAGTCCCCAATGGAACTAAGGT ACCTTTCTTAATGCAAATCCAACTGTTGTGAAAAATCAAAACAATTGGTTAAGATGGTAAAATTATCAAGCTTGCTTCCT TTTGTACTGTAGGTGGATATCAGCACCATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTACAACTCCAAATAAAGGT AACAAGTTAATTTTAAGATCAGTGAAAAATAATTTTCATATTAGACTTTTTGAAATATTGAGACTCATTCATGTTTTCTC ATATTTTGATTTCAATTGAACAGCTTCTGAGCTCTGATGATCTCTGGATGTATGCTCCCATTGCTTTCAACGGAATGAAC ATTGGACTAGACCTCAATCTTTTTCCAACCAAACAACCATAACTATATAGCACTCAGGAAAAGAGGATGGGGCAAAAGAG CTGATTTTGGCATTTTGTTATGTTTTTTGTTTTGTTCATAAGTATTTATTAACAGCATTTATTTCTAAGAAAGCATGAGG TCAATTAAACAAGCGACCTTGTGTATTTTTGTTAACTATGAGCCATCATTTTGAGTTGGTTTCTTGACTCTTTATTAATG ATTTCTTGATTATTCATGTTTGGCTCACCCTTTTTAGTAATCTCGAGTTATTGTCATCTTTCCCTAAAAATTCCAAAATT AGGCTGTATTTCCAAGCTTGTGTCACTTTCAAATTTGGACAAAGTTGACCCTGAATCATAAATTAATCAAAGATTAACAA TATACTTAAGTTCTTAAATGATAGCAACACACTTTAATTAACAAACACTTAAACACACTATTTATTGTTGATTTTTTACA TTGGAAAGATAAACTACAACCCTCCAGGGTTGACACCTGGACCTCCCATCCCCAACGCATATGTCTACTAACTCAAGAAA ATAACAAAAAAAGTACCGTGGAGTCAATCGTAACAATTATTTTCAACAATCAAACCTAGAGGCTTCCCGTGAGAAAGATA TCAACAGAAATATATTTTCAGCCATTGATTTCACCTGTCAACGCGATCCCCGCCGATCAAACAGGCTCCAACGACTCAAG ATGCGGATTACCAAGCTGGTAGAACTCCACACATCATCTTAGTCCTTGACACCACCATTGGGCTGGGAAAATAAAAGAAG AAAATAAAACCTATGTATCCATAGTCTAATTTTAAAGTTAAGTCATAGACTACGCTAACACAAGCCACACTTAAAACCGT ACGTTCTCAGAAGTTCAAATCATATTCTTTGCATCAATTCTATTATGCCATATTTTTCTCCCATCTCTTTATATCCCTAT TTTACAAATTAAAAAGAAGTATGAAACGAATGTACAAACACAATTTCTCTTTTCTCATTACTATGTCAATTGGATACTAA TGGGGAGCCTTTGTGAGCCCACTCGTTTGTTTTATTGTTGGATAAAATTAAGTTTGATAGATTAAGTTTACACGAATAAA ATTGTGTTTGAGAAACTTTCGCGCTAAAACAATTCTTACTAGGAATTTATAATTATAATAATTTTAAATGTAAAGGAGGA ATCATCCTTTGTTTTGTAGTATGACTACTACAAACAATTCATGGCAAAACCTGGCTATGAAAGAAGCAAGAAGAACAACC CCACCAATCAATGGAAGAACAGTGTTAACTAAAGCCTGTACTAAAAGCACAATAGGTTACAATCATAAATGTGGAACAAG AAGTCACATAAACACATCCTAGAATCTAGTGAAATAACTTAGTCTGCTCTAAATTCAGCCATCACAAGTATAAAACTTGG TACATTCTGAATAAAAACACAGGGCAACTATCTAATTCTCAACTTTTTTATTGTCCATATGATACAGTCTATTAAATTTA