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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0322700 |
| Transcript ID | LotjaGi5g1v0322700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G27740.1 root hair defective 6-like 4; Swiss-Prot: sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54; TrEMBL-Plants: tr|A0A0B2PC18|A0A0B2PC18_GLYSO Transcription factor bHLH85; Found in the gene: LotjaGi5g1v0322700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64114317..64116590) extracted from Lotus japonicus Gifu genome v1.2.
CCAACTTGTATAATAAAATAATGTTACAACTTATGTACAATAGTTCAAATTGTCACACCTCGTCTCGAAACTGCGTACGT CGGATCTTGGTGCACCGGAATGCCTTACAGATTAATTCTATACATCATATTCATGTCCTCTAGTGTACCAACTCTCACAC CACTGCACCAGTCTCATTCAGCAACAGCACTTGATCAATCATCAATGTGCTTCTTCCTACTTGAGAGGAGAATTTTAAGA CTCGTTCAAGACTAGTATTTTATTGCAAATCAAGACCTTGAGCTGTGTCCTCTTAAATTATAAGTGGCCCCATCAAGGAC TAGTGCAAGTTAATCTCAGGGTGGTATCAGTATTTTGTCCTTACCTTACCAATCATGAATAGAATCTTTTTCAATATCCC TTTTTGGCATTACCTCAAGTTGTTGGGTATAAATACACTACTGAAACTCTCACTTTTATTCTCATCAAAGCATTTAAACA AAATCAAGCTCCTTCATTTGTTCTATATACTAACACACTAGAAAAAGAGGGAAATGGAACCTATTCAGTTAATTTCTGAA GAATGGGGTTCTCTTAGTGGACTTTACACAGCTGAGGAAGCTGACTTCATGGCCCAGTTGCTTGGTGGCAACTATTCTGT CACAGACAAGCACTGTGGAAATCCCAGTTTTGGCATGCCAATGCCATCTTCTACCATTTGGCATGGTCATGAATCCACAA CACTGACCTTGACAAGCACCAATAGCAATTCATATTTTCCTTCAAATGTCACAAATACTAATTTTCTCAGTTTCTCCCAA GGGAGTACCTCCAGCACTGATAGTGGTAGTTTTCAATGGAATGACAAGTTAACCCAACAGATTACTCAAAGCATTAATGA AGAGTCAGGGAGACAGGTTCTTACTGAGAACAATTTGCAGGCTAAGAGGGAGTATCATGAAATGATGGTTTCTGAACCTG CAGAAGAGGAAAGAAGCAGAAACCTGGAGAACCCAACAAAAAGATTTAGGAACTCAATAGAGGTAATAAAATAGTACTTA GGTGACTGCATTTCTATTCTTCCTTTAGAATATGAGTTATGTTGTTTACTTATGTGGGATTCTGATTTCTGATCATGATT TTATTATGTAGGACTTTAAAAACATGAGGAATGCTATGCCCATAAGCAATAATGAAGAGGGTAGAGGAGCATGCCTCCAA AGCAGTTGTTTTTCACAAGTTGACTCTAATGCTTCTTTGGAGTTAGTAAGTGGAGGAGCAACTTCAAGTATGACCCCAAA AGATCCTGAAGCTCCTAAGTTATATGGAAAATCAAGAGCCACTAGTGGTCCTGCCACTGATGCACAAAGCATATATGCAA GAGTAAGTGCACGTTTTGAAATCATTCTATACCATTGATTCTGAAGTCAAAATCAATTATGGGAAGAAGCACCTGTGAGT AGCTTCCAAATGACAGAATTGATTCTGAGAAAAAATAAGTTGATCCCAACATGCTATAAGTCCACTTTGAAGGGAAATTC TTGATGAAGAATTAAACATGTATTTGTAATCTTGTTTTTGCTCTCAGCTAAAAAGTTTTATCTCTTCCCTTTTGCAGAAG CGAAGAGAAAGAATAAATGAAAGGTTGAAAATACTGCAAAGCCTTGTCCCCAATGGAACTAAGGTAGCTTTCTCTATGAC ACTTGAATAACTACTACTCAATTATTGATGAAGTGTTCATAGTCTCAAGCTTTCTTTCTTGGTGAATTGTAGGTGGATAT CAGCACCATGCTTGAGGAAGCTGTTCAATACGTGAAGTTTTTACAGCTCCAAATTAAGGTAACAATTTTACTACTTCTTA