Transcript — View — Lotus Base

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LotjaGi5g1v0323700.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0323700
Transcript ID	LotjaGi5g1v0323700.1
Lotus japonicus genome version	Gifu v1.2
Description	Transcriptional adapter 1; TAIR: AT4G33890.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp\|Q6DEW4\|TADA1_XENTR Transcriptional adapter 1; TrEMBL-Plants: tr\|A0A0L9U0A8\|A0A0L9U0A8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0323700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:64219187..64221523) extracted from Lotus japonicus Gifu genome v1.2.

GACAAAATTCATTTTTTCAACTGTGAGAGGGAACAATAGACAGAAAAGAGGGAAGAACGACGAGAGAGCACAAGGTTGAA GATGACTGAAGAATGTTACGCCTGCTTTGAGTAAAATCCCTTCTTCGAAATTAGGGTTTTCTCTCCATCATCTCTTCTCA TTCACAATCCGCACGCCACCAAAATAGCAATTGGGGCTTCCAACTTGATACTCAATTCAACATCGGCGGCTTCACATTTT GGTACGAATCTCTATCTCCCCCTAATTTCATCAAATCTTGCAACTTTCTTCCAAAGGGTTTTCATTTCTACTCGATTTTC GCTGCTTAGATTTCTCAATTTTGCTCATTTCTCAATTTCGCCCAATTGTCATCTGAATTGCTGTCTCTAATGGTTGAATT GAACTCGATCGTGATTTCTGATTATGAATTGTTGATAAAGATATTGTTTTGGAACTAGGGTTTATATCAAGTTTTTGTTT TTTTGATTGTTTGGGTTTTGTTGATTTGAGAATCTGAGGTTGTAATTTACTTGTTGACTCAGTGATTGTGTGAAGATTTG GAGGGAAATGACGGTGCCGAAGCGAAGCTATATTCGAGTTGACACTCTCAAGCTGAAGGCTCTGATTGTTCGGAAGGTTG GTCAGCAGAGAGCTGGCAAGTACTTTGGTCAGCTTGGAAGGTTGTTGAGTTCAAAGATTAGCAAATCTGAGTTTGACAGG GTTTGCATCAGGACAATTGGGAGGGAAAATATCCCTCTTCACAATCAGTTCATCAAAGCAATTCTCAAGAATGCTTGTTC GTCTAAAGTCCCGCCTCCGAGAGGTCCTGCAAGGATAGGGAGTGCCTTAAGTGGGAGGGATTCGAATGGGCTGCAGCAAA GCTCTGTTCAAATACCGTATGGGGATGCAGTTCCTTCTTTGTTGCGGAAGGATGGCTCTGTGGCTCCCCGGGAGCAAAAG TTCAAGGGCCGGCGAAATGGTTTTGGACTGCTGGGTAAGCCGCAAAGTCTTACACCGGAAGAATTGATCGACAAGGCTCA ACAGCAGCAGAGTGCAACAGAGCTGAATTCCCTTGGCAGCAGACCTCCTATTTCTGTTGAAGAGGGTGAAGAGGTTGAAC AGATGGCCAGAAGCCCCAGCATCCAAAGCAGGAGCCCAGTTACAGCTCCCCTTGGTATATCCATGAATTTCGGTCATGGA CGTAAACTTCTTTCCAACGTATTAGGTAGCAAATGTCATCCAGATACCTGTCAAAGCAGTGGGGATCTCCCTGACACAAG ATCTTTGAGGAGTCGGTTGGAGCAAAAGTTGGAGAAGGAGGGTTTAACTGTGACAGTGGATTGTGTAAATCTATTGAATA ACGCGCTGGATTCATATCTCAAGAGATTGATTGAATCCTCTATAGGTTTGGCTGGGTCAAGATCTGGAAGTGAGTACCTA AGAATGCGAAACCGACAGTCAGTAACTGGTTCAAATGTATTGCTACCTGCAAGATACATGCAAACAGCAACACAGTCTGC TGGTGTATCTGTCTCCGATTTTCGTGTTGCTATGGAGTTAAATCCACAAGTTCTAGGACCAGATTGGCCCATACAGCTTG AGAAAATTTGCATCTGCGCTTCTGAAGAAAGAAGCCAGTGTTCTCAGTAGATCAGAATTTTTTTCTAGTAGATGAATTTA AAATGCAGGAGTTAGTAGGCAGTCCATGCTTGTGAAGAGTTTCAAATGTTGAACTGTTTACTTCAGCTGACATGACTTTG GGTTTTCGTTTAGTCCTGATGTTATGCAATTTGCCGAAACAGAATAAGCTGTCATTTTAGAAATAAGATAGGGAGTTGGT CATGTCAATACAAAAATATTGGAAACTAGATAGGGTTAAGAAGTTCATTGTATCACGAGTGTAACACCATTCTTCATTAA TATCCTGTTCTTTTTTGTTTATTTTTAGTTCAACTAGTTTTTATTGAAATAAAGCACTTCTGAATGCCTTGGTTTCAACT TTGGCTGTCGATCATGCAACAGGTTTAGGACCTGATCTTGAGTTACTGCATCTCATGGTTCATTTTAAAAGAATGTGAGC CCGGCAAATTTGCAATGAATATGATAAGGGTAAATTTGAGCAAGTTCAGGATATTGAATATTGTTACTTGATTATGACAT CTTTTCTGCTGCCCTGGCATAGTCAATTTAATAAAAATGTATCCTCAAAATTGTCACTGCGGGCAGTTCTGCCAGTTAAA ACAGAAATGGTCATATGTATACTTTCTGTTTTATATCGAGATCTGACAGGTTTATGCTTCTGCAATGGTTGTGGCTCGTC ATTATTTTCCACGAACT