AAGCTCAGAATCCTGAACAGTTCAAAAAGGTTCAGGGCAAGTCACCCAGGCCTCAACATTTTCATTTTCATGCTCTTTCA TCGTTCACATGATTTACAACTTCTGCTTGACTGTCCAAGGGCATGTACTGTGCCATGATGGCTCTGATTTCTGAATCCAT ATATGACTGCAAGACAACAAGAAATGTACAGTTAACTTTTTGCACAAGCAAAACACTACCAGGTAAATTACAAAGGAAAC GTCTCTTGCTTCTGTAAGATGTAGCAGATCGGTGCAAATATTTCTGACACAAATGTCATGTTCTCATAGAACTCTAACAA AAAAACTCAGCTGACATGGAACTTATAGCATGTTTGGATCAGCTTCTTTTGTCTCAATCAATTCTAGTAACTAGAAGCTA CTCATAGAAGCTTGTCCTCAAAATTGATTATGTCTTCAGAATCAATCGTAGAAGGGTTTCCAAACATGCACTTGATGGAT CTCATACGAAAAATAAATTTAGAATTGAAGATGGGATTGAATAGCATCACCAAACTGAGAAAATACAACAAAGCTTACCC TTATTCTGTATTTGTATATAAGGTATCCCCCACCAGCAGATAGAACTAAGCCAGCTATAATGACCCAAAAAGCAGCCCAA GCAGATCTTCCTCCTTGACTAGCAGTTTTACCTGCAGAATACCCAATGGGAATATGAAAACAAGCACATTCAAATTTTTG TGTAAGAAAAAATACGTCAAGTGTATTTAACTCACTTATGCAGGTATCATGGTCCCTAATATACAGAAGATCCCCACTGC AACTGCAGTCATAGCTTCCCCAAGTATTCTTGCAGCTACATTCAGGGCACTGGCAAGCTTTCTTCTCTTTACATTCATCA ACGTCTGCAAGGATGAAGAAGGAGTAGTTCAACTTTAGAAGTTCATTCATTTTCATTATGATGAAAACATTTCAAGGTAT TATTATCAATGGCAAGATGAAGTTGATTTGTCTAAGTATAATTCACATACAAGCCAACATTTCACTTACTGAGACAGCAA TATGTCTTTCTATTTTAAGTCATTTCTGTTGTCCTAATGTTGCATACTGAGTTTAACTTGCAGAAAATACAAATTTAAGG ATTGTTGAAAAGTCCCACATTGACTCCAAATAGTTCTTAAAAAGGGTAGAGTGATCCTCACTCCTAAGCAGCTTTTGGGG TAGAGTTAGGCCTAAATGCCTAATCCAAATTCTAAGAAGGATGTTGTTACATATGATCATAGGGAGAAGTTTGAGCAAAA ATGTGGCCCAGGTTTCAGTATTGGGTGCTATTGTAGTAATAGTTCAAAACTTAATAGCAGGTTTGCAAACCAGTTTATAC TATTTAGGGTGCAAAAAAGAGTTTCATCCTCAAAACATGCTTGGCAAAATTTCGGCTGGTTAATCTTAAAACTGGGTTTT ATCTATAGCTCAAGTCGAAAGGAAGAAAGTTTTTCTTTTTTAGTTGACTCTCAAACAATGGTTTGCAAACTATAATCCAA AAATACTGTACATTAAACCATGGATCATATACTATTTCGGACATATTTGAAGAGCAATGAGAATATCAGCTTACCTTGAC AATGATATTTGAATCAGGATCCAGAATTTTTAGGTATATGTCGTACATAACTTACTATGTTCTAGATAAACATAACAATA CAAAGGTCCGCTCAAGGGACAACAAAAATAATAACAAATGCCAAAATGTCTCACCTTGACAATTTTTGACACCGTCACCT TTAAACCCTGCAGGACATTGGCATTTAACTTCTCCATCGTCCTGTTCGTGAAGTAATGACAACTTAAGTCACAACTCAAT TTTCCATTATAGATTTGTAAACCAGTAAATTTCAAATATTAAAGATTCAGTAGAGACAAAACATGCTGCTGAATGGAGCA