TTTTAAAAATATAATGATTAATTCATTGGTGATTTCTAATTTTTTGATTTGGGTGGAACAGGTTTTGAGCTCGGATGATA TGTGGATGTATGCTCCGATTGCTTACAATGGAATGGACATTGGATTAGATCTCAGTAGTTCTCCAACTAAAGGAAGATGA GTGTGTTGAGAACAGAGCAATTACAGAGGATAGAGCATTTCATTAGCTTAATCATATTTATATTGGGTTCATTTGTATAA ATAGGATTAAATCCTGCAAACTATGGTCAAACAAGCCTATTTTTGCTTTTGGGTAATGTTTTAAAAACAAAACTATTCAT GATTTAATGGTTCAAATATTGTTGAACTATGATGTAATTAGTAGAAATTAAATATCTGCTAATCTTATATCAACTAATAA ATGATATAAATTAATAATAAATAAAGTTTAAATT
CDS sequence (LotjaGi5g1v0322700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTATTCAGTTAATTTCTGAAGAATGGGGTTCTCTTAGTGGACTTTACACAGCTGAGGAAGCTGACTTCATGGC CCAGTTGCTTGGTGGCAACTATTCTGTCACAGACAAGCACTGTGGAAATCCCAGTTTTGGCATGCCAATGCCATCTTCTA CCATTTGGCATGGTCATGAATCCACAACACTGACCTTGACAAGCACCAATAGCAATTCATATTTTCCTTCAAATGTCACA AATACTAATTTTCTCAGTTTCTCCCAAGGGAGTACCTCCAGCACTGATAGTGGTAGTTTTCAATGGAATGACAAGTTAAC CCAACAGATTACTCAAAGCATTAATGAAGAGTCAGGGAGACAGGTTCTTACTGAGAACAATTTGCAGGCTAAGAGGGAGT ATCATGAAATGATGGTTTCTGAACCTGCAGAAGAGGAAAGAAGCAGAAACCTGGAGAACCCAACAAAAAGATTTAGGAAC TCAATAGAGGACTTTAAAAACATGAGGAATGCTATGCCCATAAGCAATAATGAAGAGGGTAGAGGAGCATGCCTCCAAAG CAGTTGTTTTTCACAAGTTGACTCTAATGCTTCTTTGGAGTTAGTAAGTGGAGGAGCAACTTCAAGTATGACCCCAAAAG ATCCTGAAGCTCCTAAGTTATATGGAAAATCAAGAGCCACTAGTGGTCCTGCCACTGATGCACAAAGCATATATGCAAGA AAGCGAAGAGAAAGAATAAATGAAAGGTTGAAAATACTGCAAAGCCTTGTCCCCAATGGAACTAAGGTGGATATCAGCAC CATGCTTGAGGAAGCTGTTCAATACGTGAAGTTTTTACAGCTCCAAATTAAGGTTTTGAGCTCGGATGATATGTGGATGT ATGCTCCGATTGCTTACAATGGAATGGACATTGGATTAGATCTCAGTAGTTCTCCAACTAAAGGAAGATGA
Protein sequence (LotjaGi5g1v0322700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPIQLISEEWGSLSGLYTAEEADFMAQLLGGNYSVTDKHCGNPSFGMPMPSSTIWHGHESTTLTLTSTNSNSYFPSNVT NTNFLSFSQGSTSSTDSGSFQWNDKLTQQITQSINEESGRQVLTENNLQAKREYHEMMVSEPAEEERSRNLENPTKRFRN SIEDFKNMRNAMPISNNEEGRGACLQSSCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR KRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGMDIGLDLSSSPTKGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 309 | 304 | 4.6E-81 | – | |
| PANTHER | 6 | 309 | 304 | 4.6E-81 | – | |
| MobiDBLite | 203 | 236 | 34 | - | – | |
| ProSiteProfiles | 230 | 279 | 50 | 15.421 | ||
| SUPERFAMILY | 231 | 296 | 66 | 1.26E-14 | ||
| Gene3D | 232 | 288 | 57 | 8.5E-12 | ||
| SMART | 236 | 285 | 50 | 6.1E-12 | ||
| CDD | 239 | 284 | 46 | 1.64683E-12 | ||
| Pfam | 240 | 280 | 41 | 1.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0322700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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