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0323700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGGTGCCGAAGCGAAGCTATATTCGAGTTGACACTCTCAAGCTGAAGGCTCTGATTGTTCGGAAGGTTGGTCAGCA GAGAGCTGGCAAGTACTTTGGTCAGCTTGGAAGGTTGTTGAGTTCAAAGATTAGCAAATCTGAGTTTGACAGGGTTTGCA TCAGGACAATTGGGAGGGAAAATATCCCTCTTCACAATCAGTTCATCAAAGCAATTCTCAAGAATGCTTGTTCGTCTAAA GTCCCGCCTCCGAGAGGTCCTGCAAGGATAGGGAGTGCCTTAAGTGGGAGGGATTCGAATGGGCTGCAGCAAAGCTCTGT TCAAATACCGTATGGGGATGCAGTTCCTTCTTTGTTGCGGAAGGATGGCTCTGTGGCTCCCCGGGAGCAAAAGTTCAAGG GCCGGCGAAATGGTTTTGGACTGCTGGGTAAGCCGCAAAGTCTTACACCGGAAGAATTGATCGACAAGGCTCAACAGCAG CAGAGTGCAACAGAGCTGAATTCCCTTGGCAGCAGACCTCCTATTTCTGTTGAAGAGGGTGAAGAGGTTGAACAGATGGC CAGAAGCCCCAGCATCCAAAGCAGGAGCCCAGTTACAGCTCCCCTTGGTATATCCATGAATTTCGGTCATGGACGTAAAC TTCTTTCCAACGTATTAGGTAGCAAATGTCATCCAGATACCTGTCAAAGCAGTGGGGATCTCCCTGACACAAGATCTTTG AGGAGTCGGTTGGAGCAAAAGTTGGAGAAGGAGGGTTTAACTGTGACAGTGGATTGTGTAAATCTATTGAATAACGCGCT GGATTCATATCTCAAGAGATTGATTGAATCCTCTATAGGTTTGGCTGGGTCAAGATCTGGAAGTGAGTACCTAAGAATGC GAAACCGACAGTCAGTAACTGGTTCAAATGTATTGCTACCTGCAAGATACATGCAAACAGCAACACAGTCTGCTGGTGTA TCTGTCTCCGATTTTCGTGTTGCTATGGAGTTAAATCCACAAGTTCTAGGACCAGATTGGCCCATACAGCTTGAGAAAAT TTGCATCTGCGCTTCTGAAGAAAGAAGCCAGTGTTCTCAGTAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0323700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTVPKRSYIRVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFIKAILKNACSSK VPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLRKDGSVAPREQKFKGRRNGFGLLGKPQSLTPEELIDKAQQQ QSATELNSLGSRPPISVEEGEEVEQMARSPSIQSRSPVTAPLGISMNFGHGRKLLSNVLGSKCHPDTCQSSGDLPDTRSL RSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMRNRQSVTGSNVLLPARYMQTATQSAGV SVSDFRVAMELNPQVLGPDWPIQLEKICICASEERSQCSQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21277:SF27 View details on PTHR21277:SF27 Search for proteins/transripts with this domain View external data on PTHR21277:SF27	3	354	352	2.1E-157	–
PANTHER	PTHR21277 View details on PTHR21277 Search for proteins/transripts with this domain View external data on PTHR21277	3	354	352	2.1E-157	IPR024738 Show description in modal box View details on IPR024738 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12767 View details on PF12767 Search for proteins/transripts with this domain View external data on PF12767	9	281	273	9.9E-56	IPR024738 Show description in modal box View details on IPR024738 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	80	103	24	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	156	198	43	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	156	171	16	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0070461 View details of GO:0070461 AmiGO InterPro QuickGO	Cellular component	SAGA-type complex	A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins.	Subterm of View details of GO:0000123

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0323700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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