TGAAAAAACTTGGTAACTACTAACCACACAAGCAGAAAATGCATGTCCATTCCGGGCTTCATGCCAACATCCTCCATTCT TTATCTTGCATCGCCCAGGTCCACTAGCTGAAAACCCAGAAAAGCCCAGTTGATTGAAACTATGTATGACTATGAATACA CATTTGCAAAAATGGTTAAGTTATCCTGTAGTTTCCCATATTTTTACAGAATTTGAAAATAAGTCTCTAGTTTAAGAGGT TTTAATGGGATCCTGACACTAATTTAGAATTTTTGAAATCAGTCCTTTAAGTTTAACTAAATTTTCAACTAGGTTCCTAC TGCTCATAAAGCTTTATAAAGAAGTACTTGAAACCAGTAATAGTGACTAGCAAAAGACTATAAATATCCAAAACGGGAGT TTACTAGCCATCAACCAGTAGGGATCAATTTAACAATTAATAGAAGTACAAAAATTTAATTAGAAACTCTTAAACTATAG AAGATACTTATGAAATAGATAAAGTTCTGATGAAATTTATGCAAAGAGAAAAGTTTCTTGTATTTTAACCTTCGCAGGTT GTATAACCATCTCCTTTGAACTGCACACCATCCACCAAGGGGCACTCACATACTCGCCCACGGAAAGTATCCTGAGAAAA TATTTACATGTATTAACAGGAATAGAGAAAACTGAAATCCCAATTGCCCTCTTATTAGATAGTTATTGTCACTAAAGCAT AAATACCTTGCATGCAGTGATGTTAGCTGCCTTATCCTTCCAACAACCACCATTATTTTCCAAGCATTCATTTGTCTCCA CATCTGCCAAGAAAAGTTTGTCACTCAAAGGTTCGAAACTAACAAGACAACAAAAAATATATCCACCCCCAACCAAAATA AATACCAAAAGAAAGCAAACATTTACTTACCACTGCTCAAACAAACAGCTGGTTCAGTAGTTTCTTCAAAACCAGAACAA ATAGCTTTCATAACAGCACCTTTCTCTAATTTCCCTGGAAAAAAAACATACTTTAAGAATTGAAAACCCATATCACCATG TATTAGAGAAGCATTCAGCACAGACCTCGATATTGTCGATTATTGACTACGAGAGTAGGCAATATGGTAACATCACCTCG GGATCCTTTCCCAACCTATAAGAACAAGTTTGTTAAACATCGATACATAACAATTTTATACAATCAATTAAATGATACAA ATAAAGGAGTACTTGGGCATCTTGCTCTTCTTTCAAAACAGGATTATCAGAATCAGCATCTGGATCTCCCATGCACCTTT CAATCTTCTTATTATCAAGACCTGCCGACATTGAAAAAACATATTCAAAAAGTCATTTCCAATCACCAAATAAAAACAAA AACAGCAACAACGATTCACTTACCTAGTGATTCAATGACAGCATCAGCACATTTCTTGTTGTACTTTTTCTCCTTCATTG GGCATCTAATTTGAAAATCAGTAACATAGTCCCACCAAAGCCAAGGTTTTTTGGCTTCACTTGTCACCTTATAAACACAT AGCTGCCTTAAATTTTCAATAACCACATCTTTCCCATCATAACCAGTGCTAAAGTCCTGCTCAGGATCTGGAGCGCAATA TCTTCCATGATTTATGCACTGGGACTTGCACTGTTTGCTTAATGTGAATGCCTTGGGACAATACCAAGTTATATAATGGG GTGTAAACTGAGTATATCCACCTTTCTCTAAAATCTGAGCCGCACCCTTGAAATCCTTCACAAATTCCATCAACATATCA CATTTAACTCCACACTCATCATTGCTGTTGGTCCACAACTCATATTCCACACGATCATCAGGGTGGGGGACAGCCTCCCT CCAATCAAGGTTTACATTGACCATCTCCCCACCACTTATGGACTTCTTTAATTTTTCACCAAAGCTTTTTTCAATGAGTG CTGATGGTATTGTTATGTTCTCTATGTATTTTGCAGATGATCCATCCTCTTCAGGCGTGTCCATGGTAATTAATTTTTCC TCAATATCATCCGCAACAAGAACAGCAGAAGCTCCAGCCTTCTGGGCATTCCAGACCTTCAAAGCAAAGAAGCAATCTGC AAGGGACACATAAAAGAAACTAAGAATACACCCCAGGAGAGAACATTTCAAGACTTGGTCAAACTTATAGCATGCTAGTC AAACTCTCACTTCCTCAACACAAGTGTAAAAGCAAATCGCAAATTTAAATTCACAGGTAATCAACTATCAAACGAACCGC AAAAACCATATCTAAAACCATCATTAAAACAAGCTAATGGGACAACAACTTATTTTCTCCAATAAAAGATAAAGGATAAA CCAGGCATGTATTGTATAACTCTTTCCAAATAAAACAATCAAGTGACACATCGAAAATTCCAATCCGAACAAAACCGAGG ACAATGGGGGGAAAATACTTGAACAAGGAAAGAAGAGTCTTGTAAATTGTAATATAAATCCGGGCAGACATATACAAGCA ATAGCTGTAATTAAACTGACAAAATCAACCAACTTCAGCTCAGAAAAAGCAAAATAATCAAAGCAACAAATAGCATGTTT CGATTCACATTCACATTTACATCTTCCAGAGTCAATTAGCTTCTCCCAGAATCAATTCAGGTGAAAATCTACCATGTATC CAAACATGCACAAAGACAAAATCATCCTATAGCTACTACCCAAATAGCAAAACTCAAAAAAAAAAAAATTGCATAAACCC TGATAAGATCTCAGTGAAGTAAACAGTTGACAACAGAAGAATCTTACTTCCACGATCGAGCAAAACAATAGTGGGAAGAG CTCCAGGCTTAGATTTAAAGGAAATCCCAGACTCATCGAACTCCTTACAACCCTTATGGTTATCCTTGGGGTACACAACG TTCCCAGCCATGCTACCACCGTACTGCGGAATCCCAAAGTTGCCAATCGCGCTATCGTGGGTACCCTTGATATCCTCCGG CGAAGTCACCGTCAAACTGTTCTTCTCCACCACAAATCTCGCCATTGACGACGGCGTCACCGACAGCAACAACAGAAACC CTAAAAGGAAACCCAGCGAGAATCTCCGAAGCTTCATCATCTTGATCCGCAACTGGGTTTTCCGAATTGTTCCAAATTGC AAGTTGATTCTTGATTCTCACTCAGCTTGTTATTTGAATAAAGATGGAAAAAAAAAATGGAGAGTGAGATTTTTTTTTTG TTGTTGTTTGAGGAGAAACAAATCTAAGTTGTGAAATTTAATGTTTGTTTTGTTGGTAAGAGGATTGTGTTACAACAACA ACAACGTAGAAACAAGAAAGAGAAAGAGAGAGAAAGTTGAAGACTCTGATTCTGATGAGTCCACACCACACAGACACAAA CAGAATGCAACTCTTCTAGTAAATCTTACCCATTAAGCACTAATCACGGTTAGTTTACTTGTTGATAATAATAATCCCTT TATTAAAAAAATTAACTTGATTAAACAAAATTTAACTTAATTCTACTTTTTATTTTTTTTATTTGGAGGAAATGAGTGAA AAAATGAGAAATTACACAGAGTAACACGCGGGAACCTAACTCTCATAC
CDS sequence (LotjaGi5g1v0322600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAAACTTCTGAAGAATGGAGTTCTCTCAGTGGATTCTACACAGCTGAAGAAGCTGATTTCATGAGCCAGTTGCT TAGTAACTGCTCAGTCCCTGATCACCAATATGAAAATTACAATTTGGAGATTCCACCTGCATCATGGTCTGGCCATGAAT CAACAATAATGAGTGTGACAGGCATCAATTGCAGTTCATATGTTCACGCAAATGCCAATAATAGTGAGACTAATTTTTTT GGTTTTTCACAAGGAAGTAGCTCCAATATTACTAATTGTAGCAACATGTTTCCTACTACAAGTGGTGGCAATTGCTGCTT TGATGATCCGGTAGCCAACATTGGCTTCATGTCAATAGGTGATGCCAAATTCAACACATTTAGTGTTCAAGGGAATGAAA ACTCTGATGAAGAGGTTATTGGTGACAAGGCTCACAAGCAATGTGAAGAACCAGTTTCTGAACCACCAGAAGAGGATATA ACCAGCAATCTTGAAAAGTCAGGAAAAAGATCCAGGAGCGCAATGGAGGTTCAAAAGAACAAGACAAATGTCAAATCTAG GAAGAAAGCAAAATCTGCTTTTACAAGCAACACTGAAGAGGATAGAAATCTTGGTCTTCATGGGCAGAGTTTGAGCAGTT GCTGCTCAGAAGATGATGACTCCAATGAGCTAAATGGTGGAGGGTCTTCAAGCTTGGACCAGAAGGATTCTACAACTATT AAGTTGAAGGGTAAATCAAGATCTGAAAGAGGTTCTGCTACTGACCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAA AATAAATGAAAGGTTGAAAATCTTACAAAACCTAGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAAGAAG CTGTTCAATATGTGAAGTTTTTACAACTCCAAATAAAGCTTCTGAGCTCTGATGATCTCTGGATGTATGCTCCCATTGCT TTCAACGGAATGAACATTGGACTAGACCTCAATCTTTTTCCAACCAAACAACCATAA
Protein sequence (LotjaGi5g1v0322600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQTSEEWSSLSGFYTAEEADFMSQLLSNCSVPDHQYENYNLEIPPASWSGHESTIMSVTGINCSSYVHANANNSETNFF GFSQGSSSNITNCSNMFPTTSGGNCCFDDPVANIGFMSIGDAKFNTFSVQGNENSDEEVIGDKAHKQCEEPVSEPPEEDI TSNLEKSGKRSRSAMEVQKNKTNVKSRKKAKSAFTSNTEEDRNLGLHGQSLSSCCSEDDDSNELNGGGSSSLDQKDSTTI KLKGKSRSERGSATDPQSIYARRRREKINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIA FNGMNIGLDLNLFPTKQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 333 | 332 | 8.6E-96 | – | |
| PANTHER | 2 | 333 | 332 | 8.6E-96 | – | |
| MobiDBLite | 147 | 176 | 30 | - | – | |
| MobiDBLite | 147 | 258 | 112 | - | – | |
| MobiDBLite | 197 | 237 | 41 | - | – | |
| Gene3D | 245 | 310 | 66 | 1.1E-11 | ||
| SUPERFAMILY | 250 | 318 | 69 | 1.27E-14 | ||
| ProSiteProfiles | 252 | 301 | 50 | 15.459 | ||
| SMART | 258 | 307 | 50 | 7.7E-12 | ||
| CDD | 261 | 306 | 46 | 1.07873E-12 | ||
| Pfam | 262 | 302 | 41 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0322